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comments
0
votes
0
replies
248
views
Comment:
Comment: No counts in my RNA-seq data
6 weeks ago by
demoraesdiogo2017
▴ 90
1
vote
2
replies
248
views
No counts in my RNA-seq data
sRNA
e.coli
6 weeks ago by
demoraesdiogo2017
▴ 90
3
votes
2
replies
287
views
carp reads in my bacterial small RNome
rna-seq
updated 6 weeks ago by
colindaven
4.6k • written 7 weeks ago by
demoraesdiogo2017
▴ 90
0
votes
0
replies
385
views
Comment:
Comment: mirbase does not have miRNA annotation of my species, what are the alternatives?
8 weeks ago by
demoraesdiogo2017
▴ 90
3
votes
3
replies
385
views
mirbase does not have miRNA annotation of my species, what are the alternatives?
mirbase
mirna-seq
8 weeks ago by
demoraesdiogo2017
▴ 90
0
votes
0
replies
190
views
maximum fastq file size in galaxy?
fastq
rna-seq
usegalaxy
8 weeks ago by
demoraesdiogo2017
▴ 90
0
votes
0
replies
371
views
Comment:
Comment: more than one sample in the same fasta file
9 weeks ago by
demoraesdiogo2017
▴ 90
0
votes
1
reply
371
views
Comment:
Comment: more than one sample in the same fasta file
9 weeks ago by
demoraesdiogo2017
▴ 90
1
vote
5
replies
371
views
more than one sample in the same fasta file
mirnaseq
usegalaxy
9 weeks ago by
demoraesdiogo2017
▴ 90
3
votes
2
replies
406
views
Relative log expression normalization without negative values
rna-seq
updated 7 months ago by
ATpoint
71k • written 7 months ago by
demoraesdiogo2017
▴ 90
2
votes
3
replies
771
views
96% of reads aligned to the genome, but only 40% to the transcriptome?
rnaseq
single-cell
updated 8 months ago by
ATpoint
71k • written 8 months ago by
demoraesdiogo2017
▴ 90
0
votes
1
reply
399
views
Comment:
Comment: 0% adapter bases after demultiplexing 10x data and "undetermined" sample
8 months ago by
demoraesdiogo2017
▴ 90
0
votes
3
replies
399
views
0% adapter bases after demultiplexing 10x data and "undetermined" sample
10x
BCLconvert
illumina
snrnaseq
updated 8 months ago by
GenoMax
127k • written 8 months ago by
demoraesdiogo2017
▴ 90
1
vote
5
replies
711
views
how to tell if data was log transformed
UPLC
updated 14 months ago by
Mensur Dlakic
★ 23k • written 14 months ago by
demoraesdiogo2017
▴ 90
0
votes
0
replies
711
views
Comment:
Comment: how to tell if data was log transformed
14 months ago by
demoraesdiogo2017
▴ 90
0
votes
0
replies
201
views
cytoescape enhancedgraphics image export bug
cytoescape
enhancedgraphics
14 months ago by
demoraesdiogo2017
▴ 90
0
votes
0
replies
359
views
3 questions about module membership vs gene significance
WGCNA
21 months ago by
demoraesdiogo2017
▴ 90
0
votes
0
replies
1.4k
views
Comment:
Comment: WGCNA for RNA-SEQ DATA
21 months ago by
demoraesdiogo2017
▴ 90
0
votes
0
replies
418
views
high resolution deconvolution problem
cibersort
deconvolution
rna-seq
22 months ago by
demoraesdiogo2017
▴ 90
0
votes
0
replies
556
views
Comment:
Comment: whole tissue and RNA-seq: can I still study specific cell types?
22 months ago by
demoraesdiogo2017
▴ 90
0
votes
1
reply
556
views
Comment:
Comment: whole tissue and RNA-seq: can I still study specific cell types?
22 months ago by
demoraesdiogo2017
▴ 90
2
votes
4
replies
556
views
whole tissue and RNA-seq: can I still study specific cell types?
WGCNA
rnaseq
22 months ago by
demoraesdiogo2017
▴ 90
0
votes
0
replies
739
views
Comment:
Comment: WGCNA module network interpretation
22 months ago by
demoraesdiogo2017
▴ 90
0
votes
1
reply
3.4k
views
Comment:
Comment: How to export a network of a specific module to Cytoscape - Consensus modules /
22 months ago by
demoraesdiogo2017
▴ 90
0
votes
1
reply
3.4k
views
Comment:
Comment: How to export a network of a specific module to Cytoscape - Consensus modules /
22 months ago by
demoraesdiogo2017
▴ 90
2
votes
2
replies
739
views
WGCNA module network interpretation
network
WGCNA
22 months ago by
demoraesdiogo2017
▴ 90
5
votes
9
replies
6.7k
views
6 follow
ANOVA for RNA-seq data?
anova
RNA-Seq
updated 19 months ago by
Carlo Yague
8.3k • written 3.3 years ago by
demoraesdiogo2017
▴ 90
14
votes
8
replies
6.8k
views
8 follow
correct way of analyzing cell proportions in singlecell data
single-cell RNaseq
updated 13 months ago by
Deepam
• 0 • written 2.6 years ago by
demoraesdiogo2017
▴ 90
1
vote
1
reply
550
views
gene expression x phenotype correlation
RNA-Seq
updated 2.0 years ago by
Gordon Smyth
★ 5.6k • written 2.1 years ago by
demoraesdiogo2017
▴ 90
0
votes
1
reply
503
views
Comment:
C: two samples with 0% alignment
2.1 years ago by
demoraesdiogo2017
▴ 90
1
vote
3
replies
503
views
two samples with 0% alignment
galaxy
hisat2
RNA-Seq
2.1 years ago by
demoraesdiogo2017
▴ 90
0
votes
1
reply
406
views
Comment:
C: anyway to save contaminated samples?
2.2 years ago by
demoraesdiogo2017
▴ 90
2
votes
5
replies
406
views
anyway to save contaminated samples?
RNA-Seq
2.2 years ago by
demoraesdiogo2017
▴ 90
2
votes
2
replies
528
views
blasting unaligned reads on usegalaxy
usegalaxy
RNA-Seq
hisat2
2.2 years ago by
demoraesdiogo2017
▴ 90
0
votes
0
replies
391
views
over represented adapter in reverse but not in forward reads?
RNA-Seq
2.2 years ago by
demoraesdiogo2017
▴ 90
0
votes
1
reply
368
views
clusters with no enrichment?
RNA-Seq
2.2 years ago by
demoraesdiogo2017
▴ 90
0
votes
1
reply
530
views
Seurat merge differing number of rows
seurat
updated 2.3 years ago by
Biostar
20 • written 2.3 years ago by
demoraesdiogo2017
▴ 90
0
votes
0
replies
17k
views
Comment:
C: How To Associate Cpg Coordinate With The Gene Names Or Entrez Id
2.4 years ago by
demoraesdiogo2017
▴ 90
0
votes
2
replies
18k
views
Comment:
A: Differences between FPKM and FPKM-UQ files in gene expression analysis
2.5 years ago by
demoraesdiogo2017
▴ 90
0
votes
0
replies
6.8k
views
Comment:
C: correct way of analyzing cell proportions in singlecell data
2.6 years ago by
demoraesdiogo2017
▴ 90
1
vote
6
replies
3.7k
views
subscript out of bounds in seurat expression matrix [SOLVED]
seurat
2.6 years ago by
demoraesdiogo2017
▴ 90
0
votes
0
replies
3.7k
views
Comment:
C: subscript out of bounds in seurat expression matrix
2.6 years ago by
demoraesdiogo2017
▴ 90
0
votes
1
reply
3.7k
views
Comment:
C: subscript out of bounds in seurat expression matrix
2.6 years ago by
demoraesdiogo2017
▴ 90
0
votes
1
reply
3.7k
views
Comment:
C: subscript out of bounds in seurat expression matrix
2.6 years ago by
demoraesdiogo2017
▴ 90
0
votes
0
replies
1.0k
views
Comment:
C: Merge enrichement analysis results
2.8 years ago by
demoraesdiogo2017
▴ 90
2
votes
1
reply
2.7k
views
Answer:
A: Heatmap from the RNAseq raw count data
2.8 years ago by
demoraesdiogo2017
▴ 90
0
votes
0
replies
441
views
comparing ScRNA-seq data from two different studies: should batch effects be corrected with pooled cells or not?
ScRNA-seq
2.8 years ago by
demoraesdiogo2017
▴ 90
0
votes
1
reply
1.0k
views
Answer:
A: Merge enrichement analysis results
2.8 years ago by
demoraesdiogo2017
▴ 90
1
vote
1
reply
980
views
GEO COVID-19 accession with no .mtx, .crb or .rds file?
scmRNA
single cell
covid-19
2.8 years ago by
demoraesdiogo2017
▴ 90
0
votes
0
replies
470
views
two questions about drugbank and proposing an update on a pathway
drugbank
kegg
pathway
updated 2.9 years ago by
Ram
38k • written 2.9 years ago by
demoraesdiogo2017
▴ 90
75 results • Page
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