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441
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Comment: Comment: featurecounts not working on mirbase annotation file
5 months ago by demoraesdiogo2017 ▴ 100
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2
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441
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featurecounts not working on mirbase annotation file
usegalaxy miRNA-seq
5 months ago by demoraesdiogo2017 ▴ 100
0
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0
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395
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Comment: Comment: No counts in my RNA-seq data
9 months ago by demoraesdiogo2017 ▴ 100
1
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2
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395
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No counts in my RNA-seq data
sRNA e.coli
9 months ago by demoraesdiogo2017 ▴ 100
3
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2
replies
447
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carp reads in my bacterial small RNome
rna-seq
updated 9 months ago by 5.7k • written 9 months ago by ▴ 100
0
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0
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607
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Comment: Comment: mirbase does not have miRNA annotation of my species, what are the alternatives?
10 months ago by demoraesdiogo2017 ▴ 100
3
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3
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607
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mirbase does not have miRNA annotation of my species, what are the alternatives?
mirbase mirna-seq
10 months ago by demoraesdiogo2017 ▴ 100
0
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0
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293
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maximum fastq file size in galaxy?
fastq rna-seq usegalaxy
10 months ago by demoraesdiogo2017 ▴ 100
0
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0
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604
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Comment: Comment: more than one sample in the same fasta file
10 months ago by demoraesdiogo2017 ▴ 100
0
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1
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604
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Comment: Comment: more than one sample in the same fasta file
10 months ago by demoraesdiogo2017 ▴ 100
1
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5
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604
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more than one sample in the same fasta file
mirnaseq usegalaxy
10 months ago by demoraesdiogo2017 ▴ 100
3
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2
replies
723
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Relative log expression normalization without negative values
rna-seq
updated 15 months ago by 78k • written 15 months ago by ▴ 100
2
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3
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1.2k
views
96% of reads aligned to the genome, but only 40% to the transcriptome?
rnaseq single-cell
updated 16 months ago by 78k • written 16 months ago by ▴ 100
0
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1
reply
590
views
Comment: Comment: 0% adapter bases after demultiplexing 10x data and "undetermined" sample
17 months ago by demoraesdiogo2017 ▴ 100
0
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3
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590
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0% adapter bases after demultiplexing 10x data and "undetermined" sample
10x BCLconvert illumina snrnaseq
updated 17 months ago by 136k • written 17 months ago by ▴ 100
4
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5
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1.2k
views
how to tell if data was log transformed
UPLC
updated 22 months ago by ★ 25k • written 22 months ago by ▴ 100
0
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0
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1.2k
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Comment: Comment: how to tell if data was log transformed
22 months ago by demoraesdiogo2017 ▴ 100
0
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0
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276
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cytoescape enhancedgraphics image export bug
cytoescape enhancedgraphics
22 months ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
439
views
3 questions about module membership vs gene significance
WGCNA
2.4 years ago by demoraesdiogo2017 ▴ 100
0
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0
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1.5k
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Comment: Comment: WGCNA for RNA-SEQ DATA
2.4 years ago by demoraesdiogo2017 ▴ 100
0
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0
replies
525
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high resolution deconvolution problem
cibersort deconvolution rna-seq
2.5 years ago by demoraesdiogo2017 ▴ 100
0
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0
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717
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Comment: Comment: whole tissue and RNA-seq: can I still study specific cell types?
2.5 years ago by demoraesdiogo2017 ▴ 100
0
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1
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717
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Comment: Comment: whole tissue and RNA-seq: can I still study specific cell types?
2.5 years ago by demoraesdiogo2017 ▴ 100
2
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4
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717
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whole tissue and RNA-seq: can I still study specific cell types?
WGCNA rnaseq
2.5 years ago by demoraesdiogo2017 ▴ 100
0
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0
replies
942
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Comment: Comment: WGCNA module network interpretation
2.5 years ago by demoraesdiogo2017 ▴ 100
0
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1
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4.0k
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Comment: Comment: How to export a network of a specific module to Cytoscape - Consensus modules /
2.5 years ago by demoraesdiogo2017 ▴ 100
0
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1
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4.0k
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Comment: Comment: How to export a network of a specific module to Cytoscape - Consensus modules /
2.5 years ago by demoraesdiogo2017 ▴ 100
2
votes
2
replies
942
views
WGCNA module network interpretation
network WGCNA
2.5 years ago by demoraesdiogo2017 ▴ 100
5
votes
9
replies
8.3k
views
6 follow
ANOVA for RNA-seq data?
anova RNA-Seq
updated 2.2 years ago by 8.4k • written 4.0 years ago by ▴ 100
14
votes
8
replies
8.9k
views
8 follow
correct way of analyzing cell proportions in singlecell data
single-cell RNaseq
updated 21 months ago by • 0 • written 3.3 years ago by ▴ 100
1
vote
1
reply
682
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gene expression x phenotype correlation
RNA-Seq
updated 2.7 years ago by ★ 6.5k • written 2.8 years ago by ▴ 100
0
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1
reply
638
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Comment: C: two samples with 0% alignment
2.8 years ago by demoraesdiogo2017 ▴ 100
1
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3
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638
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two samples with 0% alignment
galaxy hisat2 RNA-Seq
2.8 years ago by demoraesdiogo2017 ▴ 100
0
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1
reply
532
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Comment: C: anyway to save contaminated samples?
2.8 years ago by demoraesdiogo2017 ▴ 100
2
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5
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532
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anyway to save contaminated samples?
RNA-Seq
2.8 years ago by demoraesdiogo2017 ▴ 100
2
votes
2
replies
629
views
blasting unaligned reads on usegalaxy
usegalaxy RNA-Seq hisat2
2.8 years ago by demoraesdiogo2017 ▴ 100
0
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0
replies
478
views
over represented adapter in reverse but not in forward reads?
RNA-Seq
2.8 years ago by demoraesdiogo2017 ▴ 100
0
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1
reply
444
views
clusters with no enrichment?
RNA-Seq
2.9 years ago by demoraesdiogo2017 ▴ 100
0
votes
1
reply
701
views
Seurat merge differing number of rows
seurat
updated 2.9 years ago by 20 • written 2.9 years ago by ▴ 100
0
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0
replies
18k
views
Comment: C: How To Associate Cpg Coordinate With The Gene Names Or Entrez Id
3.1 years ago by demoraesdiogo2017 ▴ 100
0
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2
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20k
views
Comment: A: Differences between FPKM and FPKM-UQ files in gene expression analysis
3.2 years ago by demoraesdiogo2017 ▴ 100
0
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0
replies
8.9k
views
Comment: C: correct way of analyzing cell proportions in singlecell data
3.3 years ago by demoraesdiogo2017 ▴ 100
1
vote
6
replies
5.1k
views
subscript out of bounds in seurat expression matrix [SOLVED]
seurat
3.3 years ago by demoraesdiogo2017 ▴ 100
0
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0
replies
5.1k
views
Comment: C: subscript out of bounds in seurat expression matrix
3.3 years ago by demoraesdiogo2017 ▴ 100
0
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1
reply
5.1k
views
Comment: C: subscript out of bounds in seurat expression matrix
3.3 years ago by demoraesdiogo2017 ▴ 100
0
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1
reply
5.1k
views
Comment: C: subscript out of bounds in seurat expression matrix
3.3 years ago by demoraesdiogo2017 ▴ 100
0
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0
replies
1.5k
views
Comment: C: Merge enrichement analysis results
3.4 years ago by demoraesdiogo2017 ▴ 100
2
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1
reply
3.5k
views
Answer: A: Heatmap from the RNAseq raw count data
3.4 years ago by demoraesdiogo2017 ▴ 100
0
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0
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501
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comparing ScRNA-seq data from two different studies: should batch effects be corrected with pooled cells or not?
ScRNA-seq
3.4 years ago by demoraesdiogo2017 ▴ 100
0
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1
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1.5k
views
Answer: A: Merge enrichement analysis results
3.4 years ago by demoraesdiogo2017 ▴ 100
77 results • Page 1 of 2
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