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Processing WES mouse data using GATK on Terra Bio
Terra GATK mm9 exome Firecloud
updated 4.4 years ago by ▴ 40 • written 4.7 years ago by ▴ 30
0
votes
0
replies
897
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Does having sample identifiers in a Seurat object semi-supervise PCA results?
seurat3 single-cell analysis pca unsupervised
4.5 years ago by Arko ▴ 30
0
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0
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1.6k
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Comment: C: Processing WES mouse data using GATK on Terra Bio
4.7 years ago by Arko ▴ 30
0
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0
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852
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Comment: C: How to obtain loading eigenvalues from CPCA?
4.8 years ago by Arko ▴ 30
1
vote
2
replies
852
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How to obtain loading eigenvalues from CPCA?
contrastive CPCA python
4.8 years ago by Arko ▴ 30
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0
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2.0k
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Comment: C: ValueError("End of file without quality information.") when using SeqIO
4.9 years ago by Arko ▴ 30
0
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1
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2.0k
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Comment: C: ValueError("End of file without quality information.") when using SeqIO
4.9 years ago by Arko ▴ 30
0
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1
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2.0k
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Comment: C: ValueError("End of file without quality information.") when using SeqIO
updated 4.9 years ago by 43k • written 4.9 years ago by ▴ 30
4
votes
8
replies
2.0k
views
ValueError("End of file without quality information.") when using SeqIO
biopython fastq FastqGeneralIterator SeqIO python
updated 4.9 years ago by 43k • written 4.9 years ago by ▴ 30
0
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1
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3.5k
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Comment: C: Querying VEP using REST API
5.5 years ago by Arko ▴ 30
0
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1
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3.5k
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Comment: C: Querying VEP using REST API
5.5 years ago by Arko ▴ 30
0
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2
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3.5k
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Comment: C: Querying VEP using REST API
5.5 years ago by Arko ▴ 30
11
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19
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3.5k
views
Querying VEP using REST API
REST VEP Ensembl python R
updated 5.5 years ago by 23k • written 5.5 years ago by ▴ 30
0
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0
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2.4k
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Comment: C: VEP JSON output parsing
5.5 years ago by Arko ▴ 30
0
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1
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3.5k
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Comment: C: Querying VEP using REST API
5.5 years ago by Arko ▴ 30
0
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1
reply
3.5k
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Comment: C: Querying VEP using REST API
5.5 years ago by Arko ▴ 30
1
vote
2
replies
1.4k
views
Querying variations from a VCF file
vcf python variants mutations
updated 11 months ago by 43k • written 5.5 years ago by ▴ 30
0
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0
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3.0k
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Comment: C: Merging and converting multiple vcf files into a SNP array
5.8 years ago by Arko ▴ 30
0
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1
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3.0k
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Comment: C: Merging and converting multiple vcf files into a SNP array
5.8 years ago by Arko ▴ 30
0
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2
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3.0k
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Comment: A: Merging and converting multiple vcf files into a SNP array
5.8 years ago by Arko ▴ 30
2
votes
8
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3.0k
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Merging and converting multiple vcf files into a SNP array
VCF Python R BCF
5.8 years ago by Arko ▴ 30
0
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1
reply
1.7k
views
Liftover dbSNP IDs
SNP snp assembly
updated 5.9 years ago by 161k • written 5.9 years ago by ▴ 30
0
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1
reply
2.3k
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Comment: C: Differential Expression of a normalized RNAseq expression dataset
6.0 years ago by Arko ▴ 30
1
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1
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2.3k
views
Comment: C: Differential Expression of a normalized RNAseq expression dataset
6.0 years ago by Arko ▴ 30
4
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5
replies
2.3k
views
Differential Expression of a normalized RNAseq expression dataset
RNA-Seq R DeSeq TCGA glioblastoma
updated 6.0 years ago by 87k • written 6.0 years ago by ▴ 30
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