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Shared pathways up in disease blood and tissue relative to healthy blood (scRNA-seq)
scRNA-seq
updated 3 months ago by 84k • written 3 months ago by ▴ 140
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0
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515
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Specify the order of the sets in VennDiagram R?
VennDiagram R
17 months ago by Lucy ▴ 140
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votes
2
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741
views
Move Cytoscape "CytoscapeConfiguration" directory
cytoscape
17 months ago by Lucy ▴ 140
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0
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741
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Comment: Comment: Move Cytoscape "CytoscapeConfiguration" directory
17 months ago by Lucy ▴ 140
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0
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2.0k
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Comment: Comment: Gini coefficient TCR repertoire
18 months ago by Lucy ▴ 140
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0
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595
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Comment: Comment: How does --primary work with -M and --fractional options featureCounts?
2.4 years ago by Lucy ▴ 140
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2
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595
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How does --primary work with -M and --fractional options featureCounts?
RNA-seq subread mapping featureCounts STAR
2.4 years ago by Lucy ▴ 140
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3
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2.2k
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Comment: Comment: featureCounts parameters
2.4 years ago by Lucy ▴ 140
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0
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2.2k
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Comment: Comment: featureCounts parameters
2.4 years ago by Lucy ▴ 140
1
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7
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2.2k
views
featureCounts parameters
RNA-seq featureCounts RNA-Seq
updated 2.3 years ago by 84k • written 2.4 years ago by ▴ 140
6
votes
2
replies
2.9k
views
Seurat sctransform - does anyone know of a good explanation for biologists?
Seurat scRNA-seq normalization
updated 2.7 years ago by ▴ 50 • written 2.7 years ago by ▴ 140
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0
replies
899
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Why do we log transform and scale data prior to PCA for scRNA-seq analysis
Seurat log transformation scaling scRNA-seq
updated 2.8 years ago by 101k • written 2.8 years ago by ▴ 140
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0
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476
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Goodness-of-fit test - observed vs. expected (some expected values < 5)
R stats goodness-of-fit
2.8 years ago by Lucy ▴ 140
5
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9
replies
4.9k
views
Which counts to use for RNA-seq heatmap and PCA?
RNA-seq heatmap EdgeR PCA
updated 2.9 years ago by 84k • written 4.6 years ago by ▴ 140
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1
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4.9k
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Comment: Comment: Which counts to use for RNA-seq heatmap and PCA?
2.9 years ago by Lucy ▴ 140
0
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1
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4.9k
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Comment: Comment: Which counts to use for RNA-seq heatmap and PCA?
2.9 years ago by Lucy ▴ 140
1
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1
reply
7.5k
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Comment: Comment: GATK Input files reference and features have incompatible contigs: No overlappin
3.0 years ago by Lucy ▴ 140
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0
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767
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Comment: Comment: Rename "SM" tag in read group only
3.0 years ago by Lucy ▴ 140
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0
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496
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Add SM group STAR
samtools variant RNA-seq calling GATK STAR
3.0 years ago by Lucy ▴ 140
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0
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3.2k
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Comment: Comment: Error with Seurat subset function
3.0 years ago by Lucy ▴ 140
1
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3
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3.2k
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Error with Seurat subset function
Seurat scRNA-seq RNA-seq
3.0 years ago by Lucy ▴ 140
1
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4
replies
2.0k
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Gini coefficient TCR repertoire
TCR-sequencing Gini
18 months ago by Lucy ▴ 140
0
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1
reply
2.0k
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Comment: Comment: Gini coefficient TCR repertoire
3.2 years ago by Lucy ▴ 140
0
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1
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1.7k
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Comment: Comment: Identification of modules of genes that vary over pseudotime (scRNA-seq pseudoti
3.3 years ago by Lucy ▴ 140
4
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3
replies
1.7k
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Identification of modules of genes that vary over pseudotime (scRNA-seq pseudotime analysis)
modules scRNA-seq singlecell pseudotime RNA-seq
updated 3.3 years ago by ★ 17k • written 3.3 years ago by ▴ 140
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0
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1.1k
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Comment: A: Negbinom vs. logistic regression for Seurat FindMarkers()
3.6 years ago by Lucy ▴ 140
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1
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1.1k
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Negbinom vs. logistic regression for Seurat FindMarkers()
scRNA-seq RNA-seq Seurat
3.6 years ago by Lucy ▴ 140
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1
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4.1k
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Comment: C: Differential expression analysis in Seurat
3.6 years ago by Lucy ▴ 140
2
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3
replies
4.1k
views
Differential expression analysis in Seurat
RNA-Seq scRNA-seq Seurat
updated 3.6 years ago by 13k • written 3.6 years ago by ▴ 140
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0
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1.8k
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Comment: C: Correlation plot sized by another variable
4.0 years ago by Lucy ▴ 140
3
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11
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1.8k
views
Correlation plot sized by another variable
ggplot2 correlation plot corrplot
updated 4.0 years ago by 4.8k • written 4.0 years ago by ▴ 140
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1
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1.8k
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Comment: C: Correlation plot sized by another variable
4.0 years ago by Lucy ▴ 140
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0
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1.8k
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Comment: C: Correlation plot sized by another variable
4.0 years ago by Lucy ▴ 140
0
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1
reply
1.8k
views
Comment: C: Correlation plot sized by another variable
4.0 years ago by Lucy ▴ 140
0
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1
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1.8k
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Comment: A: Correlation plot sized by another variable
4.0 years ago by Lucy ▴ 140
0
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0
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7.5k
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Comment: C: findGenomeMotif.pl in Homer couldn't work properly
4.6 years ago by Lucy ▴ 140
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1
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5.4k
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Comment: C: problem with HOMER findMotifsGenome.pl
4.6 years ago by Lucy ▴ 140
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0
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4.9k
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Comment: C: Which counts to use for RNA-seq heatmap and PCA?
4.6 years ago by Lucy ▴ 140
0
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2
replies
4.9k
views
Comment: A: Which counts to use for RNA-seq heatmap and PCA?
4.6 years ago by Lucy ▴ 140
0
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0
replies
14k
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Comment: C: biplot scaling options (ggbiplot)
4.7 years ago by Lucy ▴ 140
0
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4
replies
14k
views
biplot scaling options (ggbiplot)
biplot PCA ggbiplot
4.7 years ago by Lucy ▴ 140
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1
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14k
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Comment: A: biplot scaling options (ggbiplot)
4.7 years ago by Lucy ▴ 140
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1
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1.2k
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Comment: C: DEsingle differential-expression analysis
4.7 years ago by Lucy ▴ 140
3
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4
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1.2k
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DEsingle differential-expression analysis
differential-expression analysis scRNA-seq
4.7 years ago by Lucy ▴ 140
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1
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3.7k
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Comment: C: Seurat sctransform return.only.var.genes = FALSE
4.7 years ago by Lucy ▴ 140
4
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5
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3.7k
views
Seurat sctransform return.only.var.genes = FALSE
scRNA-seq Seurat sctransform
updated 4.7 years ago by ★ 17k • written 4.7 years ago by ▴ 140
1
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0
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3.7k
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Comment: C: Seurat sctransform return.only.var.genes = FALSE
4.7 years ago by Lucy ▴ 140
1
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0
replies
5.5k
views
Comment: C: RNA velocity on 5' 10x data?
4.7 years ago by Lucy ▴ 140
0
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0
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5.5k
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Comment: C: RNA velocity on 5' 10x data?
4.7 years ago by Lucy ▴ 140
5
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6
replies
5.5k
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RNA velocity on 5' 10x data?
RNA-Seq scRNA-seq RNA velocity
updated 2.7 years ago by ▴ 10 • written 4.7 years ago by ▴ 140
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