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Advice regarding small RNA annotation to a newly sequenced genome
annotation smallRNA RNA-Seq R plyranges
3.4 years ago by Konstantinos Yeles ▴ 110
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6
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999
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Parallelization in R 2020
R parallel BiocParallel doParallel snowfall
updated 3.9 years ago by 11k • written 3.9 years ago by ▴ 110
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999
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Comment: C: Parallelization in R 2020
3.9 years ago by Konstantinos Yeles ▴ 110
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2
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999
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Comment: C: Parallelization in R 2020
3.9 years ago by Konstantinos Yeles ▴ 110
1
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2.6k
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Answer: A: Best way to find novel non-coding transcripts from stranded RNA-seq data
4.4 years ago by Konstantinos Yeles ▴ 110
4
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12
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1.5k
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Forum: publicly available data
arrayexpress GEO SRA
updated 10 months ago by 43k • written 4.6 years ago by ▴ 110
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1
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1.5k
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Comment: C: publicly available data
4.6 years ago by Konstantinos Yeles ▴ 110
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1
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1.5k
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Comment: C: publicly available data
4.6 years ago by Konstantinos Yeles ▴ 110
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2
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1.5k
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Comment: C: publicly available data
4.6 years ago by Konstantinos Yeles ▴ 110
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2
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1.5k
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Comment: C: publicly available data
4.6 years ago by Konstantinos Yeles ▴ 110
1
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1
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10k
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Answer: A: DESeq2 (or EdgeR) Exploratory Analysis with no Replicates
4.6 years ago by Konstantinos Yeles ▴ 110
2
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0
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5.5k
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Answer: A: RIP-Seq data analysis
4.7 years ago by Konstantinos Yeles ▴ 110
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1
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1.3k
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Comment: C: How to transform my TCGA data into this?
4.7 years ago by Konstantinos Yeles ▴ 110
6
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5
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1.1k
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RIP-seq identifing reverse complement reads between smallRNA and targeted mRNA
RIP-seq GenomicRanges R smallRNA
updated 5.0 years ago by ★ 1.3k • written 5.0 years ago by ▴ 110
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0
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1.1k
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Comment: C: RIP-seq identifing reverse complement reads between smallRNA and targeted mRNA
5.0 years ago by Konstantinos Yeles ▴ 110
0
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1
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1.1k
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Comment: C: RIP-seq identifing reverse complement reads between smallRNA and targeted mRNA
5.0 years ago by Konstantinos Yeles ▴ 110
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1.2k
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Comment: C: How to convert output from bowtie1 to Genomic ranges
5.2 years ago by Konstantinos Yeles ▴ 110
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1
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1.2k
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Comment: C: How to convert output from bowtie1 to Genomic ranges
5.2 years ago by Konstantinos Yeles ▴ 110
1
vote
4
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1.2k
views
How to convert output from bowtie1 to Genomic ranges
RNA-Seq GenomicRanges bowtie
updated 5.2 years ago by 82k • written 5.2 years ago by ▴ 110
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0
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3.6k
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Comment: C: smallRNA sequencing workflow and Database usage
5.3 years ago by Konstantinos Yeles ▴ 110
7
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8
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2.1k
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Normalization for small non-coding RNA (piRNAs)
normalization DEseq2 edgeR limma
updated 5.4 years ago by ★ 2.7k • written 5.4 years ago by ▴ 110
0
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0
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2.1k
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Comment: C: Normalization for small non-coding RNA (piRNAs)
5.4 years ago by Konstantinos Yeles ▴ 110
0
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1
reply
2.1k
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Comment: C: Normalization for small non-coding RNA (piRNAs)
5.4 years ago by Konstantinos Yeles ▴ 110
0
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0
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2.1k
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Comment: C: Normalization for small non-coding RNA (piRNAs)
5.4 years ago by Konstantinos Yeles ▴ 110
16
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9
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3.6k
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smallRNA sequencing workflow and Database usage
sRNA-Seq piRNA annotation normalization DEseq2
updated 5.5 years ago by ▴ 40 • written 5.5 years ago by ▴ 110
0
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0
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3.6k
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Comment: C: smallRNA sequencing workflow and Database usage
5.5 years ago by Konstantinos Yeles ▴ 110
0
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0
replies
3.6k
views
Comment: C: smallRNA sequencing workflow and Database usage
5.5 years ago by Konstantinos Yeles ▴ 110
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