Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
448
views
Comment: Comment: featurecounts not working on mirbase annotation file
5 months ago by demoraesdiogo2017 ▴ 100
0
votes
2
replies
448
views
featurecounts not working on mirbase annotation file
usegalaxy miRNA-seq
5 months ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
398
views
Comment: Comment: No counts in my RNA-seq data
9 months ago by demoraesdiogo2017 ▴ 100
1
vote
2
replies
398
views
No counts in my RNA-seq data
sRNA e.coli
9 months ago by demoraesdiogo2017 ▴ 100
3
votes
2
replies
451
views
carp reads in my bacterial small RNome
rna-seq
updated 9 months ago by 5.7k • written 9 months ago by ▴ 100
0
votes
0
replies
610
views
Comment: Comment: mirbase does not have miRNA annotation of my species, what are the alternatives?
10 months ago by demoraesdiogo2017 ▴ 100
3
votes
3
replies
610
views
mirbase does not have miRNA annotation of my species, what are the alternatives?
mirbase mirna-seq
10 months ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
296
views
maximum fastq file size in galaxy?
fastq rna-seq usegalaxy
10 months ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
612
views
Comment: Comment: more than one sample in the same fasta file
10 months ago by demoraesdiogo2017 ▴ 100
0
votes
1
reply
612
views
Comment: Comment: more than one sample in the same fasta file
10 months ago by demoraesdiogo2017 ▴ 100
1
vote
5
replies
612
views
more than one sample in the same fasta file
mirnaseq usegalaxy
10 months ago by demoraesdiogo2017 ▴ 100
3
votes
2
replies
730
views
Relative log expression normalization without negative values
rna-seq
updated 15 months ago by 78k • written 15 months ago by ▴ 100
2
votes
3
replies
1.3k
views
96% of reads aligned to the genome, but only 40% to the transcriptome?
rnaseq single-cell
updated 16 months ago by 78k • written 16 months ago by ▴ 100
0
votes
1
reply
595
views
Comment: Comment: 0% adapter bases after demultiplexing 10x data and "undetermined" sample
17 months ago by demoraesdiogo2017 ▴ 100
0
votes
3
replies
595
views
0% adapter bases after demultiplexing 10x data and "undetermined" sample
10x BCLconvert illumina snrnaseq
updated 17 months ago by 136k • written 17 months ago by ▴ 100
4
votes
5
replies
1.2k
views
how to tell if data was log transformed
UPLC
updated 22 months ago by ★ 25k • written 22 months ago by ▴ 100
0
votes
0
replies
1.2k
views
Comment: Comment: how to tell if data was log transformed
22 months ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
278
views
cytoescape enhancedgraphics image export bug
cytoescape enhancedgraphics
22 months ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
444
views
3 questions about module membership vs gene significance
WGCNA
2.4 years ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
1.5k
views
Comment: Comment: WGCNA for RNA-SEQ DATA
2.4 years ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
528
views
high resolution deconvolution problem
cibersort deconvolution rna-seq
2.5 years ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
721
views
Comment: Comment: whole tissue and RNA-seq: can I still study specific cell types?
2.5 years ago by demoraesdiogo2017 ▴ 100
0
votes
1
reply
721
views
Comment: Comment: whole tissue and RNA-seq: can I still study specific cell types?
2.5 years ago by demoraesdiogo2017 ▴ 100
2
votes
4
replies
721
views
whole tissue and RNA-seq: can I still study specific cell types?
WGCNA rnaseq
2.5 years ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
948
views
Comment: Comment: WGCNA module network interpretation
2.5 years ago by demoraesdiogo2017 ▴ 100
0
votes
1
reply
4.0k
views
Comment: Comment: How to export a network of a specific module to Cytoscape - Consensus modules /
2.5 years ago by demoraesdiogo2017 ▴ 100
0
votes
1
reply
4.0k
views
Comment: Comment: How to export a network of a specific module to Cytoscape - Consensus modules /
2.5 years ago by demoraesdiogo2017 ▴ 100
2
votes
2
replies
948
views
WGCNA module network interpretation
network WGCNA
2.5 years ago by demoraesdiogo2017 ▴ 100
5
votes
9
replies
8.4k
views
6 follow
ANOVA for RNA-seq data?
anova RNA-Seq
updated 2.2 years ago by 8.4k • written 4.0 years ago by ▴ 100
14
votes
8
replies
8.9k
views
8 follow
correct way of analyzing cell proportions in singlecell data
single-cell RNaseq
updated 21 months ago by • 0 • written 3.3 years ago by ▴ 100
1
vote
1
reply
685
views
gene expression x phenotype correlation
RNA-Seq
updated 2.7 years ago by ★ 6.5k • written 2.8 years ago by ▴ 100
0
votes
1
reply
641
views
Comment: C: two samples with 0% alignment
2.8 years ago by demoraesdiogo2017 ▴ 100
1
vote
3
replies
641
views
two samples with 0% alignment
galaxy hisat2 RNA-Seq
2.8 years ago by demoraesdiogo2017 ▴ 100
0
votes
1
reply
534
views
Comment: C: anyway to save contaminated samples?
2.8 years ago by demoraesdiogo2017 ▴ 100
2
votes
5
replies
534
views
anyway to save contaminated samples?
RNA-Seq
2.8 years ago by demoraesdiogo2017 ▴ 100
2
votes
2
replies
631
views
blasting unaligned reads on usegalaxy
usegalaxy RNA-Seq hisat2
2.8 years ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
479
views
over represented adapter in reverse but not in forward reads?
RNA-Seq
2.8 years ago by demoraesdiogo2017 ▴ 100
0
votes
1
reply
446
views
clusters with no enrichment?
RNA-Seq
2.9 years ago by demoraesdiogo2017 ▴ 100
0
votes
1
reply
706
views
Seurat merge differing number of rows
seurat
updated 2.9 years ago by 20 • written 2.9 years ago by ▴ 100
0
votes
0
replies
18k
views
Comment: C: How To Associate Cpg Coordinate With The Gene Names Or Entrez Id
3.1 years ago by demoraesdiogo2017 ▴ 100
0
votes
2
replies
20k
views
Comment: A: Differences between FPKM and FPKM-UQ files in gene expression analysis
3.2 years ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
8.9k
views
Comment: C: correct way of analyzing cell proportions in singlecell data
3.3 years ago by demoraesdiogo2017 ▴ 100
1
vote
6
replies
5.2k
views
subscript out of bounds in seurat expression matrix [SOLVED]
seurat
3.3 years ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
5.2k
views
Comment: C: subscript out of bounds in seurat expression matrix
3.3 years ago by demoraesdiogo2017 ▴ 100
0
votes
1
reply
5.2k
views
Comment: C: subscript out of bounds in seurat expression matrix
3.3 years ago by demoraesdiogo2017 ▴ 100
0
votes
1
reply
5.2k
views
Comment: C: subscript out of bounds in seurat expression matrix
3.3 years ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
1.5k
views
Comment: C: Merge enrichement analysis results
3.4 years ago by demoraesdiogo2017 ▴ 100
2
votes
1
reply
3.5k
views
Answer: A: Heatmap from the RNAseq raw count data
3.4 years ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
503
views
comparing ScRNA-seq data from two different studies: should batch effects be corrected with pooled cells or not?
ScRNA-seq
3.4 years ago by demoraesdiogo2017 ▴ 100
0
votes
1
reply
1.5k
views
Answer: A: Merge enrichement analysis results
3.4 years ago by demoraesdiogo2017 ▴ 100
77 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6