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1
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2
replies
1.3k
views
3 questions about module membership vs gene significance
WGCNA
updated 20 months ago by ★ 30k • written 4.4 years ago by ▴ 120
20
votes
9
replies
17k
views
9 follow
correct way of analyzing cell proportions in singlecell data
scRNA-seq single-cell
updated 22 months ago by 45k • written 5.2 years ago by ▴ 120
0
votes
0
replies
1.1k
views
Comment: Comment: featurecounts not working on mirbase annotation file
2.4 years ago by demoraesdiogo2017 ▴ 120
0
votes
2
replies
1.1k
views
featurecounts not working on mirbase annotation file
usegalaxy miRNA-seq
2.4 years ago by demoraesdiogo2017 ▴ 120
0
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0
replies
1.0k
views
Comment: Comment: No counts in my RNA-seq data
2.7 years ago by demoraesdiogo2017 ▴ 120
1
vote
2
replies
1.0k
views
No counts in my RNA-seq data
sRNA e.coli
2.7 years ago by demoraesdiogo2017 ▴ 120
3
votes
2
replies
988
views
carp reads in my bacterial small RNome
rna-seq
updated 2.7 years ago by 8.1k • written 2.7 years ago by ▴ 120
0
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0
replies
1.4k
views
Comment: Comment: mirbase does not have miRNA annotation of my species, what are the alternatives?
2.8 years ago by demoraesdiogo2017 ▴ 120
3
votes
3
replies
1.4k
views
mirbase does not have miRNA annotation of my species, what are the alternatives?
mirbase mirna-seq
2.8 years ago by demoraesdiogo2017 ▴ 120
0
votes
0
replies
682
views
maximum fastq file size in galaxy?
fastq rna-seq usegalaxy
2.8 years ago by demoraesdiogo2017 ▴ 120
0
votes
0
replies
1.5k
views
Comment: Comment: more than one sample in the same fasta file
2.8 years ago by demoraesdiogo2017 ▴ 120
0
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1
reply
1.5k
views
Comment: Comment: more than one sample in the same fasta file
2.8 years ago by demoraesdiogo2017 ▴ 120
1
vote
5
replies
1.5k
views
more than one sample in the same fasta file
mirnaseq usegalaxy
2.8 years ago by demoraesdiogo2017 ▴ 120
3
votes
2
replies
1.7k
views
Relative log expression normalization without negative values
rna-seq
updated 3.2 years ago by 90k • written 3.2 years ago by ▴ 120
2
votes
3
replies
2.8k
views
96% of reads aligned to the genome, but only 40% to the transcriptome?
rnaseq single-cell
updated 3.3 years ago by 90k • written 3.3 years ago by ▴ 120
0
votes
1
reply
1.2k
views
Comment: Comment: 0% adapter bases after demultiplexing 10x data and "undetermined" sample
3.3 years ago by demoraesdiogo2017 ▴ 120
0
votes
3
replies
1.2k
views
0% adapter bases after demultiplexing 10x data and "undetermined" sample
10x BCLconvert illumina snrnaseq
updated 3.3 years ago by 154k • written 3.3 years ago by ▴ 120
4
votes
5
replies
3.2k
views
how to tell if data was log transformed
UPLC
updated 3.8 years ago by ★ 30k • written 3.8 years ago by ▴ 120
0
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0
replies
3.2k
views
Comment: Comment: how to tell if data was log transformed
3.8 years ago by demoraesdiogo2017 ▴ 120
0
votes
0
replies
591
views
cytoescape enhancedgraphics image export bug
cytoescape enhancedgraphics
3.8 years ago by demoraesdiogo2017 ▴ 120
0
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0
replies
2.2k
views
Comment: Comment: WGCNA for RNA-SEQ DATA
4.4 years ago by demoraesdiogo2017 ▴ 120
0
votes
0
replies
1.0k
views
high resolution deconvolution problem
cibersort deconvolution rna-seq
4.4 years ago by demoraesdiogo2017 ▴ 120
0
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0
replies
1.4k
views
Comment: Comment: whole tissue and RNA-seq: can I still study specific cell types?
4.4 years ago by demoraesdiogo2017 ▴ 120
0
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1
reply
1.4k
views
Comment: Comment: whole tissue and RNA-seq: can I still study specific cell types?
4.4 years ago by demoraesdiogo2017 ▴ 120
2
votes
4
replies
1.4k
views
whole tissue and RNA-seq: can I still study specific cell types?
WGCNA rnaseq
4.4 years ago by demoraesdiogo2017 ▴ 120
0
votes
0
replies
1.8k
views
Comment: Comment: WGCNA module network interpretation
4.4 years ago by demoraesdiogo2017 ▴ 120
0
votes
1
reply
5.9k
views
Comment: Comment: How to export a network of a specific module to Cytoscape - Consensus modules /
4.4 years ago by demoraesdiogo2017 ▴ 120
0
votes
1
reply
5.9k
views
Comment: Comment: How to export a network of a specific module to Cytoscape - Consensus modules /
4.4 years ago by demoraesdiogo2017 ▴ 120
2
votes
2
replies
1.8k
views
WGCNA module network interpretation
network WGCNA
4.4 years ago by demoraesdiogo2017 ▴ 120
5
votes
9
replies
13k
views
6 follow
ANOVA for RNA-seq data?
anova RNA-Seq
updated 4.2 years ago by 9.0k • written 6.0 years ago by ▴ 120
1
vote
1
reply
1.2k
views
gene expression x phenotype correlation
RNA-Seq
updated 4.7 years ago by ★ 8.5k • written 4.7 years ago by ▴ 120
0
votes
1
reply
1.2k
views
Comment: C: two samples with 0% alignment
4.8 years ago by demoraesdiogo2017 ▴ 120
1
vote
3
replies
1.2k
views
two samples with 0% alignment
galaxy hisat2 RNA-Seq
4.8 years ago by demoraesdiogo2017 ▴ 120
0
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1
reply
1.0k
views
Comment: C: anyway to save contaminated samples?
4.8 years ago by demoraesdiogo2017 ▴ 120
2
votes
5
replies
1.0k
views
anyway to save contaminated samples?
RNA-Seq
4.8 years ago by demoraesdiogo2017 ▴ 120
2
votes
2
replies
1.2k
views
blasting unaligned reads on usegalaxy
usegalaxy RNA-Seq hisat2
4.8 years ago by demoraesdiogo2017 ▴ 120
0
votes
0
replies
754
views
over represented adapter in reverse but not in forward reads?
RNA-Seq
4.8 years ago by demoraesdiogo2017 ▴ 120
0
votes
1
reply
790
views
clusters with no enrichment?
RNA-Seq
4.8 years ago by demoraesdiogo2017 ▴ 120
0
votes
1
reply
1.3k
views
Seurat merge differing number of rows
seurat
updated 4.9 years ago by 20 • written 4.9 years ago by ▴ 120
0
votes
0
replies
22k
views
Comment: C: How To Associate Cpg Coordinate With The Gene Names Or Entrez Id
5.0 years ago by demoraesdiogo2017 ▴ 120
0
votes
2
replies
25k
views
Comment: A: Differences between FPKM and FPKM-UQ files in gene expression analysis
5.1 years ago by demoraesdiogo2017 ▴ 120
0
votes
0
replies
17k
views
Comment: C: correct way of analyzing cell proportions in singlecell data
5.2 years ago by demoraesdiogo2017 ▴ 120
1
vote
6
replies
11k
views
subscript out of bounds in seurat expression matrix [SOLVED]
seurat
5.2 years ago by demoraesdiogo2017 ▴ 120
0
votes
0
replies
11k
views
Comment: C: subscript out of bounds in seurat expression matrix
5.2 years ago by demoraesdiogo2017 ▴ 120
0
votes
1
reply
11k
views
Comment: C: subscript out of bounds in seurat expression matrix
5.2 years ago by demoraesdiogo2017 ▴ 120
0
votes
1
reply
11k
views
Comment: C: subscript out of bounds in seurat expression matrix
5.2 years ago by demoraesdiogo2017 ▴ 120
0
votes
0
replies
3.5k
views
Comment: C: Merge enrichement analysis results
5.4 years ago by demoraesdiogo2017 ▴ 120
2
votes
1
reply
5.7k
views
Answer: A: Heatmap from the RNAseq raw count data
5.4 years ago by demoraesdiogo2017 ▴ 120
0
votes
0
replies
767
views
comparing ScRNA-seq data from two different studies: should batch effects be corrected with pooled cells or not?
ScRNA-seq
5.4 years ago by demoraesdiogo2017 ▴ 120
0
votes
1
reply
3.5k
views
Answer: A: Merge enrichement analysis results
5.4 years ago by demoraesdiogo2017 ▴ 120
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