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0
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5
replies
3.3k
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relationship between PI_HAT and --king-cutoff coefficient?
plink pihat ibd
updated 9 months ago by 9.9k • written 2.8 years ago by ▴ 180
0
votes
2
replies
787
views
individual-level allele frequencies
allele frequencies clustering plink
updated 18 months ago by 9.9k • written 2.4 years ago by ▴ 180
0
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3
replies
1.9k
views
How to calculate genotype concordance, comparing two .vcf files with Picard or SnpSift
picard GenotypeConcordance SnpSift
updated 18 months ago by 152k • written 2.4 years ago by ▴ 180
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0
replies
367
views
How to calculate power to detect mQTLs?
Illumina power mqtl methylation
22 months ago by anamaria ▴ 180
0
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0
replies
729
views
Comment: C: Recommendations for genome-wide genotyping platform, array and data analysis sof
23 months ago by anamaria ▴ 180
0
votes
1
reply
729
views
Comment: C: Recommendations for genome-wide genotyping platform, array and data analysis sof
23 months ago by anamaria ▴ 180
0
votes
0
replies
729
views
Comment: C: Recommendations for genome-wide genotyping platform, array and data analysis sof
23 months ago by anamaria ▴ 180
0
votes
1
reply
729
views
Comment: C: Recommendations for genome-wide genotyping platform, array and data analysis sof
23 months ago by anamaria ▴ 180
0
votes
1
reply
729
views
Comment: C: Recommendations for genome-wide genotyping platform, array and data analysis sof
23 months ago by anamaria ▴ 180
6
votes
11
replies
729
views
Recommendations for genome-wide genotyping platform, array and data analysis software?
genotyping
23 months ago by anamaria ▴ 180
0
votes
1
reply
952
views
Comment: C: How to plot alignment statistics; how many reads are mapped to the genome?
24 months ago by anamaria ▴ 180
3
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3
replies
952
views
How to plot alignment statistics; how many reads are mapped to the genome?
samtools RNA-Seq
24 months ago by anamaria ▴ 180
0
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0
replies
781
views
How to include BETA and SE in output of METAL
metal beta se gwas metagwas
updated 2.2 years ago by 37k • written 2.2 years ago by ▴ 180
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1
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7.0k
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Comment: Comment: Output of METAL meta-analysis: which allele does the beta refer to?
updated 12 months ago by 37k • written 2.2 years ago by ▴ 180
3
votes
2
replies
1.5k
views
How to download HES files from UKBiobank and how to create phenotype file?
ukbiobank
updated 2.3 years ago by • 0 • written 3.6 years ago by ▴ 180
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0
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1.9k
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Comment: C: B allele frequency SNP array
2.3 years ago by anamaria ▴ 180
0
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0
replies
1.9k
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Comment: C: B allele frequency SNP array
2.3 years ago by anamaria ▴ 180
0
votes
0
replies
484
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how do I create .dat file format for mach2dat software association analysis?
mach2dat associationanalysis dat
updated 2.3 years ago by 37k • written 2.4 years ago by ▴ 180
0
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0
replies
1.4k
views
Comment: C: erro came out during the installation of Birdsuite
2.4 years ago by anamaria ▴ 180
0
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0
replies
690
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Comment: C: Why different reference panels change the signal for a SNP?
2.4 years ago by anamaria ▴ 180
1
vote
2
replies
690
views
Why different reference panels change the signal for a SNP?
referencepanel hapmap hrc imputation
updated 2.4 years ago by ▴ 720 • written 2.4 years ago by ▴ 180
0
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0
replies
924
views
Comment: C: Difference in imputation between platforms and RS names
2.4 years ago by anamaria ▴ 180
0
votes
1
reply
924
views
Comment: C: Difference in imputation between platforms and RS names
2.4 years ago by anamaria ▴ 180
0
votes
1
reply
924
views
Comment: C: Difference in imputation between platforms and RS names
2.4 years ago by anamaria ▴ 180
0
votes
1
reply
924
views
Comment: C: Difference in imputation between platforms and RS names
2.4 years ago by anamaria ▴ 180
0
votes
1
reply
924
views
Comment: C: Difference in imputation between platforms and RS names
2.4 years ago by anamaria ▴ 180
0
votes
1
reply
924
views
Comment: C: Difference in imputation between platforms and RS names
2.4 years ago by anamaria ▴ 180
1
vote
10
replies
924
views
Difference in imputation between platforms and RS names
minimac mach imputation rs snps
updated 2.4 years ago by 84k • written 2.4 years ago by ▴ 180
0
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0
replies
7.5k
views
Comment: C: PLINK logistic regression analysis and covariates
2.4 years ago by anamaria ▴ 180
0
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0
replies
7.5k
views
Comment: C: PLINK logistic regression analysis and covariates
2.4 years ago by anamaria ▴ 180
0
votes
2
replies
7.5k
views
Comment: C: PLINK logistic regression analysis and covariates
2.4 years ago by anamaria ▴ 180
0
votes
1
reply
7.5k
views
Comment: C: PLINK logistic regression analysis and covariates
2.4 years ago by anamaria ▴ 180
0
votes
1
reply
7.5k
views
Comment: C: PLINK logistic regression analysis and covariates
2.4 years ago by anamaria ▴ 180
0
votes
0
replies
7.0k
views
Comment: C: GATK: Unzipped files Cannot Find GenomeAnalysisTK.jar?
2.4 years ago by anamaria ▴ 180
0
votes
0
replies
985
views
Error: the variance-covaraince matrix V is not invertible in GCTA / genetic correlation
gcta genetic correlation
2.4 years ago by anamaria ▴ 180
0
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1
reply
3.9k
views
Comment: C: Pruning GWAS summary statistics for LD
2.4 years ago by anamaria ▴ 180
0
votes
0
replies
4.7k
views
Comment: C: Find Genotype concordance
2.4 years ago by anamaria ▴ 180
0
votes
0
replies
1.2k
views
Comment: C: understanding snpEff/snpSift concordance output
2.4 years ago by anamaria ▴ 180
0
votes
0
replies
652
views
I/O error when converting Plink files to Merlin format for imputation using MACH?
mega2 imputation mach
updated 2.5 years ago by 20 • written 2.6 years ago by ▴ 180
0
votes
0
replies
474
views
Recommendation for software estimate the relative contribution of eQTLs to the heritability of complex traits
heritability eqtls
2.5 years ago by anamaria ▴ 180
0
votes
1
reply
766
views
Comment: C: Recommendations for software for power analysis of paired sample experiment for
2.5 years ago by anamaria ▴ 180
0
votes
3
replies
766
views
Recommendations for software for power analysis of paired sample experiment for RNAseq data
RNAseq power
2.5 years ago by anamaria ▴ 180
0
votes
1
reply
902
views
Comment: C: Interpretation of results from ssizeRNA power analysis
2.5 years ago by anamaria ▴ 180
0
votes
0
replies
902
views
Comment: C: Interpretation of results from ssizeRNA power analysis
2.5 years ago by anamaria ▴ 180
2
votes
4
replies
902
views
Interpretation of results from ssizeRNA power analysis
ssizeRNA power
updated 2.5 years ago by ▴ 160 • written 2.5 years ago by ▴ 180
0
votes
0
replies
443
views
Calculating power using ssizeRNA
ssizeRNA genecounts
2.5 years ago by anamaria ▴ 180
0
votes
1
reply
1.2k
views
Comment: C: How to decide which Principal Components are the most correlated with with covar
2.5 years ago by anamaria ▴ 180
0
votes
1
reply
1.2k
views
Comment: C: How to decide which Principal Components are the most correlated with with covar
2.5 years ago by anamaria ▴ 180
1
vote
4
replies
1.2k
views
How to decide which Principal Components are the most correlated with with covariates for plink regression?
covariates principal componets plink regression
updated 2.5 years ago by 84k • written 2.5 years ago by ▴ 180
0
votes
1
reply
22k
views
Comment: C: Produce PCA bi-plot for 1000 Genomes Phase III in VCF format (old)
2.6 years ago by anamaria ▴ 180
140 results • Page 1 of 3
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