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questions
10
votes
9
replies
11k
views
demultiplex a dataset when you have barcodes as a separate fastq
demultiplex
next-gen
sequencing
updated 3.7 years ago by
Biostar
20 • written 6.7 years ago by
IP
▴ 760
0
votes
0
replies
578
views
Annotation of structural variant mechanism
sequencing
structural-variation
annotation
4.4 years ago by
IP
▴ 760
11
votes
6
replies
2.8k
views
Insert mutations in a reference genome from a vcf
sequencing
snp
simulation
updated 5.2 years ago by
WouterDeCoster
47k • written 5.2 years ago by
IP
▴ 760
9
votes
5
replies
5.9k
views
Differential expression: replicates in one condition, no replicates in the other
RNA-Seq
sequencing
EdgeR
updated 5.3 years ago by
Gordon Smyth
★ 7.0k • written 6.7 years ago by
IP
▴ 760
4
votes
2
replies
1.3k
views
Error correction of long reads
nanopore
pacbio
sequencing
5.5 years ago by
IP
▴ 760
9
votes
6
replies
11k
views
Programs of UCSC utilites
software error
UCSC
kentUtilites
updated 2.8 years ago by
Alex Reynolds
35k • written 7.7 years ago by
IP
▴ 760
0
votes
2
replies
1.7k
views
How is the 2nd best hit found in bwa-mem
bwa-mem
updated 6.2 years ago by
Biostar
20 • written 6.3 years ago by
IP
▴ 760
0
votes
0
replies
1.6k
views
Gene expression sperm database
GTEx
RNA-Seq
6.8 years ago by
IP
▴ 760
2
votes
3
replies
1.9k
views
Extract R2F1 reads
Structural Variation
pysam
samtools
6.8 years ago by
IP
▴ 760
1
vote
2
replies
2.8k
views
How does CIRCexplorer2 work with paired-end data?
RNA-Seq
circRNA
tophat
updated 7.3 years ago by
kepbod
▴ 90 • written 7.4 years ago by
IP
▴ 760
3
votes
4
replies
1.6k
views
converting Indel Realigned Bam to fastq
exome-seq
next-gen
updated 7.3 years ago by
igor
13k • written 7.3 years ago by
IP
▴ 760
1
vote
1
reply
1.5k
views
Detecting non-exonic conserved regions
bed
signal detection
updated 7.4 years ago by
Chirag Nepal
★ 2.4k • written 7.4 years ago by
IP
▴ 760
3
votes
1
reply
1.9k
views
Tophat vs Tophat-fusion concordant alignment rate
RNA-Seq
tophat
tophat-fusion
7.4 years ago by
IP
▴ 760
0
votes
0
replies
1.5k
views
Mismatches in cancer RNA-seq
cancer
RNA-Seq
tophat
updated 7.4 years ago by
Biostar
20 • written 7.6 years ago by
IP
▴ 760
1
vote
5
replies
4.2k
views
fastqc overrepresented sequences
fastqc
RNA-Seq
7.5 years ago by
IP
▴ 760
1
vote
7
replies
1.8k
views
K-mers in the middle of the read
RNA-Seq
kmers
mapping
7.6 years ago by
IP
▴ 760
5
votes
2
replies
3.4k
views
circRNA- seq normalization
RNA-Seq
normalization
circRNA
updated 7.6 years ago by
Kanne
▴ 450 • written 7.6 years ago by
IP
▴ 760
4
votes
4
replies
3.3k
views
Get the 5'UTR of a set of genes
sequence
gene
5'UTR
updated 7.7 years ago by
Carlo Yague
8.7k • written 7.7 years ago by
IP
▴ 760
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