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3
votes
2
replies
6.7k
views
What Is The Meaning Of The Score In Diffbind'S Occupancy/Overlap Analysis?
chipseq macs
updated 16 months ago by • 0 • written 11.3 years ago by ▴ 290
2
votes
4
replies
4.5k
views
Trimming Of Illumina Rna-Seq Pe Based On Mean/Median Phred Or Richard Mott'S Algorithm
rna-seq trimming
updated 3.6 years ago by ▴ 60 • written 12.0 years ago by ▴ 290
2
votes
6
replies
5.3k
views
Weird Tophat2 Error Message
tophat2
updated 4.2 years ago by 20 • written 11.8 years ago by ▴ 290
1
vote
1
reply
2.3k
views
Downloading the raw 16S amplicon data for all saliva samples from the Human Microbiome Project
microbiome hmp 16s
updated 4.4 years ago by 20 • written 9.2 years ago by ▴ 290
0
votes
3
replies
17k
views
Comment: C: Easiest way to compute RNA-Seq mapping stats (exons, introns, intergenic)?
updated 5.6 years ago by 45k • written 10.2 years ago by ▴ 290
0
votes
1
reply
17k
views
Comment: C: Easiest way to compute RNA-Seq mapping stats (exons, introns, intergenic)?
updated 5.6 years ago by 45k • written 10.2 years ago by ▴ 290
14
votes
24
replies
17k
views
10 follow
Easiest way to compute RNA-Seq mapping stats (exons, introns, intergenic)?
RNA-Seq
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 290
0
votes
1
reply
5.3k
views
Answer: A: Replicates In Chip-Seq
updated 6.3 years ago by 45k • written 11.7 years ago by ▴ 290
0
votes
0
replies
2.0k
views
Best Practice For Denovo Assembly of Bacterial Plasmids
plasmid bacteria denovo
7.9 years ago by Nick ▴ 290
3
votes
1
reply
2.5k
views
Using qiime (or mothur) with 16S V1-V3 data
qiime mothur 16s
updated 7.9 years ago by 102k • written 7.9 years ago by ▴ 290
8
votes
4
replies
7.2k
views
Chips-Seq Replicates And Motif Discovery: What Is The Most Sound Way To Deal With The Merged Peaks (Peak Consensus) ?
chip-seq motif replicates
updated 8.4 years ago by 20 • written 11.5 years ago by ▴ 290
6
votes
12
replies
9.5k
views
7 follow
Problem When Downloading Large Number Of Sequences From Genbank
genbank
updated 2.2 years ago by 45k • written 13.0 years ago by ▴ 290
0
votes
1
reply
4.9k
views
Macs: Valueerror: Invalid Literal For Int() With Base 10: '1:N:0:'
chip-seq
updated 8.8 years ago by ▴ 110 • written 11.9 years ago by ▴ 290
0
votes
1
reply
12k
views
Comment: C: How To Annotate A Newly Sequenced Genome
8.9 years ago by Nick ▴ 290
2
votes
6
replies
3.5k
views
A pipeline for comparative bacterial genomics involving cohorts (i.e. between group comparisons)?
snp next-gen alignment
updated 2.8 years ago by 45k • written 9.3 years ago by ▴ 290
0
votes
1
reply
3.5k
views
Comment: C: A pipeline for comparative bacterial genomics? Is it similar to comparative canc
9.3 years ago by Nick ▴ 290
0
votes
1
reply
3.5k
views
Comment: C: A pipeline for comparative bacterial genomics? Is it similar to comparative canc
9.3 years ago by Nick ▴ 290
0
votes
0
replies
4.9k
views
Comment: C: What's wrong with this sample? (kmers found by FastQC of RNA-Seq)
9.3 years ago by Nick ▴ 290
4
votes
3
replies
4.9k
views
What's wrong with this sample? (kmers found by FastQC of RNA-Seq)
RNA-Seq
updated 2.8 years ago by 45k • written 9.3 years ago by ▴ 290
8
votes
2
replies
3.0k
views
Are these samples de-multiplexed?
illumina de-multiplexing miseq
updated 2.8 years ago by 45k • written 9.4 years ago by ▴ 290
0
votes
0
replies
6.4k
views
Comment: C: Coverage Of Rnaseq: Exonic, Intronic And Intergenic
10.2 years ago by Nick ▴ 290
0
votes
2
replies
17k
views
Comment: Comment: Easiest way to compute RNA-Seq mapping stats (exons, introns, intergenic)?
updated 3.1 years ago by 45k • written 10.2 years ago by ▴ 290
0
votes
0
replies
17k
views
Comment: Comment: Easiest way to compute RNA-Seq mapping stats (exons, introns, intergenic)?
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 290
0
votes
1
reply
17k
views
Comment: C: Easiest way to compute RNA-Seq mapping stats (exons, introns, intergenic)?
10.2 years ago by Nick ▴ 290
0
votes
0
replies
17k
views
Comment: Comment: Easiest way to compute RNA-Seq mapping stats (exons, introns, intergenic)?
updated 3.1 years ago by 45k • written 10.2 years ago by ▴ 290
0
votes
1
reply
17k
views
Comment: Comment: Easiest way to compute RNA-Seq mapping stats (exons, introns, intergenic)?
updated 3.1 years ago by 45k • written 10.2 years ago by ▴ 290
0
votes
1
reply
17k
views
Comment: Comment: Easiest way to compute RNA-Seq mapping stats (exons, introns, intergenic)?
updated 3.1 years ago by 45k • written 10.2 years ago by ▴ 290
2
votes
1
reply
3.0k
views
Pipeline for analysing multiple tumor/normal exome samples
tumor exome
updated 3.6 years ago by 45k • written 11.0 years ago by ▴ 290
1
vote
1
reply
3.2k
views
Computing Normalized Counts For Exons In Edger
edger rna-seq
updated 11.1 years ago by 105k • written 11.1 years ago by ▴ 290
7
votes
5
replies
12k
views
The Easiest/Fastest Way To Get From Bam To Tpm Or Rpkm
rna-seq bam rpkm tophat2 bowtie2
updated 11.2 years ago by ▴ 770 • written 11.6 years ago by ▴ 290
0
votes
2
replies
3.0k
views
Large Number Of Macs Negative Peaks
chip-seq macs
updated 11.3 years ago by ▴ 400 • written 11.4 years ago by ▴ 290
2
votes
0
replies
6.7k
views
Answer: A: What Is The Meaning Of The Score In Diffbind'S Occupancy/Overlap Analysis?
11.3 years ago by Nick ▴ 290
2
votes
0
replies
2.6k
views
Chip-Seq Tags Of Unequal Length - Is This A Problem For Macs?
chip-seq macs trimming
11.3 years ago by Nick ▴ 290
0
votes
1
reply
4.1k
views
Double Peaks For Both Forward And Reverse Tags In Macs2 Model Of Chip-Seq Data - Shall I Be Concerned?
chip-seq
11.3 years ago by Nick ▴ 290
0
votes
0
replies
7.2k
views
Comment: C: Chips-Seq Replicates And Motif Discovery: What Is The Most Sound Way To Deal Wit
11.5 years ago by Nick ▴ 290
0
votes
0
replies
3.3k
views
Comment: C: Macs Raises Error: No Such File Or Directory
11.5 years ago by Nick ▴ 290
1
vote
2
replies
3.3k
views
Macs Raises Error: No Such File Or Directory
macs paired-end
updated 11.5 years ago by 102k • written 11.5 years ago by ▴ 290
0
votes
0
replies
3.6k
views
Comment: C: Combination Of Paired-End And Single-End Samples In Chip-Seq Tf Study
11.5 years ago by Nick ▴ 290
1
vote
2
replies
3.6k
views
Combination Of Paired-End And Single-End Samples In Chip-Seq Tf Study
chip-seq paired-end macs
11.5 years ago by Nick ▴ 290
1
vote
2
replies
3.2k
views
Why Does The Order Of -S And -M Parameters In Bowtie Matter?
bowtie
updated 11.5 years ago by 102k • written 11.5 years ago by ▴ 290
1
vote
1
reply
3.2k
views
Answer: A: Why Does The Order Of -S And -M Parameters In Bowtie Matter?
11.5 years ago by Nick ▴ 290
0
votes
0
replies
2.4k
views
Comment: C: The Easiest Way To Produce The Normalised Counts In Edger
11.5 years ago by Nick ▴ 290
1
vote
3
replies
2.4k
views
The Easiest Way To Produce The Normalised Counts In Edger
edger
updated 11.5 years ago by 27k • written 11.5 years ago by ▴ 290
1
vote
1
reply
1.8k
views
Answer: A: We Need Advice On Choosing The Appropriate Parameters For Smallrna Sequencing
11.5 years ago by Nick ▴ 290
0
votes
0
replies
3.5k
views
Answer: A: Doubts Regarding Calculation Of Fpkm Values By Cuffdiff?
11.5 years ago by Nick ▴ 290
0
votes
0
replies
3.5k
views
Answer: A: Doubts Regarding Calculation Of Fpkm Values By Cuffdiff?
11.5 years ago by Nick ▴ 290
10
votes
6
replies
5.7k
views
Differential Expression Using Different Libraries (Truseq, Nextera)?
rna-seq
updated 11.5 years ago by ★ 2.2k • written 11.5 years ago by ▴ 290
0
votes
1
reply
5.7k
views
Comment: C: Differential Expression Using Different Libraries (Truseq, Nextera)?
11.5 years ago by Nick ▴ 290
0
votes
1
reply
4.5k
views
Comment: C: Strangely Low Proportion Of Mapped Mirna Reads
11.5 years ago by Nick ▴ 290
1
vote
0
replies
4.5k
views
Comment: C: Strangely Low Proportion Of Mapped Mirna Reads
11.5 years ago by Nick ▴ 290
80 results • Page 1 of 2
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