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5
votes
2
replies
297
views
Granges manipulation
granges
9 weeks ago by Bastien Hervé 5.3k
3
votes
5
replies
920
views
Differential gene score in single cell experiment
single-cell
updated 6 months ago by ▴ 250 • written 6 months ago by 5.3k
4
votes
6
replies
5.1k
views
ChIP-Seq experiment, MACS2 bdgpeakcall 0 fold-change, pvalue and qvalue
ChIP-Seq MACS2
updated 12 months ago by • 0 • written 5.4 years ago by 5.3k
7
votes
7
replies
3.3k
views
Consistency of Seurat SCTransform across computers/environments
Seurat
3.6 years ago by Bastien Hervé 5.3k
6
votes
4
replies
3.1k
views
biomaRt getBM function report some NA
R biomaRt
5.1 years ago by Bastien Hervé 5.3k
10
votes
12
replies
3.6k
views
Count antisense transcripts using STAR --quantMode
STAR RNA-Seq --quantMode
updated 5.2 years ago by 104k • written 5.2 years ago by 5.3k
7
votes
2
replies
3.2k
views
ChipSeq using MACS2 - option to not call peaks with only few reads ?
macs2 ChIP-Seq
5.2 years ago by Bastien Hervé 5.3k
3
votes
16
replies
3.2k
views
STAR Splice Junctions normalization
STAR RNA-Seq
5.4 years ago by Bastien Hervé 5.3k
2
votes
6
replies
1.8k
views
R visualization package : Genome-wide distribution and orientation of translocations
R
updated 5.5 years ago by 20 • written 5.6 years ago by 5.3k
4
votes
8
replies
1.4k
views
Samtools view behaviour with skipped region from the reference (N in Cigar)
samtools
5.6 years ago by Bastien Hervé 5.3k
6
votes
14
replies
1.9k
views
Python script random act
python
5.6 years ago by Bastien Hervé 5.3k
8
votes
6
replies
1.3k
views
Struggle with awk command
awk
updated 5.7 years ago by 14k • written 5.7 years ago by 5.3k
4
votes
13
replies
10k
views
Expression using greek letters in R
R
5.8 years ago by Bastien Hervé 5.3k
7
votes
5
replies
1.1k
views
Mimic input file with string
bedtools
updated 5.9 years ago by 161k • written 5.9 years ago by 5.3k
5
votes
9
replies
1.9k
views
Link someone in a Biostars post
tag link
updated 5.9 years ago by 142k • written 5.9 years ago by 5.3k
0
votes
1
reply
1.6k
views
KaryoplotR, display 2 different chromosome scales on the same plotKaryotype
R KaryoplotR
6.1 years ago by Bastien Hervé 5.3k
4
votes
5
replies
2.6k
views
How to force blastn to align full subject
blastn
updated 6.1 years ago by 20 • written 6.3 years ago by 5.3k
5
votes
10
replies
3.3k
views
Predicted gene differentially expressed in Kallisto, not in FeatureCounts
Kallisto FeatureCounts
updated 6.1 years ago by 35k • written 6.1 years ago by 5.3k
3
votes
2
replies
6.6k
views
STAR index fail with gtf, works with gff3
GFF3 GTF STAR
6.2 years ago by Bastien Hervé 5.3k
4
votes
5
replies
10k
views
Fastest way to subset dataframe in python
python blast dataframe
updated 6.3 years ago by ▴ 380 • written 6.3 years ago by 5.3k
6
votes
7
replies
3.8k
views
Mismatch issue in bwa
bwa bwa-mem bwa-aln bwa-samse short reads
updated 6.4 years ago by 142k • written 6.4 years ago by 5.3k
9
votes
7
replies
3.9k
views
Apply Deseq2 size factor to aligned reads
Deseq2 Size Factor BAM RNA-seq
updated 6.5 years ago by 104k • written 6.5 years ago by 5.3k
3
votes
2
replies
1.4k
views
Blood contamination in RNA-seq analysis
RNA-Seq
updated 6.6 years ago by 27k • written 6.6 years ago by 5.3k
23 results • Page 1 of 1
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