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2
votes
3
replies
213
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clustalo - align milions of short seq, memory issue
memory clustalo
updated 2 days ago by ★ 27k • written 2 days ago by ▴ 120
0
votes
0
replies
213
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Comment: Comment: clustalo - align milions of short seq, memory issue
8 hours ago by emmanouil.a ▴ 120
0
votes
1
reply
331
views
Comment: Comment: CNV benchmarking: Truvari & HG002 SVs v0.6 (GIAB)
8 weeks ago by emmanouil.a ▴ 120
1
vote
3
replies
331
views
CNV benchmarking: Truvari & HG002 SVs v0.6 (GIAB)
benchmarking truvari cnv
updated 8 weeks ago by ▴ 300 • written 8 weeks ago by ▴ 120
0
votes
0
replies
784
views
Answer: Answer: Tower Server configuration for NGS data analysis
9 weeks ago by emmanouil.a ▴ 120
0
votes
0
replies
379
views
Comment: Comment: Fast tool for FASTQ Q30 calculation
9 weeks ago by emmanouil.a ▴ 120
3
votes
2
replies
379
views
Fast tool for FASTQ Q30 calculation
Q30 FASTQ Q20
updated 9 weeks ago by 43k • written 9 weeks ago by ▴ 120
0
votes
1
reply
692
views
Comment: Comment: CRAM file version
3 months ago by emmanouil.a ▴ 120
2
votes
6
replies
692
views
CRAM file version
cram
updated 3 months ago by 43k • written 3 months ago by ▴ 120
0
votes
1
reply
692
views
Comment: Comment: CRAM file version
3 months ago by emmanouil.a ▴ 120
0
votes
0
replies
1.5k
views
Comment: Comment: clustalw warning: Bisectingkmeans(): Can't split cluster no. xx
6 months ago by emmanouil.a ▴ 120
0
votes
1
reply
1.5k
views
Comment: Comment: clustalw warning: Bisectingkmeans(): Can't split cluster no. xx
8 months ago by emmanouil.a ▴ 120
2
votes
3
replies
688
views
CNV benchmarking
CNV Benchmarking
updated 8 months ago by ★ 2.9k • written 8 months ago by ▴ 120
0
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0
replies
688
views
Comment: Comment: CNV benchmarking
8 months ago by emmanouil.a ▴ 120
0
votes
0
replies
309
views
SNP concordance between NGS and SNParray
ngs snparray genotype
12 months ago by emmanouil.a ▴ 120
1
vote
1
reply
392
views
NA14622 data for benchmarking
benchmarking vcf bed GiAB
updated 13 months ago by 141k • written 13 months ago by ▴ 120
0
votes
0
replies
967
views
Comment: Comment: run "sra-human-scrubber" with SLURM
21 months ago by emmanouil.a ▴ 120
0
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1
reply
967
views
Comment: Comment: run "sra-human-scrubber" with SLURM
21 months ago by emmanouil.a ▴ 120
1
vote
4
replies
967
views
run "sra-human-scrubber" with SLURM
slurm sra-human-scrubber
21 months ago by emmanouil.a ▴ 120
0
votes
2
replies
1.1k
views
split vcf, choice
vcf mergedvcf spltvcf
written 6.0 years ago by ▴ 120
0
votes
0
replies
491
views
Custom Bioinformatics pipeline validation - general guidance
pipeline validation
2.4 years ago by emmanouil.a ▴ 120
1
vote
2
replies
1.2k
views
Exclude reads with mate mapped to a different chr
samtools
updated 2.5 years ago by ★ 3.7k • written 2.5 years ago by ▴ 120
0
votes
2
replies
1.1k
views
Unicycler and GNU parallel
Unicycler parallel
2.6 years ago by emmanouil.a ▴ 120
0
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0
replies
1.1k
views
Comment: Comment: Unicycler and GNU parallel
2.6 years ago by emmanouil.a ▴ 120
1
vote
0
replies
4.3k
views
Comment: Comment: Good annotation databases for a VCF file (somatic variants)
2.8 years ago by emmanouil.a ▴ 120
0
votes
0
replies
4.3k
views
Comment: Comment: Good annotation databases for a VCF file (somatic variants)
2.8 years ago by emmanouil.a ▴ 120
0
votes
0
replies
3.6k
views
Comment: Comment: Reproduce Genome in a Bottle analysis from NA12878 fastq?
2.9 years ago by emmanouil.a ▴ 120
0
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1
reply
3.6k
views
Comment: Comment: Reproduce Genome in a Bottle analysis from NA12878 fastq?
2.9 years ago by emmanouil.a ▴ 120
0
votes
1
reply
2.2k
views
Comment: Comment: troubleshooting benchmarking small variants: hap.py and rtg
2.9 years ago by emmanouil.a ▴ 120
0
votes
0
replies
604
views
Read group: ID, PU definition and multi-lane (same sample)
multilane group_read RG
2.9 years ago by emmanouil.a ▴ 120
2
votes
2
replies
4.3k
views
Answer: Answer: Good annotation databases for a VCF file (somatic variants)
2.9 years ago by emmanouil.a ▴ 120
1
vote
1
reply
2.2k
views
Comment: Comment: troubleshooting benchmarking small variants: hap.py and rtg
2.9 years ago by emmanouil.a ▴ 120
0
votes
1
reply
2.2k
views
Comment: Comment: troubleshooting benchmarking small variants: hap.py and rtg
2.9 years ago by emmanouil.a ▴ 120
1
vote
0
replies
2.2k
views
Comment: Comment: troubleshooting benchmarking small variants: hap.py and rtg
2.9 years ago by emmanouil.a ▴ 120
6
votes
9
replies
2.2k
views
troubleshooting benchmarking small variants: hap.py and rtg
benchmarking
updated 2.5 years ago by 22k • written 2.9 years ago by ▴ 120
0
votes
0
replies
1.5k
views
Comment: A: bcftools roh with -e option... never finish
3.3 years ago by emmanouil.a ▴ 120
3
votes
3
replies
1.5k
views
bcftools roh with -e option... never finish
bcftools roh
updated 2.1 years ago by ▴ 50 • written 4.3 years ago by ▴ 120
0
votes
0
replies
747
views
CNVkit: call sex chr - germline analysis
next-gen
updated 3.4 years ago by 43k • written 3.4 years ago by ▴ 120
0
votes
0
replies
961
views
Comment: C: Split reads (fastq) x read barcode sequence (no barcode in RG)
3.4 years ago by emmanouil.a ▴ 120
1
vote
2
replies
961
views
Split reads (fastq) x read barcode sequence (no barcode in RG)
next-gen sequence
updated 3.4 years ago by 141k • written 3.4 years ago by ▴ 120
0
votes
0
replies
725
views
CNVkit intervarls questions
CNVkit
3.4 years ago by emmanouil.a ▴ 120
0
votes
0
replies
701
views
Comment: C: wes uncovered regions: how to link the gene name to the uncovered genome coordin
4.3 years ago by emmanouil.a ▴ 120
9
votes
8
replies
2.6k
views
7 follow
hg38 Ig regions
assembly sequence
updated 12 months ago by • 0 • written 5.1 years ago by ▴ 120
0
votes
1
reply
2.6k
views
Comment: A: hg38 Ig regions
4.3 years ago by emmanouil.a ▴ 120
1
vote
3
replies
701
views
wes uncovered regions: how to link the gene name to the uncovered genome coordinates
next-gen gene
4.3 years ago by emmanouil.a ▴ 120
3
votes
4
replies
3.2k
views
GATK4 training for beginners
GATK4 training
updated 6.1 years ago by ★ 1.2k • written 6.2 years ago by ▴ 120
1
vote
0
replies
3.2k
views
Comment: A: GATK4 training for beginners
6.2 years ago by emmanouil.a ▴ 120
0
votes
0
replies
1.3k
views
Comment: C: an alternative "join" option for annotated-vcf handling in trios
6.2 years ago by emmanouil.a ▴ 120
0
votes
0
replies
1.3k
views
Comment: C: an alternative "join" option for annotated-vcf handling in trios
6.2 years ago by emmanouil.a ▴ 120
0
votes
1
reply
1.3k
views
Comment: C: an alternative "join" option for annotated-vcf handling in trios
6.2 years ago by emmanouil.a ▴ 120
51 results • Page 1 of 2
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