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248
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Comment: Comment: No counts in my RNA-seq data
6 weeks ago by demoraesdiogo2017 ▴ 90
1
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2
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248
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No counts in my RNA-seq data
sRNA e.coli
6 weeks ago by demoraesdiogo2017 ▴ 90
3
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2
replies
287
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carp reads in my bacterial small RNome
rna-seq
updated 6 weeks ago by 4.6k • written 7 weeks ago by ▴ 90
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0
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385
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Comment: Comment: mirbase does not have miRNA annotation of my species, what are the alternatives?
8 weeks ago by demoraesdiogo2017 ▴ 90
3
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3
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385
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mirbase does not have miRNA annotation of my species, what are the alternatives?
mirbase mirna-seq
8 weeks ago by demoraesdiogo2017 ▴ 90
0
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0
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190
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maximum fastq file size in galaxy?
fastq rna-seq usegalaxy
8 weeks ago by demoraesdiogo2017 ▴ 90
0
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0
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371
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Comment: Comment: more than one sample in the same fasta file
9 weeks ago by demoraesdiogo2017 ▴ 90
0
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1
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371
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Comment: Comment: more than one sample in the same fasta file
9 weeks ago by demoraesdiogo2017 ▴ 90
1
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5
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371
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more than one sample in the same fasta file
mirnaseq usegalaxy
9 weeks ago by demoraesdiogo2017 ▴ 90
3
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2
replies
406
views
Relative log expression normalization without negative values
rna-seq
updated 7 months ago by 71k • written 7 months ago by ▴ 90
2
votes
3
replies
771
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96% of reads aligned to the genome, but only 40% to the transcriptome?
rnaseq single-cell
updated 8 months ago by 71k • written 8 months ago by ▴ 90
0
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1
reply
399
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Comment: Comment: 0% adapter bases after demultiplexing 10x data and "undetermined" sample
8 months ago by demoraesdiogo2017 ▴ 90
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3
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399
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0% adapter bases after demultiplexing 10x data and "undetermined" sample
10x BCLconvert illumina snrnaseq
updated 8 months ago by 127k • written 8 months ago by ▴ 90
1
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5
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711
views
how to tell if data was log transformed
UPLC
updated 14 months ago by ★ 23k • written 14 months ago by ▴ 90
0
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0
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711
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Comment: Comment: how to tell if data was log transformed
14 months ago by demoraesdiogo2017 ▴ 90
0
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0
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201
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cytoescape enhancedgraphics image export bug
cytoescape enhancedgraphics
14 months ago by demoraesdiogo2017 ▴ 90
0
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0
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359
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3 questions about module membership vs gene significance
WGCNA
21 months ago by demoraesdiogo2017 ▴ 90
0
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0
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1.4k
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Comment: Comment: WGCNA for RNA-SEQ DATA
21 months ago by demoraesdiogo2017 ▴ 90
0
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0
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418
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high resolution deconvolution problem
cibersort deconvolution rna-seq
22 months ago by demoraesdiogo2017 ▴ 90
0
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0
replies
556
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Comment: Comment: whole tissue and RNA-seq: can I still study specific cell types?
22 months ago by demoraesdiogo2017 ▴ 90
0
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1
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556
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Comment: Comment: whole tissue and RNA-seq: can I still study specific cell types?
22 months ago by demoraesdiogo2017 ▴ 90
2
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4
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556
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whole tissue and RNA-seq: can I still study specific cell types?
WGCNA rnaseq
22 months ago by demoraesdiogo2017 ▴ 90
0
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0
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739
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Comment: Comment: WGCNA module network interpretation
22 months ago by demoraesdiogo2017 ▴ 90
0
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1
reply
3.4k
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Comment: Comment: How to export a network of a specific module to Cytoscape - Consensus modules /
22 months ago by demoraesdiogo2017 ▴ 90
0
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1
reply
3.4k
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Comment: Comment: How to export a network of a specific module to Cytoscape - Consensus modules /
22 months ago by demoraesdiogo2017 ▴ 90
2
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2
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739
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WGCNA module network interpretation
network WGCNA
22 months ago by demoraesdiogo2017 ▴ 90
5
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9
replies
6.7k
views
6 follow
ANOVA for RNA-seq data?
anova RNA-Seq
updated 19 months ago by 8.3k • written 3.3 years ago by ▴ 90
14
votes
8
replies
6.8k
views
8 follow
correct way of analyzing cell proportions in singlecell data
single-cell RNaseq
updated 13 months ago by • 0 • written 2.6 years ago by ▴ 90
1
vote
1
reply
550
views
gene expression x phenotype correlation
RNA-Seq
updated 2.0 years ago by ★ 5.6k • written 2.1 years ago by ▴ 90
0
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1
reply
503
views
Comment: C: two samples with 0% alignment
2.1 years ago by demoraesdiogo2017 ▴ 90
1
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3
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503
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two samples with 0% alignment
galaxy hisat2 RNA-Seq
2.1 years ago by demoraesdiogo2017 ▴ 90
0
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1
reply
406
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Comment: C: anyway to save contaminated samples?
2.2 years ago by demoraesdiogo2017 ▴ 90
2
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5
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406
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anyway to save contaminated samples?
RNA-Seq
2.2 years ago by demoraesdiogo2017 ▴ 90
2
votes
2
replies
528
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blasting unaligned reads on usegalaxy
usegalaxy RNA-Seq hisat2
2.2 years ago by demoraesdiogo2017 ▴ 90
0
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0
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391
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over represented adapter in reverse but not in forward reads?
RNA-Seq
2.2 years ago by demoraesdiogo2017 ▴ 90
0
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1
reply
368
views
clusters with no enrichment?
RNA-Seq
2.2 years ago by demoraesdiogo2017 ▴ 90
0
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1
reply
530
views
Seurat merge differing number of rows
seurat
updated 2.3 years ago by 20 • written 2.3 years ago by ▴ 90
0
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0
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17k
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Comment: C: How To Associate Cpg Coordinate With The Gene Names Or Entrez Id
2.4 years ago by demoraesdiogo2017 ▴ 90
0
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2
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18k
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Comment: A: Differences between FPKM and FPKM-UQ files in gene expression analysis
2.5 years ago by demoraesdiogo2017 ▴ 90
0
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0
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6.8k
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Comment: C: correct way of analyzing cell proportions in singlecell data
2.6 years ago by demoraesdiogo2017 ▴ 90
1
vote
6
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3.7k
views
subscript out of bounds in seurat expression matrix [SOLVED]
seurat
2.6 years ago by demoraesdiogo2017 ▴ 90
0
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0
replies
3.7k
views
Comment: C: subscript out of bounds in seurat expression matrix
2.6 years ago by demoraesdiogo2017 ▴ 90
0
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1
reply
3.7k
views
Comment: C: subscript out of bounds in seurat expression matrix
2.6 years ago by demoraesdiogo2017 ▴ 90
0
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1
reply
3.7k
views
Comment: C: subscript out of bounds in seurat expression matrix
2.6 years ago by demoraesdiogo2017 ▴ 90
0
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0
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1.0k
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Comment: C: Merge enrichement analysis results
2.8 years ago by demoraesdiogo2017 ▴ 90
2
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1
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2.7k
views
Answer: A: Heatmap from the RNAseq raw count data
2.8 years ago by demoraesdiogo2017 ▴ 90
0
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0
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441
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comparing ScRNA-seq data from two different studies: should batch effects be corrected with pooled cells or not?
ScRNA-seq
2.8 years ago by demoraesdiogo2017 ▴ 90
0
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1
reply
1.0k
views
Answer: A: Merge enrichement analysis results
2.8 years ago by demoraesdiogo2017 ▴ 90
1
vote
1
reply
980
views
GEO COVID-19 accession with no .mtx, .crb or .rds file?
scmRNA single cell covid-19
2.8 years ago by demoraesdiogo2017 ▴ 90
0
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0
replies
470
views
two questions about drugbank and proposing an update on a pathway
drugbank kegg pathway
updated 2.9 years ago by 38k • written 2.9 years ago by ▴ 90
75 results • Page 1 of 2
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