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Answer: Answer: How to download raw sequence data from GEO/SRA
12 weeks ago by geocarvalho ▴ 390
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4.3k
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Comment: Comment: How to run Picard docker image
4 months ago by geocarvalho ▴ 390
1
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2
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630
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BAM to CRAM and BAM recover with smaller size
BAM samtools CRAM
updated 9 months ago by ★ 1.3k • written 10 months ago by ▴ 390
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12k
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Answer: Answer: bedGraphToBigWig Install error
18 months ago by geocarvalho ▴ 390
1
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1
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4.3k
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Answer: Answer: How to run Picard docker image
19 months ago by geocarvalho ▴ 390
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8.8k
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Answer: Answer: filtering the reads based on the length
20 months ago by geocarvalho ▴ 390
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9.1k
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Comment: Comment: filter reads in BAM having a tag
20 months ago by geocarvalho ▴ 390
3
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3.6k
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Comment: Comment: Paternity Testing from WGS Trio
20 months ago by geocarvalho ▴ 390
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1.7k
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Answer: Answer: Removing multi-variant records from vcf file
20 months ago by geocarvalho ▴ 390
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1.3k
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Answer: Answer: GATK4 ASEReadCounter Function of VCF
20 months ago by geocarvalho ▴ 390
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0
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95k
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Comment: Comment: Extract Sub-Set Of Regions From Vcf File
21 months ago by geocarvalho ▴ 390
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6.6k
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Answer: Answer: How to access specifically 30x NA12878 sequencing runs
9 months ago by geocarvalho ▴ 390
1
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1.6k
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Comment: Comment: Understanding bam tracks
2.4 years ago by geocarvalho ▴ 390
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1
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2.7k
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Comment: Comment: How to retrieve the SNP data from Bam file
3.0 years ago by geocarvalho ▴ 390
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1
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5.2k
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Comment: Comment: Copy Number Variation Tools
3.0 years ago by geocarvalho ▴ 390
4
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8.7k
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Answer: Answer: snpEFF not able to download GRCH38 ?
3.3 years ago by geocarvalho ▴ 390
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1
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95k
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Comment: Comment: Extract Sub-Set Of Regions From Vcf File
3.6 years ago by geocarvalho ▴ 390
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683
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Comment: C: Variant not annotated by ANNOVAR in the main transcript
4.0 years ago by geocarvalho ▴ 390
0
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1
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683
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Variant not annotated by ANNOVAR in the main transcript
Annovar Variant Annotation Transcript Exome
4.0 years ago by geocarvalho ▴ 390
1
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0
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26k
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Answer: A: Where to download blacklisted regions?
4.6 years ago by geocarvalho ▴ 390
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1
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1.9k
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Comment: C: Differential DNA methylation for each sample using Illumina HumanMethylation450
4.6 years ago by geocarvalho ▴ 390
6
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8
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1.9k
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Differential DNA methylation for each sample using Illumina HumanMethylation450 BeadChip dataset
R methylation humanmethylation450 limma
updated 4.6 years ago by 8.3k • written 4.6 years ago by ▴ 390
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1
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1.9k
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Comment: C: Differential DNA methylation for each sample using Illumina HumanMethylation450
4.6 years ago by geocarvalho ▴ 390
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5.6k
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Comment: C: Using limma to find differentially methylated probes across clusters
4.7 years ago by geocarvalho ▴ 390
1
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2.3k
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Answer: A: CNV and pseudogenes
4.7 years ago by geocarvalho ▴ 390
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0
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209k
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Comment: C: How To Update R In Ubuntu ?
4.9 years ago by geocarvalho ▴ 390
9
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1
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95k
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Answer: A: Extract Sub-Set Of Regions From Vcf File
updated 5.1 years ago by 44k • written 7.3 years ago by ▴ 390
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0
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2.6k
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Answer: A: Trying to Identify larger indels from NGS data, FASTQ format
5.8 years ago by geocarvalho ▴ 390
1
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0
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3.1k
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Comment: C: Identifying CNVs from targeted amplicon sequencing
5.9 years ago by geocarvalho ▴ 390
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1
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3.1k
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Comment: C: Identifying CNVs from targeted amplicon sequencing
5.9 years ago by geocarvalho ▴ 390
0
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0
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21k
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Comment: C: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
5.9 years ago by geocarvalho ▴ 390
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1
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21k
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Comment: C: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
5.9 years ago by geocarvalho ▴ 390
1
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2
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21k
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Comment: C: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
5.9 years ago by geocarvalho ▴ 390
0
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0
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1.7k
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Answer: A: Annotation tool for cnvKit
6.1 years ago by geocarvalho ▴ 390
0
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0
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2.9k
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Comment: C: how to fix error in getGEO function?
6.4 years ago by geocarvalho ▴ 390
0
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1
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2.9k
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Comment: C: how to fix error in getGEO function?
updated 6.4 years ago by 35k • written 6.4 years ago by ▴ 390
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2.0k
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Answer: A: Bioinformatics workshop or training courses
6.4 years ago by geocarvalho ▴ 390
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0
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1.5k
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Answer: A: Large deletions in exome sequencing data
6.6 years ago by geocarvalho ▴ 390
2
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1
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3.1k
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Answer: A: Identifying CNVs from targeted amplicon sequencing
6.6 years ago by geocarvalho ▴ 390
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0
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3.1k
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Answer: A: Plotting common SNPs from four individual from a vcf file
6.9 years ago by geocarvalho ▴ 390
2
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0
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2.8k
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Answer: A: R books with Quantitative Genetics examples?
7.0 years ago by geocarvalho ▴ 390
1
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0
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1.6k
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Answer: A: Packages/modules for CNV, Indels, SNPs analysis
7.0 years ago by geocarvalho ▴ 390
0
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0
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4.3k
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Comment: C: vcfeval Error: No sample name provided but calls is a multi-sample VCF
7.1 years ago by geocarvalho ▴ 390
4
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14k
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Answer: A: List all available databases for ANNOVAR
7.1 years ago by geocarvalho ▴ 390
2
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0
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4.3k
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Answer: A: vcfeval Error: No sample name provided but calls is a multi-sample VCF
7.1 years ago by geocarvalho ▴ 390
0
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1
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2.3k
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Answer: A: How to start analyzing next-generation DNA and RNA sequencing data?
7.3 years ago by geocarvalho ▴ 390
1
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0
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1.8k
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Answer: A: Where can I find a sample analysis pipeline for DNA?
7.7 years ago by geocarvalho ▴ 390
1
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0
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2.2k
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Comment: C: Bioinformatics Data Analyst, University of Pennsylvania, Philadelphia
7.8 years ago by geocarvalho ▴ 390
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1
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1.8k
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Answer: A: Different reference and variant allele in IonTorrent variantCaller
7.8 years ago by geocarvalho ▴ 390
1
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0
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5.2k
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Answer: A: Copy Number Variation Tools
7.8 years ago by geocarvalho ▴ 390
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