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4
votes
4
replies
4.6k
views
Combined Signal Track Of Forward And Reverse Reads?
rnaseq ucsc
updated 5.0 years ago by ▴ 80 • written 12.3 years ago by ▴ 330
4
votes
2
replies
3.9k
views
Trendline Of Chipseq Read Values In Intron Regions
r chipseq intron
updated 8.5 years ago by 20 • written 12.8 years ago by ▴ 330
6
votes
7
replies
3.2k
views
Efficiently join paired-end read coordinates in the same line?
HiC paired-end 4C 3C
updated 3.7 years ago by 45k • written 11.0 years ago by ▴ 330
8
votes
18
replies
11k
views
8 follow
Mirna-Seq Trimming And Mapping?
mirna trimming adaptor mapping
updated 3.0 years ago by 45k • written 12.4 years ago by ▴ 330
7
votes
4
replies
5.7k
views
Chip-Seq Enrichment Profile Significance?
chip-seq
updated 10.4 years ago by ▴ 120 • written 12.2 years ago by ▴ 330
12
votes
8
replies
4.2k
views
Lab Web Framework, Any Suggestions?
r python
updated 4.6 years ago by 45k • written 12.7 years ago by ▴ 330
1
vote
0
replies
3.2k
views
A couple of questions related to transcriptome assembly (Using Cufflinks/Scripture)
lncRNA Scripute cufflinks RNAseq
updated 3.5 years ago by 45k • written 10.7 years ago by ▴ 330
0
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0
replies
3.2k
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Comment: C: Efficiently join paired-end read coordinates in the same line?
11.0 years ago by daniel.soronellas ▴ 330
0
votes
4
replies
4.2k
views
PRIDE Mass-Spec Published data analysis?
mass-spect
updated 4.6 years ago by 45k • written 11.1 years ago by ▴ 330
0
votes
0
replies
4.2k
views
Comment: Comment: PRIDE Mass-Spec Published data analysis?
updated 4.6 years ago by 45k • written 11.1 years ago by ▴ 330
10
votes
4
replies
3.0k
views
Where to download In-vitro RNA-seq published experiments?
RNA-Seq
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 330
0
votes
2
replies
3.0k
views
Methods to subset sequenced experiments to account for differences in read counts?
genome sequencing down-sampling
updated 4.0 years ago by 45k • written 11.4 years ago by ▴ 330
0
votes
0
replies
6.4k
views
Comment: C: Large BAM file to GRanges object and then save as RData
11.6 years ago by daniel.soronellas ▴ 330
6
votes
2
replies
6.4k
views
Large BAM file to GRanges object and then save as RData
GRanges RData R BAM
updated 4.2 years ago by 45k • written 11.6 years ago by ▴ 330
8
votes
10
replies
8.2k
views
6 follow
Which Pipeline To Analyze Dnase-Seq For Significant Regulatory-Region Finding?
updated 3.8 years ago by 45k • written 12.5 years ago by ▴ 330
0
votes
0
replies
6.0k
views
Answer: A: Computational Validation Of Chip-Seq Peaks
12.1 years ago by daniel.soronellas ▴ 330
7
votes
6
replies
6.0k
views
Computational Validation Of Chip-Seq Peaks
chip-seq
12.1 years ago by daniel.soronellas ▴ 330
0
votes
0
replies
6.0k
views
Comment: C: Computational Validation Of Chip-Seq Peaks
12.1 years ago by daniel.soronellas ▴ 330
0
votes
0
replies
6.0k
views
Comment: C: Computational Validation Of Chip-Seq Peaks
12.1 years ago by daniel.soronellas ▴ 330
0
votes
0
replies
11k
views
Comment: C: Mirna-Seq Trimming And Mapping?
12.3 years ago by daniel.soronellas ▴ 330
0
votes
0
replies
11k
views
Comment: C: Mirna-Seq Trimming And Mapping?
12.3 years ago by daniel.soronellas ▴ 330
0
votes
0
replies
11k
views
Comment: C: Mirna-Seq Trimming And Mapping?
12.3 years ago by daniel.soronellas ▴ 330
0
votes
0
replies
11k
views
Comment: C: Mirna-Seq Trimming And Mapping?
12.3 years ago by daniel.soronellas ▴ 330
0
votes
1
reply
4.9k
views
Comment: C: Having Problems Reproducing Published Results Of Classifying Promoters Into High
12.4 years ago by daniel.soronellas ▴ 330
7
votes
3
replies
4.9k
views
Having Problems Reproducing Published Results Of Classifying Promoters Into High-Cpg, Low-Cpg Classes
dna methylation ucsc promoter
updated 12.4 years ago by 103k • written 12.4 years ago by ▴ 330
2
votes
0
replies
2.3k
views
Score Over/Under Representation Of Chipseq Marks In A Set Of Regions And Combine With A Heatmap?
heatmap chipseq transcription-factor
12.4 years ago by daniel.soronellas ▴ 330
0
votes
0
replies
25k
views
Comment: C: Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum?
12.4 years ago by daniel.soronellas ▴ 330
0
votes
0
replies
12k
views
Comment: C: Macs: How Low Can One Go For Mfold Parameter; And What Does Uneven Treatment & C
12.5 years ago by daniel.soronellas ▴ 330
0
votes
1
reply
8.2k
views
Comment: C: Which Pipeline To Analyze Dnase-Seq For Significant Regulatory-Region Finding?
12.5 years ago by daniel.soronellas ▴ 330
0
votes
0
replies
5.4k
views
Comment: C: Rank Chip-Seq Peaks Based On Motif Occurrence?
12.6 years ago by daniel.soronellas ▴ 330
0
votes
0
replies
5.4k
views
Comment: C: Rank Chip-Seq Peaks Based On Motif Occurrence?
12.6 years ago by daniel.soronellas ▴ 330
4
votes
4
replies
5.4k
views
Rank Chip-Seq Peaks Based On Motif Occurrence?
chip-seq motif peak-calling
updated 12.6 years ago by ▴ 280 • written 12.6 years ago by ▴ 330
0
votes
0
replies
4.2k
views
Comment: C: Lab Web Framework, Any Suggestions?
12.7 years ago by daniel.soronellas ▴ 330
0
votes
0
replies
4.2k
views
Comment: C: Lab Web Framework, Any Suggestions?
12.7 years ago by daniel.soronellas ▴ 330
0
votes
0
replies
3.4k
views
Comment: C: Profile Coverage Of Rnaseq Samples?
12.7 years ago by daniel.soronellas ▴ 330
0
votes
1
reply
3.4k
views
Comment: C: Profile Coverage Of Rnaseq Samples?
12.7 years ago by daniel.soronellas ▴ 330
6
votes
5
replies
3.4k
views
Profile Coverage Of Rnaseq Samples?
bam tophat cufflinks bedtools rna-seq
updated 12.7 years ago by 11k • written 12.7 years ago by ▴ 330
0
votes
0
replies
3.9k
views
Comment: C: Trendline Of Chipseq Read Values In Intron Regions
12.8 years ago by daniel.soronellas ▴ 330
0
votes
0
replies
6.0k
views
Comment: C: Tophat, Cufflinks/Cuffdiff Pipeline With Normalization
12.8 years ago by daniel.soronellas ▴ 330
3
votes
1
reply
6.0k
views
Tophat, Cufflinks/Cuffdiff Pipeline With Normalization
rna-seq cufflinks cuffdiff fpkm normalization
12.9 years ago by daniel.soronellas ▴ 330
10
votes
14
replies
9.2k
views
Rnaseq Processed Data To Genes Up/Down
fpkm
updated 12.9 years ago by ★ 1.5k • written 12.9 years ago by ▴ 330
0
votes
1
reply
9.2k
views
Comment: C: Rnaseq Processed Data To Genes Up/Down
12.9 years ago by daniel.soronellas ▴ 330
0
votes
1
reply
9.2k
views
Comment: C: Rnaseq Processed Data To Genes Up/Down
12.9 years ago by daniel.soronellas ▴ 330
0
votes
1
reply
9.2k
views
Comment: C: Rnaseq Processed Data To Genes Up/Down
12.9 years ago by daniel.soronellas ▴ 330
0
votes
1
reply
9.2k
views
Comment: C: Rnaseq Processed Data To Genes Up/Down
12.9 years ago by daniel.soronellas ▴ 330
1
vote
6
replies
4.5k
views
How To Get Ucsc Locations For Mrna And Non-Coding
mrna
updated 12.9 years ago by ★ 1.5k • written 12.9 years ago by ▴ 330
0
votes
1
reply
4.5k
views
Comment: C: How To Get Ucsc Locations For Mrna And Non-Coding
12.9 years ago by daniel.soronellas ▴ 330
0
votes
1
reply
4.5k
views
Answer: A: How To Get Ucsc Locations For Mrna And Non-Coding
12.9 years ago by daniel.soronellas ▴ 330
1
vote
1
reply
1.9k
views
Fastq Extract Under-Represented Sequences
fastqc
updated 12.9 years ago by 13k • written 12.9 years ago by ▴ 330
28
votes
15
replies
15k
views
8 follow
How To Make Intervals In A Range Of Numbers?
perl python awk chip-seq
updated 13.0 years ago by 12k • written 13.0 years ago by ▴ 330
53 results • Page 1 of 2
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