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Answer: Answer: bedGraphToBigWig Install error
9 weeks ago by geocarvalho ▴ 350
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3.2k
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Answer: Answer: How to run Picard docker image
3 months ago by geocarvalho ▴ 350
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6.8k
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Answer: Answer: filtering the reads based on the length
4 months ago by geocarvalho ▴ 350
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5.6k
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Comment: Comment: filter reads in BAM having a tag
4 months ago by geocarvalho ▴ 350
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2.8k
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Comment: Comment: Paternity Testing from WGS Trio
4 months ago by geocarvalho ▴ 350
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954
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Answer: Answer: Removing multi-variant records from vcf file
4 months ago by geocarvalho ▴ 350
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589
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Answer: Answer: GATK4 ASEReadCounter Function of VCF
4 months ago by geocarvalho ▴ 350
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81k
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Comment: Comment: Extract Sub-Set Of Regions From Vcf File
5 months ago by geocarvalho ▴ 350
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4.9k
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Answer: Answer: How to access specifically 30x NA12878 sequencing runs
10 months ago by geocarvalho ▴ 350
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1.1k
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Comment: Comment: Understanding bam tracks
12 months ago by geocarvalho ▴ 350
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1
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1.9k
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Comment: Comment: How to retrieve the SNP data from Bam file
20 months ago by geocarvalho ▴ 350
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1
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4.4k
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Comment: Comment: Copy Number Variation Tools
20 months ago by geocarvalho ▴ 350
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6.9k
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Answer: Answer: snpEFF not able to download GRCH38 ?
2.0 years ago by geocarvalho ▴ 350
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1
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81k
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Comment: Comment: Extract Sub-Set Of Regions From Vcf File
2.3 years ago by geocarvalho ▴ 350
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513
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Comment: C: Variant not annotated by ANNOVAR in the main transcript
2.7 years ago by geocarvalho ▴ 350
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1
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513
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Variant not annotated by ANNOVAR in the main transcript
Annovar Variant Annotation Transcript Exome
2.7 years ago by geocarvalho ▴ 350
1
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20k
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Answer: A: Where to download blacklisted regions?
3.3 years ago by geocarvalho ▴ 350
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1
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1.3k
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Comment: C: Differential DNA methylation for each sample using Illumina HumanMethylation450
3.3 years ago by geocarvalho ▴ 350
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8
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1.3k
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Differential DNA methylation for each sample using Illumina HumanMethylation450 BeadChip dataset
R methylation humanmethylation450 limma
updated 3.3 years ago by 8.2k • written 3.3 years ago by ▴ 350
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1.3k
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Comment: C: Differential DNA methylation for each sample using Illumina HumanMethylation450
3.3 years ago by geocarvalho ▴ 350
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4.9k
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Comment: C: Using limma to find differentially methylated probes across clusters
3.4 years ago by geocarvalho ▴ 350
1
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1.7k
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Answer: A: CNV and pseudogenes
3.4 years ago by geocarvalho ▴ 350
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200k
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Comment: C: How To Update R In Ubuntu ?
3.5 years ago by geocarvalho ▴ 350
9
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1
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81k
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Answer: A: Extract Sub-Set Of Regions From Vcf File
updated 3.8 years ago by 40k • written 6.0 years ago by ▴ 350
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2.1k
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Answer: A: Trying to Identify larger indels from NGS data, FASTQ format
4.4 years ago by geocarvalho ▴ 350
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2.2k
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Comment: C: Identifying CNVs from targeted amplicon sequencing
4.6 years ago by geocarvalho ▴ 350
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1
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2.2k
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Comment: C: Identifying CNVs from targeted amplicon sequencing
4.6 years ago by geocarvalho ▴ 350
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17k
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Comment: C: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
4.6 years ago by geocarvalho ▴ 350
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1
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17k
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Comment: C: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
4.6 years ago by geocarvalho ▴ 350
1
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2
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17k
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Comment: C: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
4.6 years ago by geocarvalho ▴ 350
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1.4k
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Answer: A: Annotation tool for cnvKit
4.8 years ago by geocarvalho ▴ 350
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2.5k
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Comment: C: how to fix error in getGEO function?
5.1 years ago by geocarvalho ▴ 350
0
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1
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2.5k
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Comment: C: how to fix error in getGEO function?
updated 5.1 years ago by 34k • written 5.1 years ago by ▴ 350
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1.5k
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Answer: A: Bioinformatics workshop or training courses
5.1 years ago by geocarvalho ▴ 350
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1.2k
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Answer: A: Large deletions in exome sequencing data
5.3 years ago by geocarvalho ▴ 350
2
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1
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2.2k
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Answer: A: Identifying CNVs from targeted amplicon sequencing
5.3 years ago by geocarvalho ▴ 350
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2.7k
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Answer: A: Plotting common SNPs from four individual from a vcf file
5.6 years ago by geocarvalho ▴ 350
2
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2.3k
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Answer: A: R books with Quantitative Genetics examples?
5.6 years ago by geocarvalho ▴ 350
1
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0
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1.3k
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Answer: A: Packages/modules for CNV, Indels, SNPs analysis
5.7 years ago by geocarvalho ▴ 350
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0
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3.6k
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Comment: C: vcfeval Error: No sample name provided but calls is a multi-sample VCF
5.8 years ago by geocarvalho ▴ 350
4
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12k
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Answer: A: List all available databases for ANNOVAR
5.8 years ago by geocarvalho ▴ 350
2
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0
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3.6k
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Answer: A: vcfeval Error: No sample name provided but calls is a multi-sample VCF
5.8 years ago by geocarvalho ▴ 350
0
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1
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1.7k
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Answer: A: How to start analyzing next-generation DNA and RNA sequencing data?
5.9 years ago by geocarvalho ▴ 350
1
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0
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1.5k
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Answer: A: Where can I find a sample analysis pipeline for DNA?
6.4 years ago by geocarvalho ▴ 350
1
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1.9k
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Comment: C: Bioinformatics Data Analyst, University of Pennsylvania, Philadelphia
6.5 years ago by geocarvalho ▴ 350
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1
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1.5k
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Answer: A: Different reference and variant allele in IonTorrent variantCaller
6.5 years ago by geocarvalho ▴ 350
1
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0
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4.4k
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Answer: A: Copy Number Variation Tools
6.5 years ago by geocarvalho ▴ 350
0
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0
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6.1k
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Answer: A: Annotation of Structural Variants and CNVs
6.6 years ago by geocarvalho ▴ 350
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