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Comment: C: Interpretation problem at PCA plot for detecting batch effect
5.8 years ago by modarzi ▴ 170
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1.9k
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Interpretation problem at PCA plot for detecting batch effect
PCA RNA-Seq batch-effect
updated 17 months ago by 45k • written 5.8 years ago by ▴ 170
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6.9k
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Comment: C: TCGA barcode documentation? TCGA wiki?
5.8 years ago by modarzi ▴ 170
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6.9k
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Comment: C: TCGA barcode documentation? TCGA wiki?
5.8 years ago by modarzi ▴ 170
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8.5k
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Comment: C: Batch ID in TCGA database
5.8 years ago by modarzi ▴ 170
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5.2k
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Comment: C: what kind of data can be directly WGCNA?
5.8 years ago by modarzi ▴ 170
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5.2k
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Comment: C: what kind of data can be directly WGCNA?
5.8 years ago by modarzi ▴ 170
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1.7k
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Comment: C: problem for Collapsing Probes For Same Gene in microarray gene expression data
5.8 years ago by modarzi ▴ 170
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1.7k
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Comment: C: problem for Collapsing Probes For Same Gene in microarray gene expression data
5.8 years ago by modarzi ▴ 170
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1.7k
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Comment: C: problem for Collapsing Probes For Same Gene in microarray gene expression data
5.9 years ago by modarzi ▴ 170
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1.7k
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Comment: C: problem for Collapsing Probes For Same Gene in microarray gene expression data
5.9 years ago by modarzi ▴ 170
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8
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1.7k
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problem for Collapsing Probes For Same Gene in microarray gene expression data
aggregate Microarray Collapsing Probes
5.9 years ago by modarzi ▴ 170
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1
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6.0k
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Comment: C: what does negative value mean in gene expression profile?
5.9 years ago by modarzi ▴ 170
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1
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4.3k
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Comment: C: How to deal with the NAs in WGCNA trait file?
5.9 years ago by modarzi ▴ 170
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1
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3.1k
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Comment: C: how to measure silhouette coefficient and Dunn index for Hierarchical Clustering
5.9 years ago by modarzi ▴ 170
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1.5k
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Comment: C: Regarding WGCNA gene expression data
5.9 years ago by modarzi ▴ 170
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1.5k
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Comment: C: Regarding WGCNA gene expression data
5.9 years ago by modarzi ▴ 170
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3
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3.1k
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how to measure silhouette coefficient and Dunn index for Hierarchical Clustering in WGCNA?
silhouette coefficient WGCNA
5.9 years ago by modarzi ▴ 170
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0
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1.1k
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problem for merging 2 pairs of reads by "SeqPrep" tool
seqprep rna-seq
5.9 years ago by modarzi ▴ 170
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1
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6.0k
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Comment: C: what does negative value mean in gene expression profile?
5.9 years ago by modarzi ▴ 170
1
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5
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6.0k
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what does negative value mean in gene expression profile?
RNA-Seq gene expression
5.9 years ago by modarzi ▴ 170
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1
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2.7k
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Comment: C: constructing network by WGCNA and validation Hub genes
5.9 years ago by modarzi ▴ 170
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1
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2.7k
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Comment: C: constructing network by WGCNA and validation Hub genes
5.9 years ago by modarzi ▴ 170
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5
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2.7k
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constructing network by WGCNA and validation Hub genes
Network Construction WGCNA hub genes
5.9 years ago by modarzi ▴ 170
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1
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8.8k
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Comment: C: Exporting WGCNA step-to-step network construction objects into igraph object
5.9 years ago by modarzi ▴ 170
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5
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8.8k
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Exporting WGCNA step-to-step network construction objects into igraph object
WGCNA igraph
updated 3.8 years ago by • 0 • written 6.0 years ago by ▴ 170
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0
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1.6k
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finding Topological Overlap Matrix(TOMType) value in TOMsimilarity() function in WGCNA
WGCNA TOM
updated 6.0 years ago by 20 • written 6.2 years ago by ▴ 170
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1.7k
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Comment: C: DASHR 2.0: integrated database of human small non-coding RNA genes and mature pr
6.1 years ago by modarzi ▴ 170
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1
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874
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Problem for downloading Non-coding RNA from Gene Expression Omnibus (GEO)
Non-coding RNA GEO
6.2 years ago by modarzi ▴ 170
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1
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1.4k
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Comment: C: how to filter genes in significant module?
6.2 years ago by modarzi ▴ 170
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3
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1.4k
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how to filter genes in significant module?
wgcna significant modules
6.2 years ago by modarzi ▴ 170
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1
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48k
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Comment: C: Survival analysis with gene expression
6.2 years ago by modarzi ▴ 170
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1
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48k
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Comment: A: Survival analysis with gene expression
6.3 years ago by modarzi ▴ 170
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1
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7.7k
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Comment: C: How to find p-value of the modules in WGCNA?
6.3 years ago by modarzi ▴ 170
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7.7k
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Comment: C: How to find p-value of the modules in WGCNA?
6.3 years ago by modarzi ▴ 170
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1
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48k
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Comment: C: Survival analysis with gene expression
6.3 years ago by modarzi ▴ 170
0
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1
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48k
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Comment: C: Survival analysis with gene expression
6.3 years ago by modarzi ▴ 170
0
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0
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1.5k
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how to match Ref. and Test data set genes for module preservation based on WGCNA?
WGCNA module preservation
6.4 years ago by modarzi ▴ 170
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1
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1.5k
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Comment: C: Problem for reading annotation file for GPL10999_family.soft
6.5 years ago by modarzi ▴ 170
2
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4
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1.5k
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Problem for reading annotation file for GPL10999_family.soft
annotation
6.5 years ago by modarzi ▴ 170
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1
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1.4k
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Comment: C: problem for 2 different normalization methods in train and test data set
6.5 years ago by modarzi ▴ 170
3
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3
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1.4k
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problem for 2 different normalization methods in train and test data set
RNA-Seq FPKM-UQ TPM
updated 6.5 years ago by 8.3k • written 6.5 years ago by ▴ 170
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1
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48k
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Comment: C: Survival analysis with gene expression
6.6 years ago by modarzi ▴ 170
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1
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48k
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Comment: C: Survival analysis with gene expression
6.6 years ago by modarzi ▴ 170
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1
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48k
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Comment: C: Survival analysis with gene expression
6.7 years ago by modarzi ▴ 170
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1
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48k
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Comment: C: Survival analysis with gene expression
6.7 years ago by modarzi ▴ 170
0
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1
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48k
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Comment: C: Survival analysis with gene expression
6.7 years ago by modarzi ▴ 170
0
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0
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12k
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Comment: C: How filter genes to construct co-expression network?
6.8 years ago by modarzi ▴ 170
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3.0k
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Comment: C: problem for gene survival analysis through "Survival" package in R
6.8 years ago by modarzi ▴ 170
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1
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3.0k
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Comment: C: problem for gene survival analysis through "Survival" package in R
6.8 years ago by modarzi ▴ 170
178 results • Page 2 of 4
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