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Comment: C: Is there a command line tool that can take an alignment fasta and input and outp
6.4 years ago by Joel Wallenius ▴ 220
0
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1
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5.3k
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Comment: C: Is there a command line tool that can take an alignment fasta and input and outp
6.4 years ago by Joel Wallenius ▴ 220
0
votes
0
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5.3k
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Comment: C: Is there a command line tool that can take an alignment fasta and input and outp
6.4 years ago by Joel Wallenius ▴ 220
20
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26
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5.3k
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Is there a command line tool that can take an alignment fasta and input and outputs an image?
alignment fasta image
updated 2.3 years ago by 22k • written 6.4 years ago by ▴ 220
0
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0
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941
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AnnoVar with custom genomes?
AnnoVar Annovar
6.4 years ago by Joel Wallenius ▴ 220
0
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9
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6.6k
views
Calculating FPKM and TPM by hand from htseq-count output?
RNA-Seq rna-seq htseq FPKM TPM
updated 2.3 years ago by 90k • written 6.6 years ago by ▴ 220
0
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0
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2.1k
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Comment: C: Where is the (hg19) reference data for transcript isoforms' relative abundances
6.5 years ago by Joel Wallenius ▴ 220
0
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1
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2.1k
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Comment: C: Where is the (hg19) reference data for transcript isoforms' relative abundances
6.5 years ago by Joel Wallenius ▴ 220
0
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1
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2.1k
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Comment: C: Where is the (hg19) reference data for transcript isoforms' relative abundances
6.5 years ago by Joel Wallenius ▴ 220
2
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7
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2.1k
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Where is the (hg19) reference data for transcript isoforms' relative abundances for each gene?
RNA-Seq transcriptomics isoforms
updated 6.5 years ago by 22k • written 6.5 years ago by ▴ 220
0
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0
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6.6k
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Comment: C: Calculating FPKM and TPM by hand from htseq-count output?
6.6 years ago by Joel Wallenius ▴ 220
0
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1
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6.6k
views
Comment: C: Calculating FPKM and TPM by hand from htseq-count output?
6.6 years ago by Joel Wallenius ▴ 220
0
votes
1
reply
6.6k
views
Comment: C: Calculating FPKM and TPM by hand from htseq-count output?
6.6 years ago by Joel Wallenius ▴ 220
0
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0
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3.1k
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Answer: A: Approximately following the GATK recommended workflow for DNA sequence data, my
6.6 years ago by Joel Wallenius ▴ 220
1
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19
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3.1k
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Approximately following the GATK recommended workflow for DNA sequence data, my mpileup output files are empty
sequencing SNP genome next-gen
6.6 years ago by Joel Wallenius ▴ 220
0
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0
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3.1k
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Comment: C: Approximately following the GATK recommended workflow for DNA sequence data, my
6.6 years ago by Joel Wallenius ▴ 220
0
votes
1
reply
3.1k
views
Comment: C: Approximately following the GATK recommended workflow for DNA sequence data, my
6.6 years ago by Joel Wallenius ▴ 220
0
votes
0
replies
3.1k
views
Comment: C: Approximately following the GATK recommended workflow for DNA sequence data, my
6.6 years ago by Joel Wallenius ▴ 220
0
votes
1
reply
3.1k
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Comment: C: Approximately following the GATK recommended workflow for DNA sequence data, my
6.6 years ago by Joel Wallenius ▴ 220
0
votes
1
reply
3.1k
views
Comment: C: Approximately following the GATK recommended workflow for DNA sequence data, my
6.6 years ago by Joel Wallenius ▴ 220
0
votes
1
reply
3.1k
views
Comment: C: Approximately following the GATK recommended workflow for DNA sequence data, my
6.6 years ago by Joel Wallenius ▴ 220
0
votes
0
replies
3.1k
views
Comment: C: Approximately following the GATK recommended workflow for DNA sequence data, my
6.6 years ago by Joel Wallenius ▴ 220
0
votes
0
replies
3.1k
views
Comment: C: Approximately following the GATK recommended workflow for DNA sequence data, my
6.6 years ago by Joel Wallenius ▴ 220
0
votes
1
reply
3.1k
views
Comment: C: Approximately following the GATK recommended workflow for DNA sequence data, my
6.6 years ago by Joel Wallenius ▴ 220
0
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0
replies
2.1k
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Comment: C: Given a list of RefSeq homo sapiens mRNA transcripts, what is the simplest way t
7.6 years ago by Joel Wallenius ▴ 220
0
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1
reply
2.1k
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Comment: C: Given a list of RefSeq homo sapiens mRNA transcripts, what is the simplest way t
7.6 years ago by Joel Wallenius ▴ 220
2
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5
replies
2.1k
views
Given a list of RefSeq homo sapiens mRNA transcripts, what is the simplest way to get the corresponding sequences from some other related species?
alignment transcriptome orthology
7.6 years ago by Joel Wallenius ▴ 220
2
votes
1
reply
1.5k
views
Interpreting the output of an mRNA structural motif search algorithm
mRNA motif structure
updated 7.8 years ago by ★ 3.2k • written 7.8 years ago by ▴ 220
0
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0
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1.9k
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Comment: C: Given a protein domain, like a TPR or zinc finger or some other one, can you pre
7.8 years ago by Joel Wallenius ▴ 220
0
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2
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1.9k
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Given a protein domain, like a TPR or zinc finger or some other one, can you predict what RNA sequence it binds to?
RNA RBP Protein Affinity
7.8 years ago by Joel Wallenius ▴ 220
0
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0
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4.0k
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Comment: C: Getting MPI to work with MEME suite CPU parallelization in OpenSuse
7.8 years ago by Joel Wallenius ▴ 220
0
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1
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4.0k
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Comment: C: Getting MPI to work with MEME suite CPU parallelization in OpenSuse
7.9 years ago by Joel Wallenius ▴ 220
0
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1
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4.0k
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Comment: C: Getting MPI to work with MEME suite CPU parallelization in OpenSuse
7.9 years ago by Joel Wallenius ▴ 220
0
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1
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4.0k
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Comment: C: Getting MPI to work with MEME suite CPU parallelization in OpenSuse
7.9 years ago by Joel Wallenius ▴ 220
0
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1
reply
4.0k
views
Comment: C: Getting MPI to work with MEME suite CPU parallelization in OpenSuse
7.9 years ago by Joel Wallenius ▴ 220
0
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11
replies
4.0k
views
Getting MPI to work with MEME suite CPU parallelization in OpenSuse
meme mpi parallelization opensuse
updated 7.9 years ago by 36k • written 7.9 years ago by ▴ 220
0
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0
replies
1.8k
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Comment: C: Find all nuclear genes the mRNA of which binds to the CLUH protein for transport
8.0 years ago by Joel Wallenius ▴ 220
0
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0
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1.8k
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Comment: C: Find all nuclear genes the mRNA of which binds to the CLUH protein for transport
8.0 years ago by Joel Wallenius ▴ 220
0
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4
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1.8k
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Find all nuclear genes the mRNA of which binds to the CLUH protein for transport to mitochondria?
mitochondria mRNA transport CLUH
updated 8.0 years ago by 23k • written 8.0 years ago by ▴ 220
0
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6
replies
4.2k
views
The meaning of '0' allele frequency in vcftools output
vcf vcftools MAF allele frequency allele
updated 8.1 years ago by 20 • written 8.1 years ago by ▴ 220
0
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0
replies
3.3k
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Comment: C: Imposing a human reference genome onto a vcf file?
8.1 years ago by Joel Wallenius ▴ 220
0
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0
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3.3k
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Comment: C: Imposing a human reference genome onto a vcf file?
8.1 years ago by Joel Wallenius ▴ 220
2
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8
replies
3.3k
views
Imposing a human reference genome onto a vcf file?
vcf genome sequencing SNP allele
updated 8.1 years ago by 166k • written 8.1 years ago by ▴ 220
0
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1
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3.3k
views
Comment: C: Imposing a human reference genome onto a vcf file?
8.1 years ago by Joel Wallenius ▴ 220
0
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1
reply
3.3k
views
Comment: C: Imposing a human reference genome onto a vcf file?
8.1 years ago by Joel Wallenius ▴ 220
0
votes
0
replies
4.2k
views
Comment: C: The meaning of '0' allele frequency in vcftools output
8.1 years ago by Joel Wallenius ▴ 220
0
votes
1
reply
4.2k
views
Comment: C: The meaning of '0' allele frequency in vcftools output
8.1 years ago by Joel Wallenius ▴ 220
0
votes
1
reply
4.2k
views
Comment: C: The meaning of '0' allele frequency in vcftools output
8.1 years ago by Joel Wallenius ▴ 220
148 results • Page 3 of 3
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