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BAM to CRAM and BAM recover with smaller size
BAM samtools CRAM
updated 5 months ago by ★ 1.3k • written 5 months ago by ▴ 370
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11k
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Answer: Answer: bedGraphToBigWig Install error
13 months ago by geocarvalho ▴ 370
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0
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4.0k
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Answer: Answer: How to run Picard docker image
15 months ago by geocarvalho ▴ 370
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0
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8.2k
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Answer: Answer: filtering the reads based on the length
15 months ago by geocarvalho ▴ 370
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8.2k
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Comment: Comment: filter reads in BAM having a tag
15 months ago by geocarvalho ▴ 370
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3.4k
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Comment: Comment: Paternity Testing from WGS Trio
15 months ago by geocarvalho ▴ 370
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1.5k
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Answer: Answer: Removing multi-variant records from vcf file
15 months ago by geocarvalho ▴ 370
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1.1k
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Answer: Answer: GATK4 ASEReadCounter Function of VCF
15 months ago by geocarvalho ▴ 370
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92k
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Comment: Comment: Extract Sub-Set Of Regions From Vcf File
16 months ago by geocarvalho ▴ 370
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6.1k
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Answer: Answer: How to access specifically 30x NA12878 sequencing runs
5 months ago by geocarvalho ▴ 370
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1.5k
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Comment: Comment: Understanding bam tracks
24 months ago by geocarvalho ▴ 370
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1
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2.5k
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Comment: Comment: How to retrieve the SNP data from Bam file
2.6 years ago by geocarvalho ▴ 370
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1
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5.0k
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Comment: Comment: Copy Number Variation Tools
2.6 years ago by geocarvalho ▴ 370
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8.3k
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Answer: Answer: snpEFF not able to download GRCH38 ?
3.0 years ago by geocarvalho ▴ 370
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1
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92k
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Comment: Comment: Extract Sub-Set Of Regions From Vcf File
3.2 years ago by geocarvalho ▴ 370
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645
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Comment: C: Variant not annotated by ANNOVAR in the main transcript
3.6 years ago by geocarvalho ▴ 370
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1
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645
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Variant not annotated by ANNOVAR in the main transcript
Annovar Variant Annotation Transcript Exome
3.6 years ago by geocarvalho ▴ 370
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24k
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Answer: A: Where to download blacklisted regions?
4.2 years ago by geocarvalho ▴ 370
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1
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1.7k
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Comment: C: Differential DNA methylation for each sample using Illumina HumanMethylation450
4.2 years ago by geocarvalho ▴ 370
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8
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1.7k
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Differential DNA methylation for each sample using Illumina HumanMethylation450 BeadChip dataset
R methylation humanmethylation450 limma
updated 4.2 years ago by 8.2k • written 4.2 years ago by ▴ 370
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1.7k
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Comment: C: Differential DNA methylation for each sample using Illumina HumanMethylation450
4.2 years ago by geocarvalho ▴ 370
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5.5k
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Comment: C: Using limma to find differentially methylated probes across clusters
4.3 years ago by geocarvalho ▴ 370
1
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2.2k
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Answer: A: CNV and pseudogenes
4.3 years ago by geocarvalho ▴ 370
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207k
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Comment: C: How To Update R In Ubuntu ?
4.5 years ago by geocarvalho ▴ 370
9
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1
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92k
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Answer: A: Extract Sub-Set Of Regions From Vcf File
updated 4.7 years ago by 44k • written 6.9 years ago by ▴ 370
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2.5k
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Answer: A: Trying to Identify larger indels from NGS data, FASTQ format
5.4 years ago by geocarvalho ▴ 370
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2.8k
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Comment: C: Identifying CNVs from targeted amplicon sequencing
5.5 years ago by geocarvalho ▴ 370
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1
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2.8k
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Comment: C: Identifying CNVs from targeted amplicon sequencing
5.5 years ago by geocarvalho ▴ 370
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0
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20k
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Comment: C: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
5.5 years ago by geocarvalho ▴ 370
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1
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20k
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Comment: C: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
5.5 years ago by geocarvalho ▴ 370
1
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2
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20k
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Comment: C: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
5.5 years ago by geocarvalho ▴ 370
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0
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1.6k
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Answer: A: Annotation tool for cnvKit
5.8 years ago by geocarvalho ▴ 370
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0
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2.8k
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Comment: C: how to fix error in getGEO function?
6.0 years ago by geocarvalho ▴ 370
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1
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2.8k
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Comment: C: how to fix error in getGEO function?
updated 6.0 years ago by 35k • written 6.0 years ago by ▴ 370
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1.8k
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Answer: A: Bioinformatics workshop or training courses
6.1 years ago by geocarvalho ▴ 370
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1.4k
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Answer: A: Large deletions in exome sequencing data
6.2 years ago by geocarvalho ▴ 370
2
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1
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2.8k
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Answer: A: Identifying CNVs from targeted amplicon sequencing
6.2 years ago by geocarvalho ▴ 370
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0
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3.0k
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Answer: A: Plotting common SNPs from four individual from a vcf file
6.5 years ago by geocarvalho ▴ 370
2
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0
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2.7k
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Answer: A: R books with Quantitative Genetics examples?
6.6 years ago by geocarvalho ▴ 370
1
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0
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1.5k
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Answer: A: Packages/modules for CNV, Indels, SNPs analysis
6.6 years ago by geocarvalho ▴ 370
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0
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4.2k
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Comment: C: vcfeval Error: No sample name provided but calls is a multi-sample VCF
6.7 years ago by geocarvalho ▴ 370
4
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13k
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Answer: A: List all available databases for ANNOVAR
6.7 years ago by geocarvalho ▴ 370
2
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0
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4.2k
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Answer: A: vcfeval Error: No sample name provided but calls is a multi-sample VCF
6.7 years ago by geocarvalho ▴ 370
0
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1
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2.1k
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Answer: A: How to start analyzing next-generation DNA and RNA sequencing data?
6.9 years ago by geocarvalho ▴ 370
1
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0
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1.7k
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Answer: A: Where can I find a sample analysis pipeline for DNA?
7.4 years ago by geocarvalho ▴ 370
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0
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2.1k
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Comment: C: Bioinformatics Data Analyst, University of Pennsylvania, Philadelphia
7.4 years ago by geocarvalho ▴ 370
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1
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1.7k
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Answer: A: Different reference and variant allele in IonTorrent variantCaller
7.4 years ago by geocarvalho ▴ 370
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0
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5.0k
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Answer: A: Copy Number Variation Tools
7.4 years ago by geocarvalho ▴ 370
0
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0
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7.0k
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Answer: A: Annotation of Structural Variants and CNVs
7.5 years ago by geocarvalho ▴ 370
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