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Comment: Comment: BBtools specify java temp dir (or other java options)
9 months ago by FGV ▴ 170
0
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0
replies
582
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Comment: Comment: Bowtie2 - Snakemake
9 months ago by FGV ▴ 170
0
votes
3
replies
480
views
BBtools specify java temp dir (or other java options)
bbtools
updated 9 months ago by 141k • written 9 months ago by ▴ 170
2
votes
2
replies
536
views
fasterq-dump downloads two or three files from a single-end run
fasterq-dump
updated 2.1 years ago by 100k • written 2.1 years ago by ▴ 170
0
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1
reply
676
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Comment: Comment: (WHY?) Corrupted (truncated) fq.gz files when downloaded from safari
2.1 years ago by FGV ▴ 170
0
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0
replies
1.1k
views
Answer: Answer: When to merge BAM or SAM files?
updated 2.1 years ago by 43k • written 2.1 years ago by ▴ 170
1
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1
reply
1.5k
views
Comment: Comment: How to limit the resources of a snakemake rule?
2.3 years ago by FGV ▴ 170
2
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1
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1.5k
views
Answer: Answer: How to limit the resources of a snakemake rule?
2.3 years ago by FGV ▴ 170
1
vote
0
replies
477
views
GATK GenotypeGVCFs changes HET to REF_ALT
genotypegvcfs gatk genotyping haplotypecaller joint
2.3 years ago by FGV ▴ 170
8
votes
5
replies
8.2k
views
GNU parallel command with several multiple arguments
parallel gnu parallel
updated 3.7 years ago by ★ 4.4k • written 3.7 years ago by ▴ 170
0
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0
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8.2k
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Comment: C: GNU parallel command with several multiple arguments
3.7 years ago by FGV ▴ 170
0
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1
reply
8.2k
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Comment: C: GNU parallel command with several multiple arguments
3.7 years ago by FGV ▴ 170
0
votes
1
reply
807
views
Merge VCF INFO tags
vcf tags info
4.2 years ago by FGV ▴ 170
0
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1
reply
2.4k
views
Comment: A: filter VCF based on info field that has a key but no value
4.2 years ago by FGV ▴ 170
0
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0
replies
4.1k
views
Comment: C: Implement Bgzip Into C Program
updated 4.4 years ago by 43k • written 11.5 years ago by ▴ 170
0
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2
replies
2.7k
views
Annotate VCF on specific transcripts (ANN field)
vcf snpEff snpSift
updated 5.4 years ago by 161k • written 5.4 years ago by ▴ 170
0
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0
replies
836
views
Query UCSC Browser
ucsc api
5.7 years ago by FGV ▴ 170
0
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1
reply
1.8k
views
Answer: A: Paired-end and single-end reads combined during RNAseq - acceptable?
5.7 years ago by FGV ▴ 170
1
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0
replies
2.1k
views
Answer: A: Mapping scaffolds to chromosomes
5.7 years ago by FGV ▴ 170
0
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0
replies
2.4k
views
Answer: A: How can I make GATK fasta alternate reference maker faster
5.7 years ago by FGV ▴ 170
7
votes
26
replies
7.9k
views
6 follow
GNU parallel error: Command line too long
gnu parallel
5.7 years ago by FGV ▴ 170
1
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1
reply
7.9k
views
Answer: A: GNU parallel error: Command line too long
5.7 years ago by FGV ▴ 170
0
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1
reply
7.9k
views
Comment: C: GNU parallel error: Command line too long
5.8 years ago by FGV ▴ 170
0
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1
reply
7.9k
views
Comment: C: GNU parallel error: Command line too long
5.8 years ago by FGV ▴ 170
0
votes
1
reply
7.9k
views
Comment: C: GNU parallel error: Command line too long
5.8 years ago by FGV ▴ 170
0
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0
replies
7.9k
views
Comment: C: GNU parallel error: Command line too long
5.8 years ago by FGV ▴ 170
0
votes
1
reply
7.9k
views
Comment: C: GNU parallel error: Command line too long
5.8 years ago by FGV ▴ 170
0
votes
1
reply
7.9k
views
Comment: C: GNU parallel error: Command line too long
5.8 years ago by FGV ▴ 170
0
votes
1
reply
7.9k
views
Comment: C: GNU parallel error: Command line too long
5.8 years ago by FGV ▴ 170
0
votes
0
replies
7.9k
views
Comment: C: GNU parallel error: Command line too long
5.9 years ago by FGV ▴ 170
0
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0
replies
7.9k
views
Comment: C: GNU parallel error: Command line too long
5.9 years ago by FGV ▴ 170
0
votes
0
replies
7.9k
views
Comment: C: GNU parallel error: Command line too long
5.9 years ago by FGV ▴ 170
0
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1
reply
7.9k
views
Comment: C: GNU parallel error: Command line too long
5.9 years ago by FGV ▴ 170
0
votes
13
replies
2.0k
views
Assemble Amplicons from several samples
NGS Assembly next-gen sequencing
updated 6.9 years ago by 35k • written 6.9 years ago by ▴ 170
0
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0
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2.0k
views
Comment: C: Assemble Genome from several samples
6.9 years ago by FGV ▴ 170
0
votes
1
reply
2.0k
views
Comment: C: Assemble Genome from several samples
6.9 years ago by FGV ▴ 170
0
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1
reply
2.0k
views
Comment: C: Assemble Genome from several samples
6.9 years ago by FGV ▴ 170
0
votes
1
reply
2.0k
views
Comment: C: Assemble Genome from several samples
6.9 years ago by FGV ▴ 170
0
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2
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2.0k
views
Comment: C: Assemble Genome from several samples
6.9 years ago by FGV ▴ 170
3
votes
10
replies
4.1k
views
Implement Bgzip Into C Program
samtools tabix c
updated 9.8 years ago by 20 • written 11.5 years ago by ▴ 170
2
votes
9
replies
7.5k
views
Fit Mixture Of Gamma And Negative Binomial Distributions In R
r
updated 9.9 years ago by • 0 • written 11.9 years ago by ▴ 170
0
votes
1
reply
3.8k
views
Comment: C: Simulate Ngs Mapped Reads
11.1 years ago by FGV ▴ 170
6
votes
5
replies
3.8k
views
Simulate Ngs Mapped Reads
ngs simulation reads
11.1 years ago by FGV ▴ 170
1
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1
reply
3.8k
views
Comment: C: Simulate Ngs Mapped Reads
11.1 years ago by FGV ▴ 170
2
votes
0
replies
4.1k
views
Answer: A: Implement Bgzip Into C Program
11.5 years ago by FGV ▴ 170
0
votes
1
reply
4.1k
views
Comment: C: Implement Bgzip Into C Program
11.5 years ago by FGV ▴ 170
0
votes
1
reply
13k
views
Answer: A: How To Fix Fastq File From Sra When Fastq-Dump Split At Wrong Position
11.7 years ago by FGV ▴ 170
0
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1
reply
3.3k
views
Comment: C: Samtools Vcf Reference And Alternate Alleles
11.7 years ago by FGV ▴ 170
2
votes
3
replies
3.3k
views
Samtools Vcf Reference And Alternate Alleles
samtools vcf
updated 11.7 years ago by 14k • written 11.7 years ago by ▴ 170
2
votes
0
replies
7.7k
views
Answer: A: Filtering Out Reads Based On Base Quality With Samtools Seems Not To Work Proper
11.9 years ago by FGV ▴ 170
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