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Comment: Comment: Can you predict the size of a BAM file based on the fasta?
3 months ago by James Reeve ▴ 130
0
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3
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232
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Can you predict the size of a BAM file based on the fasta?
storage mapping bam
updated 3 months ago by 77k • written 3 months ago by ▴ 130
0
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0
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3.3k
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Comment: C: Calculate Fis (inbreeding coefficient)
2.2 years ago by James Reeve ▴ 130
0
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0
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814
views
PopGenome: What's the difference between two ways of checking population?
popgenome R
updated 2.2 years ago by 20 • written 2.3 years ago by ▴ 130
1
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1
reply
548
views
How do I multithread PoPoolation?
PoPoolation optimization
2.4 years ago by James Reeve ▴ 130
0
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1
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977
views
Comment: C: What is the GMAP GFF3 score?
2.5 years ago by James Reeve ▴ 130
0
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3
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977
views
What is the GMAP GFF3 score?
gmap gff3
2.5 years ago by James Reeve ▴ 130
0
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1
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19k
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Comment: C: extract only geneID and gene symbol from GTF file
2.6 years ago by James Reeve ▴ 130
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0
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1.1k
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Comment: C: Question: Is samtools BAQ redundant after GATK's IndelRealinger
2.6 years ago by James Reeve ▴ 130
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1
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1.1k
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Comment: C: Question: Is samtools BAQ redundant after GATK's IndelRealinger
2.6 years ago by James Reeve ▴ 130
4
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5
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1.1k
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Question: Is samtools BAQ redundant after GATK's IndelRealinger
samtools indels
2.6 years ago by James Reeve ▴ 130
2
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2
replies
1.2k
views
VarScan: How is the DP score in a .vcf calculated?
VarScan VCF
updated 2.7 years ago by 12k • written 2.7 years ago by ▴ 130
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0
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1.7k
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Comment: C: samtools mpileup keeps making an empty file
2.7 years ago by James Reeve ▴ 130
0
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1
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1.7k
views
Comment: C: samtools mpileup keeps making an empty file
2.7 years ago by James Reeve ▴ 130
0
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1
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1.7k
views
Comment: C: samtools mpileup keeps making an empty file
2.7 years ago by James Reeve ▴ 130
0
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0
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1.7k
views
Comment: C: samtools mpileup keeps making an empty file
2.7 years ago by James Reeve ▴ 130
0
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0
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1.7k
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Comment: C: samtools mpileup keeps making an empty file
2.7 years ago by James Reeve ▴ 130
3
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11
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1.7k
views
samtools mpileup keeps making an empty file
samtools pileup
updated 2.7 years ago by ▴ 20 • written 2.7 years ago by ▴ 130
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0
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1.4k
views
Comment: C: Can I get AddOrReplaceReadGroups working for multiple files?
2.9 years ago by James Reeve ▴ 130
4
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3
replies
1.4k
views
Can I get AddOrReplaceReadGroups working for multiple files?
picard tools bash
updated 2.9 years ago by ▴ 750 • written 2.9 years ago by ▴ 130
1
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1
reply
3.5k
views
How do I chose variant quality filters for a VCF file?
snp variant filter
3.1 years ago by James Reeve ▴ 130
1
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1
reply
2.4k
views
Comment: C: Error: Help understand Trimmomatic ZLIB input stream error
3.1 years ago by James Reeve ▴ 130
0
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0
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2.4k
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Comment: C: Error: Help understand Trimmomatic ZLIB input stream error
3.1 years ago by James Reeve ▴ 130
0
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1
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2.4k
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Comment: C: Error: Help understand Trimmomatic ZLIB input stream error
3.1 years ago by James Reeve ▴ 130
0
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0
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2.4k
views
Comment: C: Error: Help understand Trimmomatic ZLIB input stream error
3.1 years ago by James Reeve ▴ 130
0
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1
reply
2.4k
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Comment: C: Error: Help understand Trimmomatic ZLIB input stream error
3.1 years ago by James Reeve ▴ 130
0
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1
reply
2.4k
views
Comment: C: Error: Help understand Trimmomatic ZLIB input stream error
3.1 years ago by James Reeve ▴ 130
2
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14
replies
2.4k
views
Error: Help understand Trimmomatic ZLIB input stream error
Trimmomatic
3.1 years ago by James Reeve ▴ 130
0
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0
replies
1.1k
views
How do you get multi-allelic SNP calls form a pooled sequence using GATK?
GATK SNPcalling multi-allelic_snp
3.2 years ago by James Reeve ▴ 130
0
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1
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1.6k
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Comment: C: Locating Multiple Alternate Alleles in gatk.vcf file
3.2 years ago by James Reeve ▴ 130
0
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0
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1.7k
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Comment: C: GATK SNPs calling multiple sample without any known SNPs database
3.2 years ago by James Reeve ▴ 130
0
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1
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965
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Comment: C: Does SortSam lead to a loss of data?
3.2 years ago by James Reeve ▴ 130
0
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1
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965
views
Comment: C: Does SortSam lead to a loss of data?
3.2 years ago by James Reeve ▴ 130
3
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5
replies
965
views
Does SortSam lead to a loss of data?
Picard
updated 3.2 years ago by 54k • written 3.2 years ago by ▴ 130
0
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1
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1.8k
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Comment: C: Can someone explain what the -M option in BWA-MEM does?
3.3 years ago by James Reeve ▴ 130
3
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4
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1.8k
views
Can someone explain what the -M option in BWA-MEM does?
BWA alignment
updated 3.3 years ago by 100k • written 3.3 years ago by ▴ 130
0
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1
reply
2.0k
views
Comment: C: BQSR vs VQSR
3.3 years ago by James Reeve ▴ 130
4
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3
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2.0k
views
BQSR vs VQSR
SNP GATK
updated 3.3 years ago by 14k • written 3.3 years ago by ▴ 130
29
votes
4
replies
6.7k
views
Genotyping, genotype calling or SNP calling?
SNP alignment
updated 4.0 years ago by 77k • written 4.0 years ago by ▴ 130
0
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1
reply
2.8k
views
Comment: C: determining appropriate window size for identifying highly differentiated SNPs
4.0 years ago by James Reeve ▴ 130
40 results • Page 1 of 1
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