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264
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Shared pathways up in disease blood and tissue relative to healthy blood (scRNA-seq)
scRNA-seq
updated 5 months ago by
ATpoint
84k • written 5 months ago by
Lucy
▴ 140
0
votes
0
replies
559
views
Specify the order of the sets in VennDiagram R?
VennDiagram
R
19 months ago by
Lucy
▴ 140
0
votes
2
replies
792
views
Move Cytoscape "CytoscapeConfiguration" directory
cytoscape
19 months ago by
Lucy
▴ 140
0
votes
0
replies
792
views
Comment:
Comment: Move Cytoscape "CytoscapeConfiguration" directory
19 months ago by
Lucy
▴ 140
0
votes
0
replies
2.1k
views
Comment:
Comment: Gini coefficient TCR repertoire
20 months ago by
Lucy
▴ 140
0
votes
0
replies
643
views
Comment:
Comment: How does --primary work with -M and --fractional options featureCounts?
2.6 years ago by
Lucy
▴ 140
0
votes
2
replies
643
views
How does --primary work with -M and --fractional options featureCounts?
RNA-seq
subread
mapping
featureCounts
STAR
2.6 years ago by
Lucy
▴ 140
0
votes
3
replies
2.3k
views
Comment:
Comment: featureCounts parameters
2.6 years ago by
Lucy
▴ 140
0
votes
0
replies
2.3k
views
Comment:
Comment: featureCounts parameters
2.6 years ago by
Lucy
▴ 140
1
vote
7
replies
2.3k
views
featureCounts parameters
RNA-seq
featureCounts
RNA-Seq
updated 2.5 years ago by
ATpoint
84k • written 2.6 years ago by
Lucy
▴ 140
6
votes
2
replies
3.1k
views
Seurat sctransform - does anyone know of a good explanation for biologists?
Seurat
scRNA-seq
normalization
updated 2.9 years ago by
Thomas
▴ 50 • written 2.9 years ago by
Lucy
▴ 140
0
votes
0
replies
945
views
Why do we log transform and scale data prior to PCA for scRNA-seq analysis
Seurat
log
transformation
scaling
scRNA-seq
updated 3.0 years ago by
Istvan Albert
101k • written 3.0 years ago by
Lucy
▴ 140
0
votes
0
replies
502
views
Goodness-of-fit test - observed vs. expected (some expected values < 5)
R
stats
goodness-of-fit
3.0 years ago by
Lucy
▴ 140
5
votes
9
replies
5.1k
views
Which counts to use for RNA-seq heatmap and PCA?
RNA-seq
heatmap
EdgeR
PCA
updated 3.1 years ago by
ATpoint
84k • written 4.8 years ago by
Lucy
▴ 140
0
votes
1
reply
5.1k
views
Comment:
Comment: Which counts to use for RNA-seq heatmap and PCA?
3.1 years ago by
Lucy
▴ 140
0
votes
1
reply
5.1k
views
Comment:
Comment: Which counts to use for RNA-seq heatmap and PCA?
3.1 years ago by
Lucy
▴ 140
1
vote
1
reply
7.9k
views
Comment:
Comment: GATK Input files reference and features have incompatible contigs: No overlappin
3.2 years ago by
Lucy
▴ 140
0
votes
0
replies
802
views
Comment:
Comment: Rename "SM" tag in read group only
3.2 years ago by
Lucy
▴ 140
0
votes
0
replies
522
views
Add SM group STAR
samtools
variant
RNA-seq
calling
GATK
STAR
3.2 years ago by
Lucy
▴ 140
0
votes
0
replies
3.3k
views
Comment:
Comment: Error with Seurat subset function
3.2 years ago by
Lucy
▴ 140
1
vote
3
replies
3.3k
views
Error with Seurat subset function
Seurat
scRNA-seq
RNA-seq
3.2 years ago by
Lucy
▴ 140
1
vote
4
replies
2.1k
views
Gini coefficient TCR repertoire
TCR-sequencing
Gini
20 months ago by
Lucy
▴ 140
0
votes
1
reply
2.1k
views
Comment:
Comment: Gini coefficient TCR repertoire
3.4 years ago by
Lucy
▴ 140
0
votes
1
reply
1.8k
views
Comment:
Comment: Identification of modules of genes that vary over pseudotime (scRNA-seq pseudoti
3.5 years ago by
Lucy
▴ 140
4
votes
3
replies
1.8k
views
Identification of modules of genes that vary over pseudotime (scRNA-seq pseudotime analysis)
modules
scRNA-seq
singlecell
pseudotime
RNA-seq
updated 3.5 years ago by
jared.andrews07
★ 17k • written 3.5 years ago by
Lucy
▴ 140
0
votes
0
replies
1.1k
views
Comment:
A: Negbinom vs. logistic regression for Seurat FindMarkers()
3.8 years ago by
Lucy
▴ 140
0
votes
1
reply
1.1k
views
Negbinom vs. logistic regression for Seurat FindMarkers()
scRNA-seq
RNA-seq
Seurat
3.8 years ago by
Lucy
▴ 140
0
votes
1
reply
4.2k
views
Comment:
C: Differential expression analysis in Seurat
3.8 years ago by
Lucy
▴ 140
2
votes
3
replies
4.2k
views
Differential expression analysis in Seurat
RNA-Seq
scRNA-seq
Seurat
updated 3.8 years ago by
rpolicastro
13k • written 3.8 years ago by
Lucy
▴ 140
0
votes
0
replies
2.0k
views
Comment:
C: Correlation plot sized by another variable
4.2 years ago by
Lucy
▴ 140
3
votes
11
replies
2.0k
views
Correlation plot sized by another variable
ggplot2
correlation plot
corrplot
updated 4.2 years ago by
Matthias Zepper
4.9k • written 4.2 years ago by
Lucy
▴ 140
0
votes
1
reply
2.0k
views
Comment:
C: Correlation plot sized by another variable
4.2 years ago by
Lucy
▴ 140
0
votes
0
replies
2.0k
views
Comment:
C: Correlation plot sized by another variable
4.2 years ago by
Lucy
▴ 140
0
votes
1
reply
2.0k
views
Comment:
C: Correlation plot sized by another variable
4.2 years ago by
Lucy
▴ 140
0
votes
1
reply
2.0k
views
Comment:
A: Correlation plot sized by another variable
4.2 years ago by
Lucy
▴ 140
0
votes
0
replies
7.7k
views
Comment:
C: findGenomeMotif.pl in Homer couldn't work properly
4.8 years ago by
Lucy
▴ 140
0
votes
1
reply
5.7k
views
Comment:
C: problem with HOMER findMotifsGenome.pl
4.8 years ago by
Lucy
▴ 140
0
votes
0
replies
5.1k
views
Comment:
C: Which counts to use for RNA-seq heatmap and PCA?
4.8 years ago by
Lucy
▴ 140
0
votes
2
replies
5.1k
views
Comment:
A: Which counts to use for RNA-seq heatmap and PCA?
4.8 years ago by
Lucy
▴ 140
0
votes
0
replies
14k
views
Comment:
C: biplot scaling options (ggbiplot)
4.9 years ago by
Lucy
▴ 140
0
votes
1
reply
14k
views
Comment:
A: biplot scaling options (ggbiplot)
4.9 years ago by
Lucy
▴ 140
0
votes
4
replies
14k
views
biplot scaling options (ggbiplot)
biplot
PCA
ggbiplot
4.9 years ago by
Lucy
▴ 140
0
votes
1
reply
1.3k
views
Comment:
C: DEsingle differential-expression analysis
4.9 years ago by
Lucy
▴ 140
3
votes
4
replies
1.3k
views
DEsingle differential-expression analysis
differential-expression analysis
scRNA-seq
4.9 years ago by
Lucy
▴ 140
0
votes
1
reply
3.8k
views
Comment:
C: Seurat sctransform return.only.var.genes = FALSE
4.9 years ago by
Lucy
▴ 140
4
votes
5
replies
3.8k
views
Seurat sctransform return.only.var.genes = FALSE
scRNA-seq
Seurat
sctransform
updated 4.9 years ago by
jared.andrews07
★ 17k • written 4.9 years ago by
Lucy
▴ 140
1
vote
0
replies
3.8k
views
Comment:
C: Seurat sctransform return.only.var.genes = FALSE
4.9 years ago by
Lucy
▴ 140
1
vote
0
replies
5.6k
views
Comment:
C: RNA velocity on 5' 10x data?
4.9 years ago by
Lucy
▴ 140
0
votes
0
replies
5.6k
views
Comment:
C: RNA velocity on 5' 10x data?
4.9 years ago by
Lucy
▴ 140
5
votes
6
replies
5.6k
views
RNA velocity on 5' 10x data?
RNA-Seq
scRNA-seq
RNA velocity
updated 2.9 years ago by
bioinformaticsBoy
▴ 10 • written 4.9 years ago by
Lucy
▴ 140
83 results • Page
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