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2
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2
replies
2.1k
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WARN in GATK HaplotypeCaller
GATK HaplotypeCaller SNP
updated 4.8 years ago by 20 • written 7.6 years ago by ▴ 20
0
votes
1
reply
937
views
Public simulated SNP dataset
SNP simulation ChIP-Seq Assembly next-gen
5.6 years ago by Siavash Salek Ardestani ▴ 20
1
vote
1
reply
2.4k
views
Adjusting the Fst values for different sample sizes
SNP Fixation index Population genetic fst
updated 5.7 years ago by ★ 3.0k • written 5.7 years ago by ▴ 20
0
votes
0
replies
1.8k
views
The pooled heterozygosity (Hp) score
SNP VCF genome gene next-gen
6.4 years ago by Siavash Salek Ardestani ▴ 20
0
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0
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1.9k
views
Comment: C: Extracting sample ID and their genotypes
6.9 years ago by Siavash Salek Ardestani ▴ 20
0
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0
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1.9k
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Comment: C: Extracting sample ID and their genotypes
6.9 years ago by Siavash Salek Ardestani ▴ 20
1
vote
7
replies
1.9k
views
Extracting sample ID and their genotypes
SNP ChIP-Seq next-gen
updated 6.9 years ago by ▴ 160 • written 6.9 years ago by ▴ 20
0
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2
replies
1.9k
views
Comment: C: Extracting sample ID and their genotypes
6.9 years ago by Siavash Salek Ardestani ▴ 20
3
votes
3
replies
2.5k
views
Gene symbol list
SNP ChIP-Seq sequence next-gen
updated 7.4 years ago by 36k • written 7.4 years ago by ▴ 20
0
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1
reply
4.1k
views
expected heterozygosity calculation
VCF SNP genome snp
7.5 years ago by Siavash Salek Ardestani ▴ 20
0
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0
replies
3.1k
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Comment: C: variant calling for more than 60 samples using haplotype caller
7.5 years ago by Siavash Salek Ardestani ▴ 20
0
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1
reply
3.1k
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Comment: C: variant calling for more than 60 samples using haplotype caller
7.5 years ago by Siavash Salek Ardestani ▴ 20
0
votes
1
reply
3.1k
views
Comment: C: variant calling for more than 60 samples using haplotype caller
7.5 years ago by Siavash Salek Ardestani ▴ 20
0
votes
1
reply
3.1k
views
Comment: C: variant calling for more than 60 samples using haplotype caller
7.5 years ago by Siavash Salek Ardestani ▴ 20
0
votes
1
reply
3.1k
views
Comment: C: variant calling for more than 60 samples using haplotype caller
7.5 years ago by Siavash Salek Ardestani ▴ 20
0
votes
0
replies
3.1k
views
Comment: C: variant calling for more than 60 samples using haplotype caller
7.5 years ago by Siavash Salek Ardestani ▴ 20
3
votes
13
replies
3.1k
views
variant calling for more than 60 samples using haplotype caller
next-gen SNP snp
7.5 years ago by Siavash Salek Ardestani ▴ 20
0
votes
0
replies
2.4k
views
Comment: C: mapping form different lane
7.5 years ago by Siavash Salek Ardestani ▴ 20
6
votes
5
replies
2.4k
views
mapping form different lane
bwa NGS
updated 7.5 years ago by 15k • written 7.5 years ago by ▴ 20
0
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1
reply
2.4k
views
Comment: C: mapping form different lane
7.5 years ago by Siavash Salek Ardestani ▴ 20
0
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0
replies
2.1k
views
Comment: C: WARN in GATK HaplotypeCaller
7.6 years ago by Siavash Salek Ardestani ▴ 20
13
votes
10
replies
4.6k
views
Number of threads in BWA
BWA NGS alignment
updated 7.6 years ago by ★ 3.0k • written 7.6 years ago by ▴ 20
0
votes
2
replies
4.6k
views
Comment: C: Number of threads in BWA
7.6 years ago by Siavash Salek Ardestani ▴ 20
3
votes
1
reply
1.9k
views
a question about HaplotypeCaller and skipping "indel realignment" and re-calibration" steps
SNP GVCF GATK
updated 7.6 years ago by 105k • written 7.6 years ago by ▴ 20
0
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1
reply
2.9k
views
Comment: C: I want to know is it a true method ?
7.6 years ago by Siavash Salek Ardestani ▴ 20
1
vote
0
replies
2.9k
views
Comment: C: I want to know is it a true method ?
7.6 years ago by Siavash Salek Ardestani ▴ 20
0
votes
1
reply
2.9k
views
Comment: C: I want to know is it a true method ?
7.6 years ago by Siavash Salek Ardestani ▴ 20
0
votes
1
reply
2.9k
views
Comment: C: I want to know is it a true method ?
7.6 years ago by Siavash Salek Ardestani ▴ 20
0
votes
0
replies
2.9k
views
Comment: C: I want to know is it a true method ?
7.6 years ago by Siavash Salek Ardestani ▴ 20
0
votes
1
reply
2.9k
views
Comment: C: I want to know is it a true method ?
updated 7.6 years ago by 154k • written 7.6 years ago by ▴ 20
0
votes
1
reply
2.9k
views
Comment: C: I want to know is it a true method ?
7.6 years ago by Siavash Salek Ardestani ▴ 20
2
votes
16
replies
2.9k
views
I want to know is it a true method ?
vcf SNP realignment
7.6 years ago by Siavash Salek Ardestani ▴ 20
0
votes
4
replies
1.6k
views
can i merge many vcfs or I should do in realignment?
SNP realignment whole genome sequence
updated 7.6 years ago by 20 • written 7.7 years ago by ▴ 20
0
votes
1
reply
1.6k
views
Comment: C: can i merge many vcfs or I should do in realignment?
7.7 years ago by Siavash Salek Ardestani ▴ 20
0
votes
0
replies
1.6k
views
Comment: C: can i merge many vcfs or I should do in realignment?
7.7 years ago by Siavash Salek Ardestani ▴ 20
0
votes
1
reply
6.7k
views
Comment: C: SNP,INDEL counting per chromosomes in vcf
7.8 years ago by Siavash Salek Ardestani ▴ 20
0
votes
2
replies
1.5k
views
cut mt,x and unknown chromosomes
vcf SNP snp
updated 7.8 years ago by 36k • written 7.8 years ago by ▴ 20
0
votes
0
replies
2.7k
views
Comment: C: Error with fastq-dump
7.8 years ago by Siavash Salek Ardestani ▴ 20
0
votes
1
reply
6.7k
views
Comment: C: SNP,INDEL counting per chromosomes in vcf
7.8 years ago by Siavash Salek Ardestani ▴ 20
0
votes
0
replies
6.7k
views
Comment: C: SNP,INDEL counting per chromosomes in vcf
7.8 years ago by Siavash Salek Ardestani ▴ 20
3
votes
16
replies
6.7k
views
SNP,INDEL counting per chromosomes in vcf
snp next-gen SNP vcf
updated 7.8 years ago by 36k • written 7.8 years ago by ▴ 20
0
votes
0
replies
6.7k
views
Comment: C: SNP,INDEL counting per chromosomes in vcf
7.8 years ago by Siavash Salek Ardestani ▴ 20
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