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0
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781
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Comment: Comment: BBtools specify java temp dir (or other java options)
20 months ago by FGV ▴ 170
0
votes
0
replies
808
views
Comment: Comment: Bowtie2 - Snakemake
20 months ago by FGV ▴ 170
0
votes
3
replies
781
views
BBtools specify java temp dir (or other java options)
bbtools
updated 20 months ago by 150k • written 20 months ago by ▴ 170
2
votes
2
replies
800
views
fasterq-dump downloads two or three files from a single-end run
fasterq-dump
updated 3.0 years ago by 102k • written 3.0 years ago by ▴ 170
0
votes
1
reply
973
views
Comment: Comment: (WHY?) Corrupted (truncated) fq.gz files when downloaded from safari
3.0 years ago by FGV ▴ 170
0
votes
0
replies
1.7k
views
Answer: Answer: When to merge BAM or SAM files?
updated 3.0 years ago by 45k • written 3.0 years ago by ▴ 170
1
vote
1
reply
2.2k
views
Comment: Comment: How to limit the resources of a snakemake rule?
3.2 years ago by FGV ▴ 170
2
votes
1
reply
2.2k
views
Answer: Answer: How to limit the resources of a snakemake rule?
3.2 years ago by FGV ▴ 170
1
vote
0
replies
610
views
GATK GenotypeGVCFs changes HET to REF_ALT
genotypegvcfs gatk genotyping haplotypecaller joint
3.2 years ago by FGV ▴ 170
8
votes
5
replies
10k
views
GNU parallel command with several multiple arguments
parallel gnu parallel
updated 4.6 years ago by ★ 4.5k • written 4.6 years ago by ▴ 170
0
votes
0
replies
10k
views
Comment: C: GNU parallel command with several multiple arguments
4.6 years ago by FGV ▴ 170
0
votes
1
reply
10k
views
Comment: C: GNU parallel command with several multiple arguments
4.6 years ago by FGV ▴ 170
0
votes
1
reply
972
views
Merge VCF INFO tags
vcf tags info
5.1 years ago by FGV ▴ 170
0
votes
1
reply
2.8k
views
Comment: A: filter VCF based on info field that has a key but no value
5.1 years ago by FGV ▴ 170
0
votes
0
replies
4.6k
views
Comment: C: Implement Bgzip Into C Program
updated 5.3 years ago by 45k • written 12.4 years ago by ▴ 170
0
votes
2
replies
3.0k
views
Annotate VCF on specific transcripts (ANN field)
vcf snpEff snpSift
updated 6.3 years ago by 165k • written 6.3 years ago by ▴ 170
0
votes
0
replies
920
views
Query UCSC Browser
ucsc api
6.6 years ago by FGV ▴ 170
0
votes
1
reply
2.2k
views
Answer: A: Paired-end and single-end reads combined during RNAseq - acceptable?
6.6 years ago by FGV ▴ 170
1
vote
0
replies
2.4k
views
Answer: A: Mapping scaffolds to chromosomes
6.6 years ago by FGV ▴ 170
0
votes
0
replies
2.9k
views
Answer: A: How can I make GATK fasta alternate reference maker faster
6.6 years ago by FGV ▴ 170
7
votes
26
replies
9.8k
views
6 follow
GNU parallel error: Command line too long
gnu parallel
6.6 years ago by FGV ▴ 170
1
vote
1
reply
9.8k
views
Answer: A: GNU parallel error: Command line too long
6.6 years ago by FGV ▴ 170
0
votes
1
reply
9.8k
views
Comment: C: GNU parallel error: Command line too long
6.7 years ago by FGV ▴ 170
0
votes
1
reply
9.8k
views
Comment: C: GNU parallel error: Command line too long
6.7 years ago by FGV ▴ 170
0
votes
1
reply
9.8k
views
Comment: C: GNU parallel error: Command line too long
6.7 years ago by FGV ▴ 170
0
votes
0
replies
9.8k
views
Comment: C: GNU parallel error: Command line too long
6.7 years ago by FGV ▴ 170
0
votes
1
reply
9.8k
views
Comment: C: GNU parallel error: Command line too long
6.7 years ago by FGV ▴ 170
0
votes
1
reply
9.8k
views
Comment: C: GNU parallel error: Command line too long
6.8 years ago by FGV ▴ 170
0
votes
1
reply
9.8k
views
Comment: C: GNU parallel error: Command line too long
6.8 years ago by FGV ▴ 170
0
votes
0
replies
9.8k
views
Comment: C: GNU parallel error: Command line too long
6.8 years ago by FGV ▴ 170
0
votes
0
replies
9.8k
views
Comment: C: GNU parallel error: Command line too long
6.8 years ago by FGV ▴ 170
0
votes
0
replies
9.8k
views
Comment: C: GNU parallel error: Command line too long
6.8 years ago by FGV ▴ 170
0
votes
1
reply
9.8k
views
Comment: C: GNU parallel error: Command line too long
6.8 years ago by FGV ▴ 170
0
votes
13
replies
2.5k
views
Assemble Amplicons from several samples
NGS Assembly next-gen sequencing
updated 7.8 years ago by 35k • written 7.8 years ago by ▴ 170
0
votes
0
replies
2.5k
views
Comment: C: Assemble Genome from several samples
7.8 years ago by FGV ▴ 170
0
votes
1
reply
2.5k
views
Comment: C: Assemble Genome from several samples
7.8 years ago by FGV ▴ 170
0
votes
1
reply
2.5k
views
Comment: C: Assemble Genome from several samples
7.8 years ago by FGV ▴ 170
0
votes
1
reply
2.5k
views
Comment: C: Assemble Genome from several samples
7.8 years ago by FGV ▴ 170
0
votes
2
replies
2.5k
views
Comment: C: Assemble Genome from several samples
7.8 years ago by FGV ▴ 170
3
votes
10
replies
4.6k
views
Implement Bgzip Into C Program
samtools tabix c
updated 10.7 years ago by 20 • written 12.4 years ago by ▴ 170
2
votes
9
replies
8.1k
views
Fit Mixture Of Gamma And Negative Binomial Distributions In R
r
updated 10.8 years ago by • 0 • written 12.8 years ago by ▴ 170
0
votes
1
reply
4.1k
views
Comment: C: Simulate Ngs Mapped Reads
12.0 years ago by FGV ▴ 170
6
votes
5
replies
4.1k
views
Simulate Ngs Mapped Reads
ngs simulation reads
12.0 years ago by FGV ▴ 170
1
vote
1
reply
4.1k
views
Comment: C: Simulate Ngs Mapped Reads
12.0 years ago by FGV ▴ 170
2
votes
0
replies
4.6k
views
Answer: A: Implement Bgzip Into C Program
12.4 years ago by FGV ▴ 170
0
votes
1
reply
4.6k
views
Comment: C: Implement Bgzip Into C Program
12.4 years ago by FGV ▴ 170
0
votes
1
reply
14k
views
Answer: A: How To Fix Fastq File From Sra When Fastq-Dump Split At Wrong Position
12.6 years ago by FGV ▴ 170
0
votes
1
reply
3.5k
views
Comment: C: Samtools Vcf Reference And Alternate Alleles
12.7 years ago by FGV ▴ 170
2
votes
3
replies
3.5k
views
Samtools Vcf Reference And Alternate Alleles
samtools vcf
updated 12.7 years ago by 14k • written 12.7 years ago by ▴ 170
2
votes
0
replies
8.0k
views
Answer: A: Filtering Out Reads Based On Base Quality With Samtools Seems Not To Work Proper
12.8 years ago by FGV ▴ 170
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