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Comment: Comment: Short reads to identify stuctural variants
7 months ago by priya.bmg ▴ 70
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Comment: Comment: Short reads to identify stuctural variants
7 months ago by priya.bmg ▴ 70
1
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3
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1.0k
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Visualise duplications and inversions
inversions duplications
updated 7 months ago by ★ 4.4k • written 7 months ago by ▴ 70
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1
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1.4k
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Comment: Comment: Short reads to identify stuctural variants
7 months ago by priya.bmg ▴ 70
1
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6
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1.4k
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Short reads to identify stuctural variants
SV long-read short-read
7 months ago by priya.bmg ▴ 70
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0
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3.9k
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Comment: Comment: pbmm2 alignment of long reads
16 months ago by priya.bmg ▴ 70
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1
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3.9k
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Comment: Comment: pbmm2 alignment of long reads
17 months ago by priya.bmg ▴ 70
4
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9
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3.9k
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pbmm2 alignment of long reads
Long-reads pbmm2 alignment
16 months ago by priya.bmg ▴ 70
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1
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3.9k
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Comment: Comment: pbmm2 alignment of long reads
17 months ago by priya.bmg ▴ 70
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0
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3.9k
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Comment: Comment: pbmm2 alignment of long reads
17 months ago by priya.bmg ▴ 70
0
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2
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775
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Regions not clear in VCF
whole-exome variant-calling
updated 19 months ago by 45k • written 19 months ago by ▴ 70
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0
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1.5k
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Comment: Comment: Confirming called variants
2.1 years ago by priya.bmg ▴ 70
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1
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1.5k
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Comment: Comment: Confirming called variants
2.1 years ago by priya.bmg ▴ 70
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5
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1.5k
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Confirming called variants
GATK gnomAD
updated 2.1 years ago by ★ 2.5k • written 2.1 years ago by ▴ 70
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0
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637
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Visualize tfrecords file from Deepvariant
gzipped flow tensor Deepvariant records
2.5 years ago by priya.bmg ▴ 70
0
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1
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29k
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Comment: Comment: intersect VCF files
2.8 years ago by priya.bmg ▴ 70
0
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1
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29k
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Comment: Comment: intersect VCF files
2.8 years ago by priya.bmg ▴ 70
0
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1
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29k
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Comment: Comment: intersect VCF files
2.8 years ago by priya.bmg ▴ 70
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0
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1.0k
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Comment: Comment: Sequencing old DNA samples
3.0 years ago by priya.bmg ▴ 70
2
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2
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1.0k
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Sequencing old DNA samples
Sequencing
3.0 years ago by priya.bmg ▴ 70
0
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1
reply
992
views
Pandas Data Frame
vcf GATK-SV pandas annotation
updated 3.1 years ago by ▴ 410 • written 3.1 years ago by ▴ 70
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1
reply
1.4k
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Comment: Comment: Coexpression analysis
3.1 years ago by priya.bmg ▴ 70
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1
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1.4k
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Comment: Comment: Coexpression analysis
3.1 years ago by priya.bmg ▴ 70
1
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5
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1.4k
views
Coexpression analysis
CEMitool R
updated 2.4 years ago by 45k • written 3.1 years ago by ▴ 70
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0
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4.1k
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Comment: Comment: WGCNA, module trait relationship
3.1 years ago by priya.bmg ▴ 70
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0
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1.3k
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Comment: Comment: Loading Traitdata file for WGCNA analysis
3.1 years ago by priya.bmg ▴ 70
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1
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1.3k
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Comment: Comment: Loading Traitdata file for WGCNA analysis
3.1 years ago by priya.bmg ▴ 70
1
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4
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1.3k
views
Loading Traitdata file for WGCNA analysis
R WGCNA
updated 2.7 years ago by 45k • written 3.1 years ago by ▴ 70
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0
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551
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Gene prioritization
MAGMA gene-prioritization
updated 2.4 years ago by 45k • written 3.1 years ago by ▴ 70
2
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4
replies
4.0k
views
PacBio Raw Data File Formats
PacBio
updated 2.7 years ago by 45k • written 3.3 years ago by ▴ 70
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0
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3.1k
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Comment: Comment: Lockfile command not found
3.3 years ago by priya.bmg ▴ 70
0
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1
reply
1.5k
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Pacbio workflow
structural pbsv variants
updated 3.3 years ago by ▴ 50 • written 3.9 years ago by ▴ 70
0
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2
replies
1.2k
views
Bacterial contamination in human DNA sample
Long-read-sequencing Bacterial-contamination
updated 19 months ago by 45k • written 3.4 years ago by ▴ 70
0
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0
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759
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Methylation calling -Primrose Package
Methylation CIGAR PacBio
3.4 years ago by priya.bmg ▴ 70
0
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0
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1.3k
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Comment: Comment: Hard filtering variants
3.7 years ago by priya.bmg ▴ 70
1
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2
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1.3k
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Hard filtering variants
whole exome data
3.7 years ago by priya.bmg ▴ 70
0
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1
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3.1k
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Comment: Comment: Lockfile command not found
3.8 years ago by priya.bmg ▴ 70
1
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1
reply
3.1k
views
Comment: Comment: Lockfile command not found
3.8 years ago by priya.bmg ▴ 70
3
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8
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3.1k
views
Lockfile command not found
Oslo Lockfile conda concurrency
3.3 years ago by priya.bmg ▴ 70
0
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0
replies
850
views
Snakemake workflow-PacBio
Snakemake PacBio
3.8 years ago by priya.bmg ▴ 70
0
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0
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54k
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Comment: Comment: Filtering Vcf File
3.9 years ago by priya.bmg ▴ 70
0
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1
reply
1.5k
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Filtering of rare variants
filtering Rare variants
updated 3.9 years ago by 166k • written 3.9 years ago by ▴ 70
1
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2
replies
1.7k
views
Shared variants
filtering variants GATK
updated 4.0 years ago by ▴ 480 • written 4.0 years ago by ▴ 70
0
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1
reply
915
views
Post filtering analysis for exome data
shared rare Hard-filtering variants
updated 4.0 years ago by 166k • written 4.0 years ago by ▴ 70
0
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0
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762
views
False negatives -Hard filtering
calling Variant GATK Exome Concordance
4.0 years ago by priya.bmg ▴ 70
0
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1
reply
919
views
Individual or joint variant call ing
exome Filtering analysis variants
updated 4.0 years ago by ▴ 840 • written 4.0 years ago by ▴ 70
0
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1
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888
views
Preprocessing exome sequence
Analysis workflow-Germline GATK Variant
updated 4.2 years ago by 90k • written 4.2 years ago by ▴ 70
0
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0
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996
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Error in merged bam files
picard GATK NGS
4.2 years ago by priya.bmg ▴ 70
0
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1
reply
1.1k
views
Mark duplicates the bam files sorted by coordinates
Spark duplicates Mark
updated 4.2 years ago by 4.2k • written 4.2 years ago by ▴ 70
0
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0
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3.5k
views
Comment: Comment: Exec format error in unmapped bam file
4.2 years ago by priya.bmg ▴ 70
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