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Seurat/Signac multiome analysis filtering on nCounts instead of nFeatures
10x Signac Seurat multiome
7 weeks ago by yura.grabovska ▴ 690
8
votes
3
replies
593
views
What's going on with Ensembl?
biomaRt ensembl
updated 10 weeks ago by ▴ 170 • written 12 weeks ago by ▴ 690
0
votes
1
reply
429
views
Seurat Xenium QC
R Xenium spatial Seurat
updated 3 months ago by 6.1k • written 3 months ago by ▴ 690
0
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0
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210
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CODEX/Phenocycler -> QuPath -> Seurat pipeline basic help needed
QuPath CODEX Seurat Phenocycler
3 months ago by yura.grabovska ▴ 690
2
votes
1
reply
990
views
Understanding behaviour of SCTransform in Seurat
Seurat scRNASeq normalization
updated 4 months ago by • 0 • written 8 months ago by ▴ 690
0
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6
replies
630
views
Best practice for gene ontology/pathway/geneset enrichment in 10x data
R Seurat scRNA
updated 4 months ago by ★ 18k • written 4 months ago by ▴ 690
2
votes
6
replies
615
views
Selecting top signature score from signatures with different distributions
R classification distributions
updated 6 months ago by 4.7k • written 6 months ago by ▴ 690
0
votes
5
replies
526
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Suggestions for resource for running R training
R environments training
updated 6 months ago by ★ 2.1k • written 6 months ago by ▴ 690
0
votes
0
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270
views
Clustering single-cell CNV data
R clustering infercnv CNV scRNA
6 months ago by yura.grabovska ▴ 690
0
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0
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267
views
Interpreting cNMF with 2 equivalent best ranks
python cNMF
6 months ago by yura.grabovska ▴ 690
0
votes
3
replies
732
views
QC filtering for 10x Single Cell Gene Expression Flex Fixed RNA Profiling
10x Seurat scRNA-Seq
7 months ago by yura.grabovska ▴ 690
0
votes
1
reply
994
views
Seurat v5 and how to correctly integrate across multiple experiments
Seurat scRNA R
updated 8 months ago by ★ 3.0k • written 8 months ago by ▴ 690
1
vote
1
reply
644
views
Dealing with very large gene-lists in GSEA
R fgsea GSEA
updated 22 months ago by ★ 1.8k • written 22 months ago by ▴ 690
0
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0
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471
views
How to format matrix with negative values for NMF in R
nmf R matrix
23 months ago by yura.grabovska ▴ 690
0
votes
0
replies
556
views
Most appropriate method to analysing multi-plate single concentration drug screening
statistics screening drug
2.2 years ago by yura.grabovska ▴ 690
0
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0
replies
405
views
SinEx DB 2.0 local version
SEG exons genes
2.3 years ago by yura.grabovska ▴ 690
0
votes
0
replies
365
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Annotate peptide sequence with source exon
protein R biomaRt
updated 2.4 years ago by 148k • written 2.4 years ago by ▴ 690
7
votes
2
replies
1.9k
views
Retrieve and count variable barcodes from pooled sequencing fastq
NGS fastq barcodes
updated 3.2 years ago by 8.7k • written 3.2 years ago by ▴ 690
1
vote
2
replies
822
views
Automatically annotate drugs for their targets
drugs annotation
updated 3.2 years ago by ★ 2.2k • written 3.2 years ago by ▴ 690
6
votes
2
replies
1.3k
views
Is a paired Wilcoxon test appropriate for analysis of CRISPR gene knock-out screen counts?
R gene sequencing
updated 4.3 years ago by 86k • written 4.3 years ago by ▴ 690
0
votes
4
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5.7k
views
Using limma to find differentially methylated probes across clusters
R methylation limma contrasts
7.6 years ago by yura.grabovska ▴ 690
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