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0
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1
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406
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Comment:
Comment: Can you predict the size of a BAM file based on the fasta?
12 months ago by
James Reeve
▴ 130
0
votes
3
replies
406
views
Can you predict the size of a BAM file based on the fasta?
storage
mapping
bam
updated 12 months ago by
Kevin Blighe
81k • written 12 months ago by
James Reeve
▴ 130
0
votes
0
replies
4.5k
views
Comment:
C: Calculate Fis (inbreeding coefficient)
3.0 years ago by
James Reeve
▴ 130
0
votes
0
replies
1.0k
views
PopGenome: What's the difference between two ways of checking population?
popgenome
R
updated 3.0 years ago by
Biostar
20 • written 3.1 years ago by
James Reeve
▴ 130
1
vote
1
reply
747
views
How do I multithread PoPoolation?
PoPoolation
optimization
3.1 years ago by
James Reeve
▴ 130
0
votes
1
reply
1.3k
views
Comment:
C: What is the GMAP GFF3 score?
3.2 years ago by
James Reeve
▴ 130
0
votes
3
replies
1.3k
views
What is the GMAP GFF3 score?
gmap
gff3
3.2 years ago by
James Reeve
▴ 130
0
votes
1
reply
23k
views
Comment:
C: extract only geneID and gene symbol from GTF file
3.3 years ago by
James Reeve
▴ 130
0
votes
0
replies
1.6k
views
Comment:
C: Question: Is samtools BAQ redundant after GATK's IndelRealinger
3.3 years ago by
James Reeve
▴ 130
0
votes
1
reply
1.6k
views
Comment:
C: Question: Is samtools BAQ redundant after GATK's IndelRealinger
3.3 years ago by
James Reeve
▴ 130
4
votes
5
replies
1.6k
views
Question: Is samtools BAQ redundant after GATK's IndelRealinger
samtools
indels
3.3 years ago by
James Reeve
▴ 130
2
votes
2
replies
1.5k
views
VarScan: How is the DP score in a .vcf calculated?
VarScan
VCF
updated 3.4 years ago by
igor
12k • written 3.4 years ago by
James Reeve
▴ 130
0
votes
0
replies
2.4k
views
Comment:
C: samtools mpileup keeps making an empty file
3.5 years ago by
James Reeve
▴ 130
0
votes
1
reply
2.4k
views
Comment:
C: samtools mpileup keeps making an empty file
3.5 years ago by
James Reeve
▴ 130
0
votes
1
reply
2.4k
views
Comment:
C: samtools mpileup keeps making an empty file
3.5 years ago by
James Reeve
▴ 130
0
votes
0
replies
2.4k
views
Comment:
C: samtools mpileup keeps making an empty file
3.5 years ago by
James Reeve
▴ 130
0
votes
0
replies
2.4k
views
Comment:
C: samtools mpileup keeps making an empty file
3.5 years ago by
James Reeve
▴ 130
3
votes
11
replies
2.4k
views
samtools mpileup keeps making an empty file
samtools
pileup
updated 3.5 years ago by
gab
▴ 20 • written 3.5 years ago by
James Reeve
▴ 130
0
votes
0
replies
1.7k
views
Comment:
C: Can I get AddOrReplaceReadGroups working for multiple files?
3.7 years ago by
James Reeve
▴ 130
4
votes
3
replies
1.7k
views
Can I get AddOrReplaceReadGroups working for multiple files?
picard tools
bash
updated 3.7 years ago by
Barry Digby
▴ 980 • written 3.7 years ago by
James Reeve
▴ 130
1
vote
1
reply
3.9k
views
How do I chose variant quality filters for a VCF file?
snp
variant filter
3.8 years ago by
James Reeve
▴ 130
1
vote
1
reply
3.2k
views
Comment:
C: Error: Help understand Trimmomatic ZLIB input stream error
3.8 years ago by
James Reeve
▴ 130
0
votes
0
replies
3.2k
views
Comment:
C: Error: Help understand Trimmomatic ZLIB input stream error
3.8 years ago by
James Reeve
▴ 130
0
votes
1
reply
3.2k
views
Comment:
C: Error: Help understand Trimmomatic ZLIB input stream error
3.8 years ago by
James Reeve
▴ 130
0
votes
0
replies
3.2k
views
Comment:
C: Error: Help understand Trimmomatic ZLIB input stream error
3.8 years ago by
James Reeve
▴ 130
0
votes
1
reply
3.2k
views
Comment:
C: Error: Help understand Trimmomatic ZLIB input stream error
3.8 years ago by
James Reeve
▴ 130
0
votes
1
reply
3.2k
views
Comment:
C: Error: Help understand Trimmomatic ZLIB input stream error
3.8 years ago by
James Reeve
▴ 130
2
votes
14
replies
3.2k
views
Error: Help understand Trimmomatic ZLIB input stream error
Trimmomatic
3.8 years ago by
James Reeve
▴ 130
0
votes
0
replies
1.3k
views
How do you get multi-allelic SNP calls form a pooled sequence using GATK?
GATK
SNPcalling
multi-allelic_snp
3.9 years ago by
James Reeve
▴ 130
0
votes
1
reply
1.9k
views
Comment:
C: Locating Multiple Alternate Alleles in gatk.vcf file
3.9 years ago by
James Reeve
▴ 130
0
votes
0
replies
2.0k
views
Comment:
C: GATK SNPs calling multiple sample without any known SNPs database
4.0 years ago by
James Reeve
▴ 130
0
votes
1
reply
1.1k
views
Comment:
C: Does SortSam lead to a loss of data?
4.0 years ago by
James Reeve
▴ 130
0
votes
1
reply
1.1k
views
Comment:
C: Does SortSam lead to a loss of data?
4.0 years ago by
James Reeve
▴ 130
3
votes
5
replies
1.1k
views
Does SortSam lead to a loss of data?
Picard
updated 4.0 years ago by
ATpoint
62k • written 4.0 years ago by
James Reeve
▴ 130
0
votes
1
reply
2.1k
views
Comment:
C: Can someone explain what the -M option in BWA-MEM does?
4.0 years ago by
James Reeve
▴ 130
3
votes
4
replies
2.1k
views
Can someone explain what the -M option in BWA-MEM does?
BWA
alignment
updated 4.0 years ago by
Devon Ryan
102k • written 4.0 years ago by
James Reeve
▴ 130
0
votes
1
reply
2.4k
views
Comment:
C: BQSR vs VQSR
4.1 years ago by
James Reeve
▴ 130
4
votes
3
replies
2.4k
views
BQSR vs VQSR
SNP
GATK
updated 4.1 years ago by
finswimmer
15k • written 4.1 years ago by
James Reeve
▴ 130
30
votes
4
replies
7.6k
views
Genotyping, genotype calling or SNP calling?
SNP
alignment
updated 4.7 years ago by
Kevin Blighe
81k • written 4.7 years ago by
James Reeve
▴ 130
0
votes
1
reply
3.4k
views
Comment:
C: determining appropriate window size for identifying highly differentiated SNPs
4.7 years ago by
James Reeve
▴ 130
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