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0
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replies
988
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Comment:
Comment: Quick way to find the nearest genes
2.7 years ago by
chipolino
▴ 150
1
vote
2
replies
988
views
Quick way to find the nearest genes
genes
bed
genome
enhancers
2.7 years ago by
chipolino
▴ 150
1
vote
2
replies
1.1k
views
Given set of genomic sequences find potentially enriched genes?
enrichment
genes
mouse
updated 3.1 years ago by
EagleEye
7.6k • written 3.1 years ago by
chipolino
▴ 150
2
votes
2
replies
2.1k
views
During RNA-seq analysis a lot of pseudogenes come up as DE
RNA-Seq
pseudogene
3.9 years ago by
chipolino
▴ 150
22
votes
2
replies
22k
views
mitochondrial/ribosomal protein genes in scRNA-seq analysis
scRNA-seq
RNA-Seq
Data processing
updated 4.4 years ago by
jared.andrews07
★ 18k • written 6.0 years ago by
chipolino
▴ 150
0
votes
0
replies
834
views
What should I provide as input for Tomtom: PPMs or PWMs?
motif
tomtom
meme
5.0 years ago by
chipolino
▴ 150
2
votes
1
reply
1.2k
views
Upstream regulators of a gene/protein
TF
Regulation
Target
updated 5.3 years ago by
piyushjo
▴ 710 • written 5.3 years ago by
chipolino
▴ 150
0
votes
1
reply
2.1k
views
Comment:
C: scATAC-seq analysis, data preprocessing
5.6 years ago by
chipolino
▴ 150
2
votes
8
replies
2.1k
views
scATAC-seq analysis, data preprocessing
scATAC-seq
updated 5.6 years ago by
GouthamAtla
12k • written 5.6 years ago by
chipolino
▴ 150
0
votes
1
reply
2.1k
views
Comment:
C: scATAC-seq analysis, data preprocessing
5.6 years ago by
chipolino
▴ 150
5
votes
1
reply
5.6k
views
UMAP interpretation in scRNA-seq analysis
scRNA-seq
UMAP
Pseudotime
updated 5.6 years ago by
Biostar
20 • written 5.6 years ago by
chipolino
▴ 150
1
vote
0
replies
3.4k
views
Comment:
C: Distance for gene expression samples
5.6 years ago by
chipolino
▴ 150
0
votes
1
reply
3.4k
views
Comment:
C: Distance for gene expression samples
5.6 years ago by
chipolino
▴ 150
5
votes
7
replies
3.4k
views
Distance for gene expression samples
RNA-Seq
distance
updated 5.6 years ago by
Kevin Blighe
88k • written 5.6 years ago by
chipolino
▴ 150
0
votes
1
reply
3.4k
views
Comment:
C: Distance for gene expression samples
5.6 years ago by
chipolino
▴ 150
0
votes
0
replies
1.4k
views
Drug target discovery with single cell RNA-seq
scRNA-seq
drug target
updated 5.8 years ago by
Biostar
20 • written 6.0 years ago by
chipolino
▴ 150
0
votes
1
reply
1.1k
views
Chip-seq data of bivalent regions in hESC
stem cells
ChIP-Seq
hESC
updated 6.1 years ago by
EagleEye
7.6k • written 6.1 years ago by
chipolino
▴ 150
0
votes
0
replies
1.6k
views
scRNA-seq, filter low expressed genes based on RPKM value
scRNA-seq
expression
filtering
rpkm
6.2 years ago by
chipolino
▴ 150
3
votes
1
reply
1.8k
views
RNA-seq for drug targets
RNA-Seq
drug target
updated 6.3 years ago by
Kevin Blighe
88k • written 6.3 years ago by
chipolino
▴ 150
5
votes
5
replies
12k
views
GSEA, input metrics
GSEA
RNA-Seq
updated 6.3 years ago by
shawn.w.foley
★ 1.3k • written 6.3 years ago by
chipolino
▴ 150
1
vote
1
reply
2.3k
views
Directionality of KEGG/Reactome/Wikipathways
KEGG
Reactome
pathways
wikipathways
updated 6.3 years ago by
h.mon
35k • written 6.3 years ago by
chipolino
▴ 150
0
votes
0
replies
1.4k
views
Transcription factor enrichment analysis
enrichment
transcription factor
fisher exact test
6.4 years ago by
chipolino
▴ 150
4
votes
3
replies
1.9k
views
Pathway enrichment analysis of gene set
pathway enrichment analysis
updated 6.5 years ago by
EagleEye
7.6k • written 6.5 years ago by
chipolino
▴ 150
2
votes
3
replies
7.2k
views
Stringtie output files
RNA-Seq
Stringtie
GTF
updated 6.5 years ago by
Kevin Blighe
88k • written 6.5 years ago by
chipolino
▴ 150
0
votes
0
replies
2.2k
views
Comment:
C: Kmer enrichment analysis
6.7 years ago by
chipolino
▴ 150
1
vote
2
replies
2.2k
views
Kmer enrichment analysis
genome
sequence
6.7 years ago by
chipolino
▴ 150
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