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0
votes
2
replies
490
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Differential gene expression pattern changes while using nuclear/unspliced counts
model
kallisto
mixed
DEG
updated 9 months ago by
dsull
★ 5.8k • written 9 months ago by
akilabioinfo
▴ 10
0
votes
0
replies
296
views
How to use python packages for mixed model while differential testing?
DGE
mixed
model
lme4
MAST
22 months ago by
akilabioinfo
▴ 10
0
votes
0
replies
596
views
Problem in Installing Seurat in rpy2.robjects
Seurat.geos
rpy2
22 months ago by
akilabioinfo
▴ 10
0
votes
0
replies
1.1k
views
Comment:
Comment: "NaN " values are copied instead of float values (pd dataframe to adata.obs)
updated 23 months ago by
Ram
43k • written 23 months ago by
akilabioinfo
▴ 10
0
votes
1
reply
1.1k
views
Comment:
Comment: "NaN " values are copied instead of float values (pd dataframe to adata.obs)
23 months ago by
akilabioinfo
▴ 10
1
vote
5
replies
1.1k
views
"NaN " values are copied instead of float values (pd dataframe to adata.obs)
pandas
anndata
updated 23 months ago by
Ram
43k • written 23 months ago by
akilabioinfo
▴ 10
0
votes
0
replies
324
views
Empty droplets- Knee/inflection cutoff python module
QC
kneeplot
dropseq
23 months ago by
akilabioinfo
▴ 10
0
votes
1
reply
888
views
Comment:
Comment: Unspliced matrix from RNA velocity is it similar to pre-mRNA alignment?
23 months ago by
akilabioinfo
▴ 10
1
vote
3
replies
888
views
Unspliced matrix from RNA velocity is it similar to pre-mRNA alignment?
velocity
DEG
count
RNA
updated 23 months ago by
dsull
★ 5.8k • written 23 months ago by
akilabioinfo
▴ 10
0
votes
1
reply
1.5k
views
Comment:
Comment: RNA velocity similar mtx for spliced and unspliced region (dropseq)
2.2 years ago by
akilabioinfo
▴ 10
0
votes
1
reply
1.5k
views
Comment:
Comment: RNA velocity similar mtx for spliced and unspliced region (dropseq)
2.2 years ago by
akilabioinfo
▴ 10
1
vote
5
replies
1.5k
views
RNA velocity similar mtx for spliced and unspliced region (dropseq)
Dropseq
RNAvelocity
Kallisto-bustools
updated 10 months ago by
Ram
43k • written 2.2 years ago by
akilabioinfo
▴ 10
1
vote
1
reply
1.2k
views
Differential transcript usage StageR error message
DRIMSEQ
BIOCONDUCTOR
DTU
stage-R
R
updated 5.4 years ago by
zx8754
11k • written 5.4 years ago by
akilabioinfo
▴ 10
12
votes
12
replies
7.5k
views
What is the advantage of variant calling using RNA-seq technique?
RNA-Seq
galaxy
variant calling
updated 5.5 years ago by
jpuntomarcos
▴ 50 • written 5.9 years ago by
akilabioinfo
▴ 10
0
votes
2
replies
2.1k
views
How to perform eQTL study if i have small sample size?
eQTL
GWAS
SNP
RNA-Seq
updated 5.8 years ago by
maxime.policarpo
▴ 200 • written 5.8 years ago by
akilabioinfo
▴ 10
0
votes
1
reply
7.5k
views
Comment:
C: What is the advantage of variant calling using RNA-seq technique?
5.9 years ago by
akilabioinfo
▴ 10
0
votes
0
replies
7.5k
views
Comment:
C: What is the advantage of variant calling using RNA-seq technique?
5.9 years ago by
akilabioinfo
▴ 10
0
votes
1
reply
1.7k
views
Comment:
C: Differential gene expression results are different while using hg19 and hg38 gen
5.9 years ago by
akilabioinfo
▴ 10
2
votes
7
replies
1.7k
views
Differential gene expression results are different while using hg19 and hg38 genomic assembly
RNA-Seq
galaxy
cufflink
featurecounts
stringtie
updated 5.9 years ago by
Devon Ryan
104k • written 5.9 years ago by
akilabioinfo
▴ 10
0
votes
0
replies
1.8k
views
Comment:
C: How to identify the SiRNA abundance from transcriptome data
6.6 years ago by
akilabioinfo
▴ 10
0
votes
1
reply
1.8k
views
Answer:
A: How to identify the SiRNA abundance from transcriptome data
6.6 years ago by
akilabioinfo
▴ 10
0
votes
4
replies
1.8k
views
How to identify the SiRNA abundance from transcriptome data
RNA-Seq
sequence
galaxy
6.6 years ago by
akilabioinfo
▴ 10
0
votes
1
reply
1.5k
views
Can we use ballgown if i don't have replicates
RNA-Seq
R
updated 2.9 years ago by
HaroonPakistan
• 0 • written 7.3 years ago by
akilabioinfo
▴ 10
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