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275
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Comment: Comment: No counts in my RNA-seq data
3 months ago by demoraesdiogo2017 ▴ 90
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2
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275
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No counts in my RNA-seq data
sRNA e.coli
3 months ago by demoraesdiogo2017 ▴ 90
3
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2
replies
328
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carp reads in my bacterial small RNome
rna-seq
updated 3 months ago by 4.8k • written 3 months ago by ▴ 90
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0
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433
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Comment: Comment: mirbase does not have miRNA annotation of my species, what are the alternatives?
3 months ago by demoraesdiogo2017 ▴ 90
3
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3
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433
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mirbase does not have miRNA annotation of my species, what are the alternatives?
mirbase mirna-seq
3 months ago by demoraesdiogo2017 ▴ 90
0
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0
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211
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maximum fastq file size in galaxy?
fastq rna-seq usegalaxy
3 months ago by demoraesdiogo2017 ▴ 90
0
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0
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407
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Comment: Comment: more than one sample in the same fasta file
4 months ago by demoraesdiogo2017 ▴ 90
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1
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407
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Comment: Comment: more than one sample in the same fasta file
4 months ago by demoraesdiogo2017 ▴ 90
1
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5
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407
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more than one sample in the same fasta file
mirnaseq usegalaxy
4 months ago by demoraesdiogo2017 ▴ 90
3
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2
replies
469
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Relative log expression normalization without negative values
rna-seq
updated 9 months ago by 72k • written 9 months ago by ▴ 90
2
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3
replies
893
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96% of reads aligned to the genome, but only 40% to the transcriptome?
rnaseq single-cell
updated 10 months ago by 72k • written 10 months ago by ▴ 90
0
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1
reply
428
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Comment: Comment: 0% adapter bases after demultiplexing 10x data and "undetermined" sample
10 months ago by demoraesdiogo2017 ▴ 90
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3
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428
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0% adapter bases after demultiplexing 10x data and "undetermined" sample
10x BCLconvert illumina snrnaseq
updated 10 months ago by 129k • written 10 months ago by ▴ 90
1
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5
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831
views
how to tell if data was log transformed
UPLC
updated 16 months ago by ★ 23k • written 16 months ago by ▴ 90
0
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0
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831
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Comment: Comment: how to tell if data was log transformed
16 months ago by demoraesdiogo2017 ▴ 90
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0
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211
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cytoescape enhancedgraphics image export bug
cytoescape enhancedgraphics
16 months ago by demoraesdiogo2017 ▴ 90
0
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0
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374
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3 questions about module membership vs gene significance
WGCNA
23 months ago by demoraesdiogo2017 ▴ 90
0
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0
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1.4k
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Comment: Comment: WGCNA for RNA-SEQ DATA
23 months ago by demoraesdiogo2017 ▴ 90
0
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0
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435
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high resolution deconvolution problem
cibersort deconvolution rna-seq
24 months ago by demoraesdiogo2017 ▴ 90
0
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0
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594
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Comment: Comment: whole tissue and RNA-seq: can I still study specific cell types?
24 months ago by demoraesdiogo2017 ▴ 90
0
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1
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594
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Comment: Comment: whole tissue and RNA-seq: can I still study specific cell types?
24 months ago by demoraesdiogo2017 ▴ 90
2
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4
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594
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whole tissue and RNA-seq: can I still study specific cell types?
WGCNA rnaseq
24 months ago by demoraesdiogo2017 ▴ 90
0
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0
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779
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Comment: Comment: WGCNA module network interpretation
24 months ago by demoraesdiogo2017 ▴ 90
0
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1
reply
3.5k
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Comment: Comment: How to export a network of a specific module to Cytoscape - Consensus modules /
24 months ago by demoraesdiogo2017 ▴ 90
0
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1
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3.5k
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Comment: Comment: How to export a network of a specific module to Cytoscape - Consensus modules /
24 months ago by demoraesdiogo2017 ▴ 90
2
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2
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779
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WGCNA module network interpretation
network WGCNA
24 months ago by demoraesdiogo2017 ▴ 90
5
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9
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7.1k
views
6 follow
ANOVA for RNA-seq data?
anova RNA-Seq
updated 20 months ago by 8.4k • written 3.5 years ago by ▴ 90
14
votes
8
replies
7.3k
views
8 follow
correct way of analyzing cell proportions in singlecell data
single-cell RNaseq
updated 15 months ago by • 0 • written 2.8 years ago by ▴ 90
1
vote
1
reply
585
views
gene expression x phenotype correlation
RNA-Seq
updated 2.2 years ago by ★ 6.1k • written 2.2 years ago by ▴ 90
0
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1
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524
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Comment: C: two samples with 0% alignment
2.3 years ago by demoraesdiogo2017 ▴ 90
1
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3
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524
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two samples with 0% alignment
galaxy hisat2 RNA-Seq
2.3 years ago by demoraesdiogo2017 ▴ 90
0
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1
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427
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Comment: C: anyway to save contaminated samples?
2.3 years ago by demoraesdiogo2017 ▴ 90
2
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5
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427
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anyway to save contaminated samples?
RNA-Seq
2.3 years ago by demoraesdiogo2017 ▴ 90
2
votes
2
replies
550
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blasting unaligned reads on usegalaxy
usegalaxy RNA-Seq hisat2
2.3 years ago by demoraesdiogo2017 ▴ 90
0
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0
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413
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over represented adapter in reverse but not in forward reads?
RNA-Seq
2.3 years ago by demoraesdiogo2017 ▴ 90
0
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1
reply
379
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clusters with no enrichment?
RNA-Seq
2.4 years ago by demoraesdiogo2017 ▴ 90
0
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1
reply
574
views
Seurat merge differing number of rows
seurat
updated 2.4 years ago by 20 • written 2.4 years ago by ▴ 90
0
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0
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17k
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Comment: C: How To Associate Cpg Coordinate With The Gene Names Or Entrez Id
2.6 years ago by demoraesdiogo2017 ▴ 90
0
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2
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19k
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Comment: A: Differences between FPKM and FPKM-UQ files in gene expression analysis
2.7 years ago by demoraesdiogo2017 ▴ 90
0
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0
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7.3k
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Comment: C: correct way of analyzing cell proportions in singlecell data
2.8 years ago by demoraesdiogo2017 ▴ 90
1
vote
6
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4.0k
views
subscript out of bounds in seurat expression matrix [SOLVED]
seurat
2.8 years ago by demoraesdiogo2017 ▴ 90
0
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0
replies
4.0k
views
Comment: C: subscript out of bounds in seurat expression matrix
2.8 years ago by demoraesdiogo2017 ▴ 90
0
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1
reply
4.0k
views
Comment: C: subscript out of bounds in seurat expression matrix
2.8 years ago by demoraesdiogo2017 ▴ 90
0
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1
reply
4.0k
views
Comment: C: subscript out of bounds in seurat expression matrix
2.8 years ago by demoraesdiogo2017 ▴ 90
0
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0
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1.1k
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Comment: C: Merge enrichement analysis results
2.9 years ago by demoraesdiogo2017 ▴ 90
2
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1
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2.9k
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Answer: A: Heatmap from the RNAseq raw count data
2.9 years ago by demoraesdiogo2017 ▴ 90
0
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0
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453
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comparing ScRNA-seq data from two different studies: should batch effects be corrected with pooled cells or not?
ScRNA-seq
2.9 years ago by demoraesdiogo2017 ▴ 90
0
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1
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1.1k
views
Answer: A: Merge enrichement analysis results
2.9 years ago by demoraesdiogo2017 ▴ 90
1
vote
1
reply
1.0k
views
GEO COVID-19 accession with no .mtx, .crb or .rds file?
scmRNA single cell covid-19
3.0 years ago by demoraesdiogo2017 ▴ 90
0
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0
replies
484
views
two questions about drugbank and proposing an update on a pathway
drugbank kegg pathway
updated 3.1 years ago by 39k • written 3.1 years ago by ▴ 90
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