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0
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218
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Specify the order of the sets in VennDiagram R?
VennDiagram R
3 months ago by Lucy ▴ 110
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2
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449
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Move Cytoscape "CytoscapeConfiguration" directory
cytoscape
3 months ago by Lucy ▴ 110
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0
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449
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Comment: Comment: Move Cytoscape "CytoscapeConfiguration" directory
3 months ago by Lucy ▴ 110
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0
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1.4k
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Comment: Comment: Gini coefficient TCR repertoire
4 months ago by Lucy ▴ 110
0
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0
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347
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Comment: Comment: How does --primary work with -M and --fractional options featureCounts?
15 months ago by Lucy ▴ 110
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2
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347
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How does --primary work with -M and --fractional options featureCounts?
RNA-seq subread mapping featureCounts STAR
15 months ago by Lucy ▴ 110
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3
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1.3k
views
Comment: Comment: featureCounts parameters
15 months ago by Lucy ▴ 110
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0
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1.3k
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Comment: Comment: featureCounts parameters
15 months ago by Lucy ▴ 110
1
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7
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1.3k
views
featureCounts parameters
RNA-seq featureCounts RNA-Seq
updated 14 months ago by 72k • written 15 months ago by ▴ 110
6
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2
replies
1.5k
views
Seurat sctransform - does anyone know of a good explanation for biologists?
Seurat scRNA-seq normalization
updated 19 months ago by ▴ 50 • written 19 months ago by ▴ 110
0
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0
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563
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Why do we log transform and scale data prior to PCA for scRNA-seq analysis
Seurat log transformation scaling scRNA-seq
updated 19 months ago by 98k • written 19 months ago by ▴ 110
0
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0
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313
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Goodness-of-fit test - observed vs. expected (some expected values < 5)
R stats goodness-of-fit
20 months ago by Lucy ▴ 110
5
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9
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3.7k
views
Which counts to use for RNA-seq heatmap and PCA?
RNA-seq heatmap EdgeR PCA
updated 21 months ago by 72k • written 3.5 years ago by ▴ 110
0
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1
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3.7k
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Comment: Comment: Which counts to use for RNA-seq heatmap and PCA?
21 months ago by Lucy ▴ 110
0
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1
reply
3.7k
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Comment: Comment: Which counts to use for RNA-seq heatmap and PCA?
21 months ago by Lucy ▴ 110
0
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1
reply
4.8k
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Comment: Comment: GATK Input files reference and features have incompatible contigs: No overlappin
22 months ago by Lucy ▴ 110
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0
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597
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Comment: Comment: Rename "SM" tag in read group only
22 months ago by Lucy ▴ 110
0
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0
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340
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Add SM group STAR
samtools variant RNA-seq calling GATK STAR
22 months ago by Lucy ▴ 110
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0
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2.2k
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Comment: Comment: Error with Seurat subset function
23 months ago by Lucy ▴ 110
1
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3
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2.2k
views
Error with Seurat subset function
Seurat scRNA-seq RNA-seq
23 months ago by Lucy ▴ 110
1
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4
replies
1.4k
views
Gini coefficient TCR repertoire
TCR-sequencing Gini
4 months ago by Lucy ▴ 110
0
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1
reply
1.4k
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Comment: Comment: Gini coefficient TCR repertoire
2.1 years ago by Lucy ▴ 110
0
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1
reply
1.2k
views
Comment: Comment: Identification of modules of genes that vary over pseudotime (scRNA-seq pseudoti
2.1 years ago by Lucy ▴ 110
4
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3
replies
1.2k
views
Identification of modules of genes that vary over pseudotime (scRNA-seq pseudotime analysis)
modules scRNA-seq singlecell pseudotime RNA-seq
updated 2.1 years ago by ★ 14k • written 2.1 years ago by ▴ 110
0
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0
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751
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Comment: A: Negbinom vs. logistic regression for Seurat FindMarkers()
2.5 years ago by Lucy ▴ 110
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1
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751
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Negbinom vs. logistic regression for Seurat FindMarkers()
scRNA-seq RNA-seq Seurat
2.5 years ago by Lucy ▴ 110
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1
reply
3.4k
views
Comment: C: Differential expression analysis in Seurat
2.5 years ago by Lucy ▴ 110
2
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3
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3.4k
views
Differential expression analysis in Seurat
RNA-Seq scRNA-seq Seurat
updated 2.5 years ago by 12k • written 2.5 years ago by ▴ 110
0
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0
replies
1.3k
views
Comment: C: Correlation plot sized by another variable
2.9 years ago by Lucy ▴ 110
3
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11
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1.3k
views
Correlation plot sized by another variable
ggplot2 correlation plot corrplot
updated 2.9 years ago by 3.7k • written 2.9 years ago by ▴ 110
0
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1
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1.3k
views
Comment: C: Correlation plot sized by another variable
2.9 years ago by Lucy ▴ 110
0
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0
replies
1.3k
views
Comment: C: Correlation plot sized by another variable
2.9 years ago by Lucy ▴ 110
0
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1
reply
1.3k
views
Comment: C: Correlation plot sized by another variable
2.9 years ago by Lucy ▴ 110
0
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1
reply
1.3k
views
Comment: A: Correlation plot sized by another variable
2.9 years ago by Lucy ▴ 110
0
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0
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5.9k
views
Comment: C: findGenomeMotif.pl in Homer couldn't work properly
3.5 years ago by Lucy ▴ 110
0
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1
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3.8k
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Comment: C: problem with HOMER findMotifsGenome.pl
3.5 years ago by Lucy ▴ 110
0
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0
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3.7k
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Comment: C: Which counts to use for RNA-seq heatmap and PCA?
3.5 years ago by Lucy ▴ 110
0
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2
replies
3.7k
views
Comment: A: Which counts to use for RNA-seq heatmap and PCA?
3.5 years ago by Lucy ▴ 110
0
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0
replies
13k
views
Comment: C: biplot scaling options (ggbiplot)
3.5 years ago by Lucy ▴ 110
0
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4
replies
13k
views
biplot scaling options (ggbiplot)
biplot PCA ggbiplot
3.5 years ago by Lucy ▴ 110
0
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1
reply
13k
views
Comment: A: biplot scaling options (ggbiplot)
3.5 years ago by Lucy ▴ 110
0
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1
reply
951
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Comment: C: DEsingle differential-expression analysis
3.5 years ago by Lucy ▴ 110
3
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4
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951
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DEsingle differential-expression analysis
differential-expression analysis scRNA-seq
3.5 years ago by Lucy ▴ 110
0
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1
reply
2.9k
views
Comment: C: Seurat sctransform return.only.var.genes = FALSE
3.6 years ago by Lucy ▴ 110
4
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5
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2.9k
views
Seurat sctransform return.only.var.genes = FALSE
scRNA-seq Seurat sctransform
updated 3.6 years ago by ★ 14k • written 3.6 years ago by ▴ 110
1
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0
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2.9k
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Comment: C: Seurat sctransform return.only.var.genes = FALSE
3.6 years ago by Lucy ▴ 110
1
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0
replies
4.6k
views
Comment: C: RNA velocity on 5' 10x data?
3.6 years ago by Lucy ▴ 110
0
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0
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4.6k
views
Comment: C: RNA velocity on 5' 10x data?
3.6 years ago by Lucy ▴ 110
5
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6
replies
4.6k
views
RNA velocity on 5' 10x data?
RNA-Seq scRNA-seq RNA velocity
updated 18 months ago by ▴ 10 • written 3.6 years ago by ▴ 110
0
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0
replies
2.0k
views
Comment: C: Differential-expression analysis using logistic regression in Seurat - glm.fit w
3.6 years ago by Lucy ▴ 110
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