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508
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Comment: Comment: Using VEP nextflow to add annotation to VCF
7 months ago by halo22 ▴ 290
0
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2
replies
508
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Using VEP nextflow to add annotation to VCF
wgs vep annotation
7 months ago by halo22 ▴ 290
0
votes
0
replies
182
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WGS based variant analysis for biomarkers
WGS sequencing statistics
8 months ago by halo22 ▴ 290
3
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4
replies
2.9k
views
Reading methylation without IDAT files downloaded from GEO
Methylation Gene expression omnibus GEO minfi
updated 18 months ago by ▴ 10 • written 4.4 years ago by ▴ 290
1
vote
2
replies
1.2k
views
Why is mapper.pl from mirdeep2 producing an empty mapping file?
mirna ngs next-gen
updated 23 months ago by ▴ 10 • written 2.3 years ago by ▴ 290
0
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0
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575
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Comment: Comment: Power analysis to determine sample size for a single-cell sequencing study
24 months ago by halo22 ▴ 290
0
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2
replies
575
views
Power analysis to determine sample size for a single-cell sequencing study
sequencing single-cell
24 months ago by halo22 ▴ 290
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0
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1.6k
views
Comment: C: Mixed Linear Model and GWAS study
2.0 years ago by halo22 ▴ 290
0
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1
reply
391
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Comment: C: Identifiying SNP frequencies for very specific subpopulations on dbSNP
2.0 years ago by halo22 ▴ 290
0
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0
replies
865
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Comment: C: chi squared assesment of gene expression and batch effect
2.0 years ago by halo22 ▴ 290
0
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2
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528
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Comment: A: Is it possible to get SARS-CoV-2 sequences from https://outbreak.info/?
updated 2.0 years ago by 38k • written 2.0 years ago by ▴ 290
0
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1
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865
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Answer: A: chi squared assesment of gene expression and batch effect
2.0 years ago by halo22 ▴ 290
1
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1
reply
1.2k
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Comment: C: genes underlying gseGO categories
2.0 years ago by halo22 ▴ 290
2
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1
reply
1.2k
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Answer: A: genes underlying gseGO categories
2.0 years ago by halo22 ▴ 290
2
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0
replies
3.6k
views
Comment: C: Differential protein/biomarker expression using limma: is that possible?
2.0 years ago by halo22 ▴ 290
0
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0
replies
532
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Answer: A: Is mutation activating or inactivating?
2.0 years ago by halo22 ▴ 290
0
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1
reply
3.6k
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Answer: A: Differential protein/biomarker expression using limma: is that possible?
2.0 years ago by halo22 ▴ 290
0
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0
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471
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Comment: A: The problems when i map to genome by mapper.pl in miRDeep2
2.0 years ago by halo22 ▴ 290
0
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0
replies
850
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Comment: C: ConsensusClusterPlus: How to extract most contributing features for each cluster
2.0 years ago by halo22 ▴ 290
0
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0
replies
1.3k
views
Answer: A: Making plots for enrichment and KEGG results
2.0 years ago by halo22 ▴ 290
0
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1
reply
469
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Answer: A: Linear regression on genotype data
2.0 years ago by halo22 ▴ 290
1
vote
1
reply
789
views
Answer: A: clusterProfiler Results not showing
2.0 years ago by halo22 ▴ 290
1
vote
1
reply
468
views
Do read group names have effect on marking duplicates using GATK?
Picard NGS WGS
2.2 years ago by halo22 ▴ 290
0
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1
reply
972
views
Comment: C: Adding read group (@RG) information when there are multiple ID's.
2.2 years ago by halo22 ▴ 290
4
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3
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972
views
Adding read group (@RG) information when there are multiple ID's.
next-gen alignment
updated 2.2 years ago by 47k • written 2.2 years ago by ▴ 290
0
votes
1
reply
1.1k
views
Ancestry prediction for non-related samples from a VCF file
next-gen sequencing peddy ancestry
updated 2.3 years ago by • 0 • written 2.6 years ago by ▴ 290
0
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0
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1.3k
views
Trimmomatic(0.39) java error [Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: 1]
sequence
2.4 years ago by halo22 ▴ 290
1
vote
0
replies
2.4k
views
Answer: A: RNAseq Variance calculation
2.6 years ago by halo22 ▴ 290
5
votes
3
replies
5.7k
views
How To Parse Data From An Owl File
perl ontology
updated 2.6 years ago by 20 • written 11.0 years ago by ▴ 290
0
votes
1
reply
701
views
Regression Analysis between RNA-seq data and expression measured from ELISA
RNA-Seq
2.6 years ago by halo22 ▴ 290
0
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0
replies
819
views
Comment: C: DESeq2 Anova type comparison and Pvalues.
2.7 years ago by halo22 ▴ 290
2
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2
replies
819
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DESeq2 Anova type comparison and Pvalues.
deseq2 RNA-Seq rna
2.7 years ago by halo22 ▴ 290
4
votes
3
replies
2.8k
views
Integrating WGS and RNA-seq data
RNA-Seq genome next-gen
updated 3.1 years ago by • 0 • written 6.7 years ago by ▴ 290
4
votes
5
replies
4.6k
views
Marker genes for different cell types
singlecell RNA RNA-Seq
updated 3.1 years ago by ▴ 190 • written 5.7 years ago by ▴ 290
1
vote
5
replies
873
views
Tool to check what alternate allele is dominant across samples per line of the VCF file.
next-gen WGS
updated 3.1 years ago by 10.0k • written 3.2 years ago by ▴ 290
0
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0
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873
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Comment: C: Tool to check what alternate allele is dominant across samples per line of the V
3.1 years ago by halo22 ▴ 290
0
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1
reply
961
views
GC overhead error [java.lang.OutOfMemoryError] while running snpEFF version 4.1
next-gen snpeff
3.4 years ago by halo22 ▴ 290
1
vote
2
replies
1.4k
views
How to use limma for a categorial outcome variable? Where outcome is the cohort status and predictor is gene expression.
next-gen RNA RNA-Seq limma
updated 3.5 years ago by 20 • written 4.0 years ago by ▴ 290
0
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0
replies
2.9k
views
Comment: C: Reading methylation without IDAT files downloaded from GEO
4.4 years ago by halo22 ▴ 290
0
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0
replies
1.2k
views
Analyzing data produced by the UMI based SCRB-seq (Soumillon et al. 2014) protocol.
RNA-Seq next-gen
updated 4.6 years ago by 20 • written 4.6 years ago by ▴ 290
2
votes
2
replies
710
views
Turning transcript estimate to gene level estimates
rna-seq next-gen
updated 4.6 years ago by 103k • written 4.6 years ago by ▴ 290
0
votes
1
reply
1.2k
views
Generating a gene expression matrix from Picard *duplicates_marked.bam file
rna-seq
4.6 years ago by halo22 ▴ 290
0
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1
reply
1.8k
views
10X based Single cell sequencing for comparing two different disease states
single cell RNA-Seq
updated 4.7 years ago by 13k • written 4.7 years ago by ▴ 290
4
votes
6
replies
5.6k
views
Enrichr analysis using ranked gene list
pathway analysis genome RNA enrichr
updated 5.2 years ago by ▴ 10 • written 5.8 years ago by ▴ 290
1
vote
1
reply
1.8k
views
Appropriate DESeq2 design for multi-factor comparison within group?
RNA-Seq DESeq2
updated 5.4 years ago by 13k • written 5.4 years ago by ▴ 290
0
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0
replies
5.6k
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Comment: C: Enrichr analysis using ranked gene list
5.5 years ago by halo22 ▴ 290
0
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1
reply
5.6k
views
Comment: C: Enrichr analysis using ranked gene list
5.5 years ago by halo22 ▴ 290
2
votes
1
reply
2.9k
views
Time series comparison with DESEQ2
RNA RNA-Seq next-gen
updated 5.5 years ago by 20 • written 5.6 years ago by ▴ 290
0
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3
replies
11k
views
Answer: A: Finding Variable Genes in Seurat, scRNA-seq
5.5 years ago by halo22 ▴ 290
1
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1
reply
9.6k
views
Answer: A: Making a 3d tSNE Plot in Seurat for scRNA-seq
5.5 years ago by halo22 ▴ 290
82 results • Page 1 of 2
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