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1
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351
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Deconvolution: bulk and cell signature data from different platforms or technologies
CIBERSORT
RNASeq
Microarray
deconvolution
signature
9 months ago by
zhang.jianhai
▴ 30
0
votes
0
replies
978
views
Comment:
Comment: Single-cell RNA Seq on whole organ or whole tissue with known cell origins
3.3 years ago by
zhang.jianhai
▴ 30
1
vote
2
replies
978
views
Single-cell RNA Seq on whole organ or whole tissue with known cell origins
known-cell-origin
whole-organ
single-cell-RNA-Seq
whole-tissue
3.3 years ago by
zhang.jianhai
▴ 30
0
votes
1
reply
882
views
Filter RNA-seq matrix
rna-seq
cv
updated 4.8 years ago by
Biostar
20 • written 4.9 years ago by
zhang.jianhai
▴ 30
0
votes
0
replies
3.6k
views
Comment:
C: RPKM/CPM/FPKM to log2 units
4.9 years ago by
zhang.jianhai
▴ 30
0
votes
1
reply
3.6k
views
Comment:
C: RPKM/CPM/FPKM to log2 units
4.9 years ago by
zhang.jianhai
▴ 30
5
votes
4
replies
3.6k
views
RPKM/CPM/FPKM to log2 units
RPKM
log2
updated 4.9 years ago by
dsull
★ 6.9k • written 4.9 years ago by
zhang.jianhai
▴ 30
0
votes
0
replies
628
views
Gene network module identification methods
gene network module
4.9 years ago by
zhang.jianhai
▴ 30
0
votes
10
replies
5.5k
views
functional enichment with custom gene annotation
enrichment
updated 5.0 years ago by
padwalmk
▴ 140 • written 5.0 years ago by
zhang.jianhai
▴ 30
0
votes
0
replies
962
views
Comment:
C: Well studied gene networks/pathways in rice
5.0 years ago by
zhang.jianhai
▴ 30
0
votes
1
reply
5.5k
views
Comment:
C: functional enichment with custom gene annotation
5.0 years ago by
zhang.jianhai
▴ 30
0
votes
0
replies
5.5k
views
Comment:
C: functional enichment with custom gene annotation
5.0 years ago by
zhang.jianhai
▴ 30
1
vote
4
replies
962
views
Well studied gene networks/pathways in rice
pathway
rice
5.0 years ago by
zhang.jianhai
▴ 30
0
votes
1
reply
962
views
Comment:
C: Well studied networks/pathways in rice
5.0 years ago by
zhang.jianhai
▴ 30
0
votes
1
reply
5.5k
views
Comment:
C: functional enichment with custom gene annotation
5.0 years ago by
zhang.jianhai
▴ 30
0
votes
0
replies
5.5k
views
Comment:
C: functional enichment with custom gene annotation
5.0 years ago by
zhang.jianhai
▴ 30
0
votes
1
reply
872
views
Enrichment of pathways, reactome, known networks in rice
pathway
reactome
known networks
rice
5.0 years ago by
zhang.jianhai
▴ 30
0
votes
1
reply
2.1k
views
Comment:
C: Network construction methods using Bayesian Network or mutual information
5.8 years ago by
zhang.jianhai
▴ 30
0
votes
0
replies
1.4k
views
Comment:
C: Partial correlation matrix and gene cluster
5.8 years ago by
zhang.jianhai
▴ 30
2
votes
6
replies
2.1k
views
Network construction methods using Bayesian Network or mutual information
gene network
Bayesian network
mutual information
5.8 years ago by
zhang.jianhai
▴ 30
4
votes
2
replies
1.4k
views
Partial correlation matrix and gene cluster
partial correlation matrix
gene network
updated 5.8 years ago by
Jean-Karim Heriche
27k • written 5.8 years ago by
zhang.jianhai
▴ 30
0
votes
0
replies
2.6k
views
Comment:
C: How to plot two networks with overlapping nodes?
6.5 years ago by
zhang.jianhai
▴ 30
0
votes
1
reply
2.6k
views
Comment:
C: How to plot two networks with overlapping nodes?
6.5 years ago by
zhang.jianhai
▴ 30
1
vote
4
replies
2.6k
views
How to plot two networks with overlapping nodes?
network
6.5 years ago by
zhang.jianhai
▴ 30
8
votes
14
replies
7.3k
views
7 follow
GO enrichment analysis with human ENSEMBL ids
R
RNA-Seq
ensembl
GO enrichment
edgeR
updated 7.4 years ago by
Nan Xiao
• 0 • written 7.5 years ago by
zhang.jianhai
▴ 30
0
votes
1
reply
2.6k
views
DiffCorr: cannot run Bellman-Ford algorithm, Negative loop detected while calculating shortest paths
Pacakge
DiffCorr
graph clustering
updated 7.4 years ago by
Jean-Karim Heriche
27k • written 7.4 years ago by
zhang.jianhai
▴ 30
0
votes
1
reply
7.3k
views
Comment:
C: GO enrichment analysis with human ENSEMBL ids
7.5 years ago by
zhang.jianhai
▴ 30
0
votes
3
replies
7.3k
views
Comment:
A: GO enrichment analysis with human ENSEMBL ids
7.5 years ago by
zhang.jianhai
▴ 30
0
votes
1
reply
7.3k
views
Comment:
A: Mapping among ENSEMBL Entrez and RefSeq.
7.5 years ago by
zhang.jianhai
▴ 30
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