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1
vote
2
replies
739
views
3 questions about module membership vs gene significance
WGCNA
updated 9 weeks ago by ★ 27k • written 2.8 years ago by ▴ 100
17
votes
9
replies
11k
views
9 follow
correct way of analyzing cell proportions in singlecell data
scRNA-seq single-cell
updated 3 months ago by 43k • written 3.7 years ago by ▴ 100
0
votes
0
replies
596
views
Comment: Comment: featurecounts not working on mirbase annotation file
10 months ago by demoraesdiogo2017 ▴ 100
0
votes
2
replies
596
views
featurecounts not working on mirbase annotation file
usegalaxy miRNA-seq
10 months ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
510
views
Comment: Comment: No counts in my RNA-seq data
14 months ago by demoraesdiogo2017 ▴ 100
1
vote
2
replies
510
views
No counts in my RNA-seq data
sRNA e.coli
14 months ago by demoraesdiogo2017 ▴ 100
3
votes
2
replies
578
views
carp reads in my bacterial small RNome
rna-seq
updated 14 months ago by 6.4k • written 14 months ago by ▴ 100
0
votes
0
replies
750
views
Comment: Comment: mirbase does not have miRNA annotation of my species, what are the alternatives?
15 months ago by demoraesdiogo2017 ▴ 100
3
votes
3
replies
750
views
mirbase does not have miRNA annotation of my species, what are the alternatives?
mirbase mirna-seq
15 months ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
374
views
maximum fastq file size in galaxy?
fastq rna-seq usegalaxy
15 months ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
770
views
Comment: Comment: more than one sample in the same fasta file
15 months ago by demoraesdiogo2017 ▴ 100
0
votes
1
reply
770
views
Comment: Comment: more than one sample in the same fasta file
15 months ago by demoraesdiogo2017 ▴ 100
1
vote
5
replies
770
views
more than one sample in the same fasta file
mirnaseq usegalaxy
15 months ago by demoraesdiogo2017 ▴ 100
3
votes
2
replies
909
views
Relative log expression normalization without negative values
rna-seq
updated 20 months ago by 82k • written 20 months ago by ▴ 100
2
votes
3
replies
1.6k
views
96% of reads aligned to the genome, but only 40% to the transcriptome?
rnaseq single-cell
updated 21 months ago by 82k • written 21 months ago by ▴ 100
0
votes
1
reply
717
views
Comment: Comment: 0% adapter bases after demultiplexing 10x data and "undetermined" sample
22 months ago by demoraesdiogo2017 ▴ 100
0
votes
3
replies
717
views
0% adapter bases after demultiplexing 10x data and "undetermined" sample
10x BCLconvert illumina snrnaseq
updated 22 months ago by 141k • written 22 months ago by ▴ 100
4
votes
5
replies
1.6k
views
how to tell if data was log transformed
UPLC
updated 2.2 years ago by ★ 27k • written 2.2 years ago by ▴ 100
0
votes
0
replies
1.6k
views
Comment: Comment: how to tell if data was log transformed
2.2 years ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
333
views
cytoescape enhancedgraphics image export bug
cytoescape enhancedgraphics
2.3 years ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
1.6k
views
Comment: Comment: WGCNA for RNA-SEQ DATA
2.8 years ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
634
views
high resolution deconvolution problem
cibersort deconvolution rna-seq
2.9 years ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
815
views
Comment: Comment: whole tissue and RNA-seq: can I still study specific cell types?
2.9 years ago by demoraesdiogo2017 ▴ 100
0
votes
1
reply
815
views
Comment: Comment: whole tissue and RNA-seq: can I still study specific cell types?
2.9 years ago by demoraesdiogo2017 ▴ 100
2
votes
4
replies
815
views
whole tissue and RNA-seq: can I still study specific cell types?
WGCNA rnaseq
2.9 years ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
1.1k
views
Comment: Comment: WGCNA module network interpretation
2.9 years ago by demoraesdiogo2017 ▴ 100
0
votes
1
reply
4.4k
views
Comment: Comment: How to export a network of a specific module to Cytoscape - Consensus modules /
2.9 years ago by demoraesdiogo2017 ▴ 100
0
votes
1
reply
4.4k
views
Comment: Comment: How to export a network of a specific module to Cytoscape - Consensus modules /
2.9 years ago by demoraesdiogo2017 ▴ 100
2
votes
2
replies
1.1k
views
WGCNA module network interpretation
network WGCNA
2.9 years ago by demoraesdiogo2017 ▴ 100
5
votes
9
replies
9.5k
views
6 follow
ANOVA for RNA-seq data?
anova RNA-Seq
updated 2.6 years ago by 8.7k • written 4.4 years ago by ▴ 100
1
vote
1
reply
768
views
gene expression x phenotype correlation
RNA-Seq
updated 3.1 years ago by ★ 7.0k • written 3.2 years ago by ▴ 100
0
votes
1
reply
723
views
Comment: C: two samples with 0% alignment
3.2 years ago by demoraesdiogo2017 ▴ 100
1
vote
3
replies
723
views
two samples with 0% alignment
galaxy hisat2 RNA-Seq
3.2 years ago by demoraesdiogo2017 ▴ 100
0
votes
1
reply
605
views
Comment: C: anyway to save contaminated samples?
3.2 years ago by demoraesdiogo2017 ▴ 100
2
votes
5
replies
605
views
anyway to save contaminated samples?
RNA-Seq
3.2 years ago by demoraesdiogo2017 ▴ 100
2
votes
2
replies
702
views
blasting unaligned reads on usegalaxy
usegalaxy RNA-Seq hisat2
3.2 years ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
521
views
over represented adapter in reverse but not in forward reads?
RNA-Seq
3.2 years ago by demoraesdiogo2017 ▴ 100
0
votes
1
reply
500
views
clusters with no enrichment?
RNA-Seq
3.3 years ago by demoraesdiogo2017 ▴ 100
0
votes
1
reply
808
views
Seurat merge differing number of rows
seurat
updated 3.3 years ago by 20 • written 3.3 years ago by ▴ 100
0
votes
0
replies
19k
views
Comment: C: How To Associate Cpg Coordinate With The Gene Names Or Entrez Id
3.5 years ago by demoraesdiogo2017 ▴ 100
0
votes
2
replies
21k
views
Comment: A: Differences between FPKM and FPKM-UQ files in gene expression analysis
3.6 years ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
11k
views
Comment: C: correct way of analyzing cell proportions in singlecell data
3.7 years ago by demoraesdiogo2017 ▴ 100
1
vote
6
replies
6.6k
views
subscript out of bounds in seurat expression matrix [SOLVED]
seurat
3.7 years ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
6.6k
views
Comment: C: subscript out of bounds in seurat expression matrix
3.7 years ago by demoraesdiogo2017 ▴ 100
0
votes
1
reply
6.6k
views
Comment: C: subscript out of bounds in seurat expression matrix
3.7 years ago by demoraesdiogo2017 ▴ 100
0
votes
1
reply
6.6k
views
Comment: C: subscript out of bounds in seurat expression matrix
3.7 years ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
1.8k
views
Comment: C: Merge enrichement analysis results
3.8 years ago by demoraesdiogo2017 ▴ 100
2
votes
1
reply
4.1k
views
Answer: A: Heatmap from the RNAseq raw count data
3.8 years ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
542
views
comparing ScRNA-seq data from two different studies: should batch effects be corrected with pooled cells or not?
ScRNA-seq
3.8 years ago by demoraesdiogo2017 ▴ 100
0
votes
1
reply
1.8k
views
Answer: A: Merge enrichement analysis results
3.8 years ago by demoraesdiogo2017 ▴ 100
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