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359
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Comment: Comment: run "sra-human-scrubber" with SLURM
16 days ago by emmanouil.a ▴ 100
0
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1
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359
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Comment: Comment: run "sra-human-scrubber" with SLURM
16 days ago by emmanouil.a ▴ 100
0
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4
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359
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run "sra-human-scrubber" with SLURM
slurm sra-human-scrubber
16 days ago by emmanouil.a ▴ 100
0
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2
replies
886
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split vcf, choice
vcf mergedvcf spltvcf
written 4.3 years ago by ▴ 100
0
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0
replies
242
views
Custom Bioinformatics pipeline validation - general guidance
pipeline validation
8 months ago by emmanouil.a ▴ 100
1
vote
2
replies
500
views
Exclude reads with mate mapped to a different chr
samtools
updated 9 months ago by ★ 3.3k • written 9 months ago by ▴ 100
0
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2
replies
528
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Unicycler and GNU parallel
Unicycler parallel
11 months ago by emmanouil.a ▴ 100
0
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0
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528
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Comment: Comment: Unicycler and GNU parallel
11 months ago by emmanouil.a ▴ 100
1
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0
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1.7k
views
Comment: Comment: Good annotation databases for a VCF file (somatic variants)
13 months ago by emmanouil.a ▴ 100
0
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0
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1.7k
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Comment: Comment: Good annotation databases for a VCF file (somatic variants)
13 months ago by emmanouil.a ▴ 100
0
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0
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2.0k
views
Comment: Comment: Reproduce Genome in a Bottle analysis from NA12878 fastq?
14 months ago by emmanouil.a ▴ 100
0
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1
reply
2.0k
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Comment: Comment: Reproduce Genome in a Bottle analysis from NA12878 fastq?
14 months ago by emmanouil.a ▴ 100
0
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1
reply
950
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Comment: Comment: troubleshooting benchmarking small variants: hap.py and rtg
14 months ago by emmanouil.a ▴ 100
0
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0
replies
370
views
Read group: ID, PU definition and multi-lane (same sample)
multilane group_read RG
14 months ago by emmanouil.a ▴ 100
1
vote
2
replies
1.7k
views
Answer: Answer: Good annotation databases for a VCF file (somatic variants)
14 months ago by emmanouil.a ▴ 100
1
vote
1
reply
950
views
Comment: Comment: troubleshooting benchmarking small variants: hap.py and rtg
14 months ago by emmanouil.a ▴ 100
0
votes
1
reply
950
views
Comment: Comment: troubleshooting benchmarking small variants: hap.py and rtg
14 months ago by emmanouil.a ▴ 100
1
vote
0
replies
950
views
Comment: Comment: troubleshooting benchmarking small variants: hap.py and rtg
14 months ago by emmanouil.a ▴ 100
6
votes
9
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950
views
troubleshooting benchmarking small variants: hap.py and rtg
benchmarking
updated 9 months ago by 20k • written 14 months ago by ▴ 100
0
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0
replies
929
views
Comment: A: bcftools roh with -e option... never finish
20 months ago by emmanouil.a ▴ 100
3
votes
3
replies
929
views
bcftools roh with -e option... never finish
bcftools roh
updated 4 months ago by ▴ 50 • written 2.6 years ago by ▴ 100
0
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0
replies
459
views
CNVkit: call sex chr - germline analysis
next-gen
updated 20 months ago by 36k • written 20 months ago by ▴ 100
0
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0
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553
views
Comment: C: Split reads (fastq) x read barcode sequence (no barcode in RG)
20 months ago by emmanouil.a ▴ 100
1
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2
replies
553
views
Split reads (fastq) x read barcode sequence (no barcode in RG)
next-gen sequence
updated 20 months ago by 119k • written 20 months ago by ▴ 100
0
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0
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472
views
CNVkit intervarls questions
CNVkit
20 months ago by emmanouil.a ▴ 100
0
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0
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425
views
Comment: C: wes uncovered regions: how to link the gene name to the uncovered genome coordin
2.6 years ago by emmanouil.a ▴ 100
9
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7
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1.7k
views
hg38 Ig regions
assembly sequence
2.6 years ago by emmanouil.a ▴ 100
0
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1
reply
1.7k
views
Comment: A: hg38 Ig regions
2.6 years ago by emmanouil.a ▴ 100
1
vote
3
replies
425
views
wes uncovered regions: how to link the gene name to the uncovered genome coordinates
next-gen gene
2.6 years ago by emmanouil.a ▴ 100
3
votes
4
replies
2.8k
views
GATK4 training for beginners
GATK4 training
updated 4.4 years ago by ★ 1.2k • written 4.5 years ago by ▴ 100
1
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0
replies
2.8k
views
Comment: A: GATK4 training for beginners
4.5 years ago by emmanouil.a ▴ 100
0
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0
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845
views
Comment: C: an alternative "join" option for annotated-vcf handling in trios
4.5 years ago by emmanouil.a ▴ 100
0
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0
replies
845
views
Comment: C: an alternative "join" option for annotated-vcf handling in trios
4.5 years ago by emmanouil.a ▴ 100
0
votes
1
reply
845
views
Comment: C: an alternative "join" option for annotated-vcf handling in trios
4.5 years ago by emmanouil.a ▴ 100
0
votes
8
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845
views
an alternative "join" option for annotated-vcf handling in trios
trio vcf
updated 4.5 years ago by 148k • written 4.5 years ago by ▴ 100
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