Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
3
votes
1
reply
7.0k
views
Answer: A: Remove variants that are homozygous-reference (0/0) in two VCF files
7.9 years ago by William ★ 5.3k
1
vote
1
reply
1.9k
views
Answer: A: Functional Programming Examples for Students
7.9 years ago by William ★ 5.3k
3
votes
1
reply
10k
views
Answer: A: Add contig lenght to VCF header in a robust way
7.9 years ago by William ★ 5.3k
3
votes
2
replies
3.7k
views
Answer: A: Is there any other way to separate CNVs from SNVs and MNVs from vcf file of Ion
7.9 years ago by William ★ 5.3k
11
votes
4
replies
2.6k
views
10 to 1000X speedup of BWA read alignment trough compressive mapping: MIT CORA
bwa fastq alignment compression
updated 7.9 years ago by 20 • written 8.1 years ago by ★ 5.3k
1
vote
3
replies
4.6k
views
Breakdancer Bam2Cfg.Pl , Coefficient Of Variation Is Too Large, Not Excluding Outliers?
breakdancer
updated 7.9 years ago by 20 • written 10.7 years ago by ★ 5.3k
1
vote
0
replies
2.2k
views
Answer: A: How can I illustrate the importance of open source software in bioinformatics fo
8.0 years ago by William ★ 5.3k
0
votes
1
reply
2.6k
views
Comment: C: 10 to 1000X speedup of BWA read alignment trough compressive mapping: MIT CORA
8.1 years ago by William ★ 5.3k
2
votes
1
reply
4.7k
views
Answer: A: bcftools filter applied to specific sample column
8.1 years ago by William ★ 5.3k
3
votes
3
replies
5.3k
views
How To Set Validation_Stringency In The Picard Api Directly From Java
picard java api
updated 8.1 years ago by 20 • written 11.1 years ago by ★ 5.3k
6
votes
3
replies
2.9k
views
How To Use Unmapped Reads To Reconstruct Strains Specific Genome Segments?
denovo solid
updated 8.1 years ago by 8.5k • written 10.9 years ago by ★ 5.3k
5
votes
2
replies
1.7k
views
Is it good practice to convert lowest quality genotyes to missing?
vcf qc genotypes
updated 8.1 years ago by 12k • written 8.1 years ago by ★ 5.3k
0
votes
1
reply
4.9k
views
Comment: C: Output per variant and per sample heterozygosity fraction from VCF.
8.1 years ago by William ★ 5.3k
5
votes
8
replies
4.9k
views
Output per variant and per sample heterozygosity fraction from VCF.
vcf qc
updated 2.7 years ago by 161k • written 8.1 years ago by ★ 5.3k
0
votes
0
replies
4.9k
views
Comment: C: Output per variant and per sample heterozygosity fraction from VCF.
8.1 years ago by William ★ 5.3k
1
vote
1
reply
1.7k
views
Which Illumina data to generate for constructing benchmark SNP / SV genotypes
illumina benchmarking SNP SV
8.1 years ago by William ★ 5.3k
0
votes
0
replies
2.8k
views
Comment: C: How to plot a histogram for billions of genotype quality values?
8.2 years ago by William ★ 5.3k
6
votes
6
replies
2.8k
views
How to plot a histogram for billions of genotype quality values?
vcf quality R python
updated 8.2 years ago by ▴ 860 • written 8.2 years ago by ★ 5.3k
1
vote
0
replies
7.5k
views
Answer: A: Amzon EC2 for bioinformatics, genomics, NGS analysis
8.2 years ago by William ★ 5.3k
0
votes
5
replies
4.7k
views
How To Select A Private Snp With Gatk From A Multisample Vcf File
gatk snp
updated 8.3 years ago by 20 • written 11.3 years ago by ★ 5.3k
0
votes
0
replies
3.3k
views
Where to find gene annotation file for 1000 genomes phase 3 data / hs37d5/ b37 assembly .
gene annotation
updated 21 months ago by 43k • written 8.4 years ago by ★ 5.3k
21
votes
5
replies
8.9k
views
Best Discordant Pair Structural Variant (Sv) Caller?
vcf sv discordant variant caller
updated 8.5 years ago by 20k • written 10.8 years ago by ★ 5.3k
11
votes
3
replies
6.2k
views
Do freeBayes and platypus support gVCF (ie incremental variant calling for large sets of genomes)
platypus gvcf freebayes
updated 2.3 years ago by 43k • written 9.6 years ago by ★ 5.3k
0
votes
0
replies
4.2k
views
Comment: C: Cnvnator Genotype Regions Error : Can'T Find Bin 1000
8.5 years ago by William ★ 5.3k
5
votes
2
replies
3.7k
views
Library To Parse Absolute Reference Positions Of Indels From A Bam Cigar String
bam sv picard api
updated 8.6 years ago by 20 • written 10.8 years ago by ★ 5.3k
0
votes
0
replies
5.2k
views
Comment: C: How to annotate SNP variant records in a vcf file with IDs from a bed file?
8.6 years ago by William ★ 5.3k
2
votes
2
replies
5.2k
views
How to annotate SNP variant records in a vcf file with IDs from a bed file?
vcf bcftools bed
updated 20 months ago by 43k • written 8.6 years ago by ★ 5.3k
0
votes
0
replies
3.6k
views
Comment: Comment: BCFTools view equivelent of GATK -T SelectVariants -sn sample_x --excludeNonVari
updated 20 months ago by 43k • written 8.6 years ago by ★ 5.3k
2
votes
4
replies
3.6k
views
BCFTools view equivelent of GATK -T SelectVariants -sn sample_x --excludeNonVariants
bcftools gatk
updated 20 months ago by 43k • written 8.6 years ago by ★ 5.3k
0
votes
0
replies
3.6k
views
Comment: Comment: BCFTools view equivelent of GATK -T SelectVariants -sn sample_x --excludeNonVari
updated 20 months ago by 43k • written 8.6 years ago by ★ 5.3k
1
vote
1
reply
3.1k
views
how to add QualityOfDepth(QD) annotation to freebayes vcf
vcf qualitybydepth freebayes
updated 19 months ago by 43k • written 8.7 years ago by ★ 5.3k
0
votes
1
reply
3.3k
views
Answer: Answer: High School Researcher: Is it possible to gain access to publicly available whol
updated 20 months ago by 43k • written 8.6 years ago by ★ 5.3k
3
votes
1
reply
6.8k
views
Best VCF file validator
vcf
updated 20 months ago by 43k • written 8.7 years ago by ★ 5.3k
0
votes
0
replies
1.9k
views
Blog: Nature Milestone: Mass Spectrometry (editorials + milestones + collection of articles )
proteomics
updated 15 months ago by 43k • written 8.7 years ago by ★ 5.3k
0
votes
0
replies
6.3k
views
Comment: C: Perl6 and the Future of Bioinformatics - Compatibility and Integration
8.7 years ago by William ★ 5.3k
3
votes
0
replies
24k
views
Answer: Answer: Variant call format (VCF) file, how to get statistics per sample?
updated 19 months ago by 43k • written 8.8 years ago by ★ 5.3k
1
vote
0
replies
1.5k
views
Job: Scientist Biostatistics at DSM Biotechnology Center Genetics departement
biostatistics
updated 13 months ago by 43k • written 8.8 years ago by ★ 5.3k
0
votes
1
reply
4.6k
views
Answer: Answer: Google genomics cloud platform ?
updated 17 months ago by 43k • written 8.9 years ago by ★ 5.3k
0
votes
0
replies
3.0k
views
Installing mango genome browser: NoClassDefFoundError: org/eclipse/jetty/server/Handler
adam mango
updated 17 months ago by 43k • written 8.9 years ago by ★ 5.3k
4
votes
0
replies
2.4k
views
News: Google Genomics and Broad Institute Team Up to Tackle Genomic Data
google broad gatk
updated 17 months ago by 43k • written 8.9 years ago by ★ 5.3k
1
vote
0
replies
2.2k
views
Job: Senior Software Engineer – BigDataGenomics (Apache Spark / SNAP / Adam / Avocado ) at UC Berkeley AMPLab
Avocado SNAP Adam Apache-Spark BigDataGenomics
updated 14 months ago by 43k • written 8.9 years ago by ★ 5.3k
6
votes
4
replies
4.4k
views
6 follow
Forum: Is the read length of BGI/ CompleteGenomics Revolocity long enough to compete with Illumina X10?
revolocity x10 illumina
updated 16 months ago by 43k • written 8.9 years ago by ★ 5.3k
47
votes
9
replies
25k
views
Difference Between Somatic And Germline Variant Calling?
somatic gatk variant-calling
updated 9.1 years ago by 20 • written 10.7 years ago by ★ 5.3k
0
votes
0
replies
2.4k
views
Tools for automatic or semi-automatic extraction of ontology concepts from GEO meta-data to RDF.
rdf ontology GEO metadata
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 5.3k
0
votes
1
reply
2.7k
views
Answer: A: Recent Review / Best practices for (meta) micro array expression data analysis
9.2 years ago by William ★ 5.3k
6
votes
2
replies
2.7k
views
Recent Review / Best practices for (meta) micro array expression data analysis
microarray
updated 24 months ago by 43k • written 9.4 years ago by ★ 5.3k
0
votes
0
replies
1.8k
views
I2B2( Informatics for Integrating Biology and the Bedside or alternatives) still used /developed?
clinical
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 5.3k
11
votes
5
replies
3.8k
views
Forum: A global network of millions of genomes could be medicine’s next great advance. | Beacon
beacon genome internet global
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 5.3k
0
votes
0
replies
3.0k
views
Job: Scientific Programmer OHSU: Portland, OR, United States
scientific-programmer
updated 14 months ago by 43k • written 9.3 years ago by ★ 5.3k
2
votes
0
replies
3.8k
views
Answer: Answer: Official specs and API's for proteomics data (like Adam, VCF, HTS-JDK) (both fil
updated 2.1 years ago by 43k • written 9.3 years ago by ★ 5.3k
385 results • Page 4 of 8
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6