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1.6k
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Comment: C: Error in GATK germline CNV caller
5.1 years ago by newbio17 ▴ 370
4
votes
3
replies
3.5k
views
Regions & Covered BED files for Agilent SureSelect All Exons v2
sureselect agilent v2 bed wxs
5.1 years ago by newbio17 ▴ 370
1
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0
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6.3k
views
Comment: C: How to visualize Boxplot with using fold change values in ggplot2 in R
5.1 years ago by newbio17 ▴ 370
0
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1
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3.7k
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Comment: C: PureCN prepare environment error
5.1 years ago by newbio17 ▴ 370
0
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0
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1.5k
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Comment: C: miRNA - most reliable pipeline for differential expression analysis
5.1 years ago by newbio17 ▴ 370
1
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0
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3.9k
views
Answer: A: Proper fastq pre-processing for extraction of count matrix
5.2 years ago by newbio17 ▴ 370
2
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1
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4.1k
views
Answer: A: Blood Derived Normal RNA_seq samples TCGA
5.2 years ago by newbio17 ▴ 370
0
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0
replies
1.3k
views
Pisces and Octopus on WES
wes variant calling pisces octopus
5.4 years ago by newbio17 ▴ 370
0
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0
replies
5.8k
views
Comment: C: Somatic variant calling with/without matched normal sample (Mutect2)
5.5 years ago by newbio17 ▴ 370
0
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0
replies
1.2k
views
Comment: C: error en trimmomatic
5.5 years ago by newbio17 ▴ 370
0
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1
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5.8k
views
Comment: C: Somatic variant calling with/without matched normal sample (Mutect2)
5.5 years ago by newbio17 ▴ 370
0
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1
reply
5.8k
views
Comment: C: Somatic variant calling with/without matched normal sample (Mutect2)
5.5 years ago by newbio17 ▴ 370
0
votes
1
reply
5.8k
views
Comment: C: Somatic variant calling with/without matched normal sample (Mutect2)
5.5 years ago by newbio17 ▴ 370
0
votes
0
replies
5.8k
views
Comment: C: Somatic variant calling with/without matched normal sample (Mutect2)
5.5 years ago by newbio17 ▴ 370
0
votes
1
reply
5.8k
views
Comment: C: Somatic variant calling with/without matched normal sample (Mutect2)
5.5 years ago by newbio17 ▴ 370
1
vote
15
replies
5.8k
views
Somatic variant calling with/without matched normal sample (Mutect2)
mutect2 wes variant calling gatk
updated 5.5 years ago by ▴ 550 • written 5.6 years ago by ▴ 370
0
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0
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5.8k
views
Comment: C: Somatic variant calling with/without matched normal sample (Mutect2)
5.5 years ago by newbio17 ▴ 370
0
votes
0
replies
1000
views
Comment: C: Mutect2 --enable_clustered_read_position_filter not available in GATK4
5.6 years ago by newbio17 ▴ 370
0
votes
0
replies
1.2k
views
Flat reference vs. pooled reference (unknown target files)
cnvkit
5.6 years ago by newbio17 ▴ 370
1
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1
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1.8k
views
Comment: C: Can one use Venn diagrams for identifying genes that are commonly differentially
5.6 years ago by newbio17 ▴ 370
0
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0
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1.0k
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Comment: C: selecting a transcript for in vivo validation
5.7 years ago by newbio17 ▴ 370
2
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2
replies
1.7k
views
Answer: A: Looking for dbSNP b144 version vcf
5.7 years ago by newbio17 ▴ 370
0
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0
replies
858
views
Comment: C: chromosomal distribution with sequence data
5.7 years ago by newbio17 ▴ 370
2
votes
0
replies
868
views
Answer: A: Download TCGA Published data
5.7 years ago by newbio17 ▴ 370
0
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1
reply
8.3k
views
Answer: A: Somatic variant calling mutect2 tumour only
5.7 years ago by newbio17 ▴ 370
4
votes
3
replies
3.8k
views
Decipering .BAM file from Ion Torrent reads
next-gen sequencing alignment
updated 6.6 years ago by 20 • written 7.1 years ago by ▴ 370
1
vote
1
reply
2.4k
views
Comment: C: Using linear regression to accounting for confounding variables in gene expressi
6.7 years ago by newbio17 ▴ 370
3
votes
3
replies
2.4k
views
Using linear regression to accounting for confounding variables in gene expression data
RNA-Seq linear regression
updated 6.7 years ago by 8.3k • written 6.7 years ago by ▴ 370
0
votes
0
replies
1.8k
views
Comment: C: Correlation analysis between gene expression & tumor purity
6.7 years ago by newbio17 ▴ 370
3
votes
2
replies
1.8k
views
Correlation analysis between gene expression & tumor purity
RNA-Seq tumor purity gene expression correlation
updated 6.7 years ago by 105k • written 6.7 years ago by ▴ 370
0
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1
reply
1.7k
views
Adding RNA-Seq reads from one sequencing experiment to reads from another experiment
RNA-Seq
6.8 years ago by newbio17 ▴ 370
2
votes
2
replies
2.5k
views
Detecting antisense RNA in unstranded RNA-Seq data
RNA-Seq antisense RNA
updated 6.9 years ago by ★ 1.9k • written 6.9 years ago by ▴ 370
3
votes
1
reply
1.5k
views
Differential expression analysis using GFOLD and DESeq2
RNA-Seq deseq2 gfold
updated 6.9 years ago by 89k • written 6.9 years ago by ▴ 370
5
votes
3
replies
3.9k
views
Orientation of reads in .fastq files from RNA-Seq
RNA-Seq Salmon
updated 6.9 years ago by 15k • written 6.9 years ago by ▴ 370
0
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0
replies
3.9k
views
Comment: C: Orientation of reads in .fastq files from RNA-Seq
6.9 years ago by newbio17 ▴ 370
1
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2
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1.4k
views
Visualizing overdispersion for raw RNA-Seq data
RNA-Seq
7.0 years ago by newbio17 ▴ 370
0
votes
0
replies
1.4k
views
Answer: A: Visualizing overdispersion for raw RNA-Seq data
7.0 years ago by newbio17 ▴ 370
0
votes
0
replies
3.8k
views
Comment: C: Decipering .BAM file from Ion Torrent reads
7.1 years ago by newbio17 ▴ 370
3
votes
3
replies
2.8k
views
Appending sequence decoys and virus sequences to reference genome (GRCh38)
Assembly alignment genome
updated 2.4 years ago by • 0 • written 7.2 years ago by ▴ 370
0
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1
reply
2.2k
views
Comment: C: Large number of overlapped genes/transcripts reported by VEP
7.2 years ago by newbio17 ▴ 370
2
votes
3
replies
2.2k
views
Large number of overlapped genes/transcripts reported by VEP
RNA-Seq SNP VEP
7.2 years ago by newbio17 ▴ 370
91 results • Page 2 of 2
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