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Comment: C: (Galaxy) MACS2 peaks threshold
4.6 years ago by Morris_Chair ▴ 360
0
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1
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2.1k
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Comment: C: (Galaxy) MACS2 peaks threshold
4.6 years ago by Morris_Chair ▴ 360
0
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1
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2.1k
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Comment: C: (Galaxy) MACS2 peaks threshold
4.6 years ago by Morris_Chair ▴ 360
4
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7
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2.1k
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(Galaxy) MACS2 peaks threshold
ChIP-Seq macs2
4.6 years ago by Morris_Chair ▴ 360
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1
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1.3k
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Comment: C: MACS2 and single file for analysis
4.6 years ago by Morris_Chair ▴ 360
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1
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1.3k
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Comment: C: MACS2 and single file for analysis
4.6 years ago by Morris_Chair ▴ 360
0
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1
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1.3k
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Comment: C: MACS2 and single file for analysis
4.6 years ago by Morris_Chair ▴ 360
6
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2
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4.4k
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SLURM on Mac OS
ChIP-Seq
4.6 years ago by Morris_Chair ▴ 360
3
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7
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1.3k
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MACS2 and single file for analysis
ChIP-Seq
4.6 years ago by Morris_Chair ▴ 360
2
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1
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1.2k
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Pheatmap and SD
RNA-Seq
updated 4.6 years ago by 87k • written 4.7 years ago by ▴ 360
1
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0
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15k
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Comment: C: STAR genome index with and/or with out *.gtf annotation
4.6 years ago by Morris_Chair ▴ 360
0
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0
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15k
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Comment: C: STAR genome index with and/or with out *.gtf annotation
4.6 years ago by Morris_Chair ▴ 360
0
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1
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15k
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Comment: C: STAR genome index with and/or with out *.gtf annotation
4.6 years ago by Morris_Chair ▴ 360
0
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1
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7.3k
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Comment: C: Comparing FPKM values in different genes
4.7 years ago by Morris_Chair ▴ 360
0
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1
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7.3k
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Comment: C: Comparing FPKM values in different genes
4.7 years ago by Morris_Chair ▴ 360
0
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1
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7.3k
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Comment: A: Comparing FPKM values in different genes
4.7 years ago by Morris_Chair ▴ 360
0
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0
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1.2k
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Comment: C: Which axis to look for in PCA plot to understand the sample clustering
4.7 years ago by Morris_Chair ▴ 360
4
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1
reply
2.1k
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Salmon GC bias with caution
RNA-Seq salmon
updated 4.7 years ago by 35k • written 4.7 years ago by ▴ 360
0
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1
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1.9k
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Comment: Comment: Metric to use for RNAseq expression matrix
updated 18 days ago by 43k • written 4.8 years ago by ▴ 360
0
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2
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6.0k
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Comment: C: UMAP vs "rigorous" t-SNE
4.8 years ago by Morris_Chair ▴ 360
0
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0
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13k
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Comment: C: GSEA error - After pruning, none of the gene sets passed size thresholds
4.8 years ago by Morris_Chair ▴ 360
0
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1
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4.1k
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Comment: C: Batch effect, how to create a model matrix
4.8 years ago by Morris_Chair ▴ 360
0
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1
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4.1k
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Comment: C: Batch effect, how to create a model matrix
4.8 years ago by Morris_Chair ▴ 360
0
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0
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2.8k
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Comment: C: including batch in design~
4.8 years ago by Morris_Chair ▴ 360
0
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1
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2.8k
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Comment: C: including batch in design~
4.8 years ago by Morris_Chair ▴ 360
0
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1
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2.8k
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Comment: C: including batch in design~
4.8 years ago by Morris_Chair ▴ 360
0
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1
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2.8k
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Comment: C: including batch in design~
4.8 years ago by Morris_Chair ▴ 360
0
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1
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4.8k
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Comment: C: adding batch variable in colData(dds)
4.8 years ago by Morris_Chair ▴ 360
2
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8
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2.8k
views
including batch in design~
DESeq2 RNA-Seq
4.8 years ago by Morris_Chair ▴ 360
0
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0
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1.0k
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Comment: C: Merge DEseq and Cufflinks outputs
4.8 years ago by Morris_Chair ▴ 360
0
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0
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3.3k
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Comment: C: Can you detect novel (non-coding) transcripts using Salmon and the hg38 transcri
4.8 years ago by Morris_Chair ▴ 360
0
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0
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9.0k
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Comment: C: Ballgown Error in file(file, "rt") : invalid 'description' argument
4.8 years ago by Morris_Chair ▴ 360
0
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0
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1.9k
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Comment: C: Setting Up Model in DeSeq2
4.8 years ago by Morris_Chair ▴ 360
0
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1
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9.5k
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Comment: C: annotation - biomaRt - getBM - multiple entrez ID
4.8 years ago by Morris_Chair ▴ 360
0
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1
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3.3k
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Comment: C: Can you detect novel (non-coding) transcripts using Salmon and the hg38 transcri
4.8 years ago by Morris_Chair ▴ 360
0
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0
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3.4k
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Comment: C: Is Ingenuity Pathway Analysis still relevant for analyzing RNA-seq data?
4.8 years ago by Morris_Chair ▴ 360
1
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1
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3.4k
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Answer: A: Is Ingenuity Pathway Analysis still relevant for analyzing RNA-seq data?
4.8 years ago by Morris_Chair ▴ 360
2
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2
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1.1k
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convert MSTRG to human-readable format
RNA-Seq MSTRG
4.8 years ago by Morris_Chair ▴ 360
1
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0
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4.6k
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Comment: C: How to avoid MSTRG from StringTie
4.8 years ago by Morris_Chair ▴ 360
0
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0
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2.2k
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Comment: C: ballgown and pData
4.8 years ago by Morris_Chair ▴ 360
1
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7
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2.2k
views
ballgown and pData
RNA-Seq ballgown
updated 15 months ago by ▴ 100 • written 4.8 years ago by ▴ 360
0
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1
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2.2k
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Comment: C: ballgown and pData
4.8 years ago by Morris_Chair ▴ 360
0
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1
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1.7k
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Comment: C: salmon NumReads inconsistent with depth from --writeMappings?
4.8 years ago by Morris_Chair ▴ 360
0
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1
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1.7k
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Comment: C: salmon NumReads inconsistent with depth from --writeMappings?
4.8 years ago by Morris_Chair ▴ 360
0
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1
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3.2k
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Comment: C: MACS2 result of FDR
4.9 years ago by Morris_Chair ▴ 360
0
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1
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2.4k
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Comment: C: bed graph and IGV
4.9 years ago by Morris_Chair ▴ 360
7
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8
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2.4k
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bed graph and IGV
Chip-seq biostar handbook
4.9 years ago by Morris_Chair ▴ 360
0
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1
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2.4k
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Comment: C: bed graph and IGV
4.9 years ago by Morris_Chair ▴ 360
0
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1
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2.4k
views
Comment: A: bed graph and IGV
4.9 years ago by Morris_Chair ▴ 360
3
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3
replies
1.5k
views
Salmon quasi Index upgrade
RNA-Seq salmon
updated 4.9 years ago by 43k • written 4.9 years ago by ▴ 360
221 results • Page 3 of 5
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