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4
votes
3
replies
2.8k
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Regions & Covered BED files for Agilent SureSelect All Exons v2
sureselect agilent v2 bed wxs
3.7 years ago by newbio17 ▴ 360
0
votes
0
replies
1.0k
views
Pisces and Octopus on WES
wes variant calling pisces octopus
4.1 years ago by newbio17 ▴ 360
1
vote
15
replies
3.7k
views
Somatic variant calling with/without matched normal sample (Mutect2)
mutect2 wes variant calling gatk
updated 4.1 years ago by ▴ 550 • written 4.2 years ago by ▴ 360
0
votes
0
replies
976
views
Flat reference vs. pooled reference (unknown target files)
cnvkit
4.2 years ago by newbio17 ▴ 360
4
votes
3
replies
3.1k
views
Decipering .BAM file from Ion Torrent reads
next-gen sequencing alignment
updated 5.2 years ago by 20 • written 5.8 years ago by ▴ 360
3
votes
3
replies
2.0k
views
Using linear regression to accounting for confounding variables in gene expression data
RNA-Seq linear regression
updated 5.3 years ago by 8.2k • written 5.3 years ago by ▴ 360
3
votes
2
replies
1.5k
views
Correlation analysis between gene expression & tumor purity
RNA-Seq tumor purity gene expression correlation
updated 5.3 years ago by 104k • written 5.3 years ago by ▴ 360
0
votes
1
reply
1.5k
views
Adding RNA-Seq reads from one sequencing experiment to reads from another experiment
RNA-Seq
5.5 years ago by newbio17 ▴ 360
2
votes
2
replies
2.1k
views
Detecting antisense RNA in unstranded RNA-Seq data
RNA-Seq antisense RNA
updated 5.5 years ago by ★ 1.9k • written 5.5 years ago by ▴ 360
3
votes
1
reply
1.3k
views
Differential expression analysis using GFOLD and DESeq2
RNA-Seq deseq2 gfold
updated 5.5 years ago by 87k • written 5.5 years ago by ▴ 360
5
votes
3
replies
3.3k
views
Orientation of reads in .fastq files from RNA-Seq
RNA-Seq Salmon
updated 5.6 years ago by 14k • written 5.6 years ago by ▴ 360
1
vote
2
replies
1.1k
views
Visualizing overdispersion for raw RNA-Seq data
RNA-Seq
5.6 years ago by newbio17 ▴ 360
3
votes
3
replies
2.2k
views
Appending sequence decoys and virus sequences to reference genome (GRCh38)
Assembly alignment genome
updated 11 months ago by • 0 • written 5.8 years ago by ▴ 360
2
votes
3
replies
1.7k
views
Large number of overlapped genes/transcripts reported by VEP
RNA-Seq SNP VEP
5.8 years ago by newbio17 ▴ 360
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