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Shared pathways up in disease blood and tissue relative to healthy blood (scRNA-seq)
scRNA-seq
updated 17 months ago by 89k • written 17 months ago by ▴ 170
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0
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796
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Specify the order of the sets in VennDiagram R?
VennDiagram R
2.6 years ago by Lucy ▴ 170
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2
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1.2k
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Move Cytoscape "CytoscapeConfiguration" directory
cytoscape
2.6 years ago by Lucy ▴ 170
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0
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1.2k
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Comment: Comment: Move Cytoscape "CytoscapeConfiguration" directory
2.6 years ago by Lucy ▴ 170
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0
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2.8k
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Comment: Comment: Gini coefficient TCR repertoire
2.6 years ago by Lucy ▴ 170
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0
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1.0k
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Comment: Comment: How does --primary work with -M and --fractional options featureCounts?
3.5 years ago by Lucy ▴ 170
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2
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1.0k
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How does --primary work with -M and --fractional options featureCounts?
RNA-seq subread mapping featureCounts STAR
3.5 years ago by Lucy ▴ 170
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3
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3.2k
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Comment: Comment: featureCounts parameters
3.6 years ago by Lucy ▴ 170
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0
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3.2k
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Comment: Comment: featureCounts parameters
3.6 years ago by Lucy ▴ 170
1
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7
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3.2k
views
featureCounts parameters
RNA-seq featureCounts RNA-Seq
updated 3.4 years ago by 89k • written 3.6 years ago by ▴ 170
6
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2
replies
4.8k
views
Seurat sctransform - does anyone know of a good explanation for biologists?
Seurat scRNA-seq normalization
updated 3.9 years ago by ▴ 50 • written 3.9 years ago by ▴ 170
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0
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1.2k
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Why do we log transform and scale data prior to PCA for scRNA-seq analysis
Seurat log transformation scaling scRNA-seq
updated 3.9 years ago by 103k • written 3.9 years ago by ▴ 170
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0
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682
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Goodness-of-fit test - observed vs. expected (some expected values < 5)
R stats goodness-of-fit
3.9 years ago by Lucy ▴ 170
5
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9
replies
6.6k
views
Which counts to use for RNA-seq heatmap and PCA?
RNA-seq heatmap EdgeR PCA
updated 4.1 years ago by 89k • written 5.8 years ago by ▴ 170
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1
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6.6k
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Comment: Comment: Which counts to use for RNA-seq heatmap and PCA?
4.1 years ago by Lucy ▴ 170
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1
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6.6k
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Comment: Comment: Which counts to use for RNA-seq heatmap and PCA?
4.1 years ago by Lucy ▴ 170
1
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1
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9.9k
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Comment: Comment: GATK Input files reference and features have incompatible contigs: No overlappin
4.1 years ago by Lucy ▴ 170
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0
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1.0k
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Comment: Comment: Rename "SM" tag in read group only
4.1 years ago by Lucy ▴ 170
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0
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784
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Add SM group STAR
samtools variant RNA-seq calling GATK STAR
4.1 years ago by Lucy ▴ 170
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0
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4.4k
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Comment: Comment: Error with Seurat subset function
4.2 years ago by Lucy ▴ 170
1
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3
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4.4k
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Error with Seurat subset function
Seurat scRNA-seq RNA-seq
4.2 years ago by Lucy ▴ 170
1
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4
replies
2.8k
views
Gini coefficient TCR repertoire
TCR-sequencing Gini
2.6 years ago by Lucy ▴ 170
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1
reply
2.8k
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Comment: Comment: Gini coefficient TCR repertoire
4.3 years ago by Lucy ▴ 170
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1
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2.4k
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Comment: Comment: Identification of modules of genes that vary over pseudotime (scRNA-seq pseudoti
4.4 years ago by Lucy ▴ 170
5
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3
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2.4k
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Identification of modules of genes that vary over pseudotime (scRNA-seq pseudotime analysis)
modules scRNA-seq singlecell pseudotime RNA-seq
updated 4.4 years ago by ★ 19k • written 4.4 years ago by ▴ 170
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0
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1.4k
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Comment: A: Negbinom vs. logistic regression for Seurat FindMarkers()
4.7 years ago by Lucy ▴ 170
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1
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1.4k
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Negbinom vs. logistic regression for Seurat FindMarkers()
scRNA-seq RNA-seq Seurat
4.7 years ago by Lucy ▴ 170
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1
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5.3k
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Comment: C: Differential expression analysis in Seurat
4.8 years ago by Lucy ▴ 170
2
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3
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5.3k
views
Differential expression analysis in Seurat
RNA-Seq scRNA-seq Seurat
updated 4.8 years ago by 13k • written 4.8 years ago by ▴ 170
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0
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3.0k
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Comment: C: Correlation plot sized by another variable
5.1 years ago by Lucy ▴ 170
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11
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3.0k
views
Correlation plot sized by another variable
ggplot2 correlation plot corrplot
updated 5.2 years ago by 5.1k • written 5.2 years ago by ▴ 170
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1
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3.0k
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Comment: C: Correlation plot sized by another variable
5.2 years ago by Lucy ▴ 170
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0
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3.0k
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Comment: C: Correlation plot sized by another variable
5.2 years ago by Lucy ▴ 170
0
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1
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3.0k
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Comment: C: Correlation plot sized by another variable
5.2 years ago by Lucy ▴ 170
0
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1
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3.0k
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Comment: A: Correlation plot sized by another variable
5.2 years ago by Lucy ▴ 170
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0
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9.2k
views
Comment: C: findGenomeMotif.pl in Homer couldn't work properly
5.8 years ago by Lucy ▴ 170
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1
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7.5k
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Comment: C: problem with HOMER findMotifsGenome.pl
5.8 years ago by Lucy ▴ 170
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0
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6.6k
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Comment: C: Which counts to use for RNA-seq heatmap and PCA?
5.8 years ago by Lucy ▴ 170
0
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2
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6.6k
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Comment: A: Which counts to use for RNA-seq heatmap and PCA?
5.8 years ago by Lucy ▴ 170
0
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0
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15k
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Comment: C: biplot scaling options (ggbiplot)
5.8 years ago by Lucy ▴ 170
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1
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15k
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Comment: A: biplot scaling options (ggbiplot)
5.8 years ago by Lucy ▴ 170
0
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4
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15k
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biplot scaling options (ggbiplot)
biplot PCA ggbiplot
5.8 years ago by Lucy ▴ 170
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1
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1.7k
views
Comment: C: DEsingle differential-expression analysis
5.8 years ago by Lucy ▴ 170
3
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4
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1.7k
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DEsingle differential-expression analysis
differential-expression analysis scRNA-seq
5.8 years ago by Lucy ▴ 170
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1
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5.0k
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Comment: C: Seurat sctransform return.only.var.genes = FALSE
5.9 years ago by Lucy ▴ 170
4
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5
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5.0k
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Seurat sctransform return.only.var.genes = FALSE
scRNA-seq Seurat sctransform
updated 5.9 years ago by ★ 19k • written 5.9 years ago by ▴ 170
1
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0
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5.0k
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Comment: C: Seurat sctransform return.only.var.genes = FALSE
5.9 years ago by Lucy ▴ 170
1
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0
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6.6k
views
Comment: C: RNA velocity on 5' 10x data?
5.9 years ago by Lucy ▴ 170
0
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0
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6.6k
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Comment: C: RNA velocity on 5' 10x data?
5.9 years ago by Lucy ▴ 170
5
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6
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6.6k
views
RNA velocity on 5' 10x data?
RNA-Seq scRNA-seq RNA velocity
updated 3.8 years ago by ▴ 10 • written 5.9 years ago by ▴ 170
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