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Deconvolution: bulk and cell signature data from different platforms or technologies
CIBERSORT RNASeq Microarray deconvolution signature
16 months ago by zhang.jianhai ▴ 30
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0
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1.2k
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Comment: Comment: Single-cell RNA Seq on whole organ or whole tissue with known cell origins
3.8 years ago by zhang.jianhai ▴ 30
1
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2
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1.2k
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Single-cell RNA Seq on whole organ or whole tissue with known cell origins
known-cell-origin whole-organ single-cell-RNA-Seq whole-tissue
3.8 years ago by zhang.jianhai ▴ 30
0
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1
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945
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Filter RNA-seq matrix
rna-seq cv
updated 5.4 years ago by 20 • written 5.4 years ago by ▴ 30
0
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0
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3.9k
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Comment: C: RPKM/CPM/FPKM to log2 units
5.5 years ago by zhang.jianhai ▴ 30
0
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1
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3.9k
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Comment: C: RPKM/CPM/FPKM to log2 units
5.5 years ago by zhang.jianhai ▴ 30
5
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4
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3.9k
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RPKM/CPM/FPKM to log2 units
RPKM log2
updated 5.5 years ago by ★ 7.6k • written 5.5 years ago by ▴ 30
0
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0
replies
691
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Gene network module identification methods
gene network module
5.5 years ago by zhang.jianhai ▴ 30
0
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10
replies
6.7k
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functional enichment with custom gene annotation
enrichment
updated 5.5 years ago by ▴ 140 • written 5.5 years ago by ▴ 30
0
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0
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1.1k
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Comment: C: Well studied gene networks/pathways in rice
5.5 years ago by zhang.jianhai ▴ 30
0
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1
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6.7k
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Comment: C: functional enichment with custom gene annotation
5.5 years ago by zhang.jianhai ▴ 30
0
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0
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6.7k
views
Comment: C: functional enichment with custom gene annotation
5.5 years ago by zhang.jianhai ▴ 30
1
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4
replies
1.1k
views
Well studied gene networks/pathways in rice
pathway rice
5.5 years ago by zhang.jianhai ▴ 30
0
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1
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1.1k
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Comment: C: Well studied networks/pathways in rice
5.5 years ago by zhang.jianhai ▴ 30
0
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1
reply
6.7k
views
Comment: C: functional enichment with custom gene annotation
5.5 years ago by zhang.jianhai ▴ 30
0
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0
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6.7k
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Comment: C: functional enichment with custom gene annotation
5.5 years ago by zhang.jianhai ▴ 30
0
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1
reply
991
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Enrichment of pathways, reactome, known networks in rice
pathway reactome known networks rice
5.6 years ago by zhang.jianhai ▴ 30
0
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1
reply
2.3k
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Comment: C: Network construction methods using Bayesian Network or mutual information
6.3 years ago by zhang.jianhai ▴ 30
0
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0
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1.6k
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Comment: C: Partial correlation matrix and gene cluster
6.3 years ago by zhang.jianhai ▴ 30
2
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6
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2.3k
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Network construction methods using Bayesian Network or mutual information
gene network Bayesian network mutual information
6.3 years ago by zhang.jianhai ▴ 30
4
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2
replies
1.6k
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Partial correlation matrix and gene cluster
partial correlation matrix gene network
updated 6.3 years ago by 27k • written 6.3 years ago by ▴ 30
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0
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2.8k
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Comment: C: How to plot two networks with overlapping nodes?
7.0 years ago by zhang.jianhai ▴ 30
0
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1
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2.8k
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Comment: C: How to plot two networks with overlapping nodes?
7.0 years ago by zhang.jianhai ▴ 30
1
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4
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2.8k
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How to plot two networks with overlapping nodes?
network
7.0 years ago by zhang.jianhai ▴ 30
8
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14
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8.2k
views
7 follow
GO enrichment analysis with human ENSEMBL ids
R RNA-Seq ensembl GO enrichment edgeR
updated 8.0 years ago by • 0 • written 8.1 years ago by ▴ 30
0
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1
reply
2.7k
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DiffCorr: cannot run Bellman-Ford algorithm, Negative loop detected while calculating shortest paths
Pacakge DiffCorr graph clustering
updated 8.0 years ago by 27k • written 8.0 years ago by ▴ 30
0
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1
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8.2k
views
Comment: C: GO enrichment analysis with human ENSEMBL ids
8.1 years ago by zhang.jianhai ▴ 30
0
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3
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8.2k
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Comment: A: GO enrichment analysis with human ENSEMBL ids
8.1 years ago by zhang.jianhai ▴ 30
0
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1
reply
8.2k
views
Comment: A: Mapping among ENSEMBL Entrez and RefSeq.
8.1 years ago by zhang.jianhai ▴ 30
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