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Differential gene expression pattern changes while using nuclear/unspliced counts
model kallisto mixed DEG
updated 9 months ago by ★ 5.9k • written 9 months ago by ▴ 10
0
votes
0
replies
299
views
How to use python packages for mixed model while differential testing?
DGE mixed model lme4 MAST
22 months ago by akilabioinfo ▴ 10
0
votes
0
replies
611
views
Problem in Installing Seurat in rpy2.robjects
Seurat.geos rpy2
23 months ago by akilabioinfo ▴ 10
1
vote
5
replies
1.2k
views
"NaN " values are copied instead of float values (pd dataframe to adata.obs)
pandas anndata
updated 23 months ago by 43k • written 23 months ago by ▴ 10
0
votes
0
replies
328
views
Empty droplets- Knee/inflection cutoff python module
QC kneeplot dropseq
24 months ago by akilabioinfo ▴ 10
1
vote
3
replies
908
views
Unspliced matrix from RNA velocity is it similar to pre-mRNA alignment?
velocity DEG count RNA
updated 24 months ago by ★ 5.9k • written 2.0 years ago by ▴ 10
1
vote
5
replies
1.5k
views
RNA velocity similar mtx for spliced and unspliced region (dropseq)
Dropseq RNAvelocity Kallisto-bustools
updated 10 months ago by 43k • written 2.3 years ago by ▴ 10
1
vote
1
reply
1.2k
views
Differential transcript usage StageR error message
DRIMSEQ BIOCONDUCTOR DTU stage-R R
updated 5.4 years ago by 11k • written 5.4 years ago by ▴ 10
12
votes
12
replies
7.6k
views
What is the advantage of variant calling using RNA-seq technique?
RNA-Seq galaxy variant calling
updated 5.6 years ago by ▴ 50 • written 5.9 years ago by ▴ 10
0
votes
2
replies
2.1k
views
How to perform eQTL study if i have small sample size?
eQTL GWAS SNP RNA-Seq
updated 5.9 years ago by ▴ 200 • written 5.9 years ago by ▴ 10
2
votes
7
replies
1.8k
views
Differential gene expression results are different while using hg19 and hg38 genomic assembly
RNA-Seq galaxy cufflink featurecounts stringtie
updated 5.9 years ago by 104k • written 5.9 years ago by ▴ 10
0
votes
4
replies
1.8k
views
How to identify the SiRNA abundance from transcriptome data
RNA-Seq sequence galaxy
6.7 years ago by akilabioinfo ▴ 10
0
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1
reply
1.5k
views
Can we use ballgown if i don't have replicates
RNA-Seq R
updated 2.9 years ago by • 0 • written 7.3 years ago by ▴ 10
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