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5
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3.4k
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relationship between PI_HAT and --king-cutoff coefficient?
plink pihat ibd
updated 11 months ago by 10.0k • written 2.9 years ago by ▴ 180
0
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2
replies
819
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individual-level allele frequencies
allele frequencies clustering plink
updated 19 months ago by 10.0k • written 2.6 years ago by ▴ 180
0
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3
replies
2.0k
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How to calculate genotype concordance, comparing two .vcf files with Picard or SnpSift
picard GenotypeConcordance SnpSift
updated 19 months ago by 153k • written 2.5 years ago by ▴ 180
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0
replies
389
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How to calculate power to detect mQTLs?
Illumina power mqtl methylation
23 months ago by anamaria ▴ 180
0
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0
replies
759
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Comment: C: Recommendations for genome-wide genotyping platform, array and data analysis sof
2.1 years ago by anamaria ▴ 180
0
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1
reply
759
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Comment: C: Recommendations for genome-wide genotyping platform, array and data analysis sof
2.1 years ago by anamaria ▴ 180
0
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0
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759
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Comment: C: Recommendations for genome-wide genotyping platform, array and data analysis sof
2.1 years ago by anamaria ▴ 180
0
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1
reply
759
views
Comment: C: Recommendations for genome-wide genotyping platform, array and data analysis sof
2.1 years ago by anamaria ▴ 180
0
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1
reply
759
views
Comment: C: Recommendations for genome-wide genotyping platform, array and data analysis sof
2.1 years ago by anamaria ▴ 180
6
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11
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759
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Recommendations for genome-wide genotyping platform, array and data analysis software?
genotyping
2.1 years ago by anamaria ▴ 180
0
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1
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1.0k
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Comment: C: How to plot alignment statistics; how many reads are mapped to the genome?
2.1 years ago by anamaria ▴ 180
3
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3
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1.0k
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How to plot alignment statistics; how many reads are mapped to the genome?
samtools RNA-Seq
2.1 years ago by anamaria ▴ 180
0
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0
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822
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How to include BETA and SE in output of METAL
metal beta se gwas metagwas
updated 2.3 years ago by 38k • written 2.3 years ago by ▴ 180
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1
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7.3k
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Comment: Comment: Output of METAL meta-analysis: which allele does the beta refer to?
updated 13 months ago by 38k • written 2.3 years ago by ▴ 180
3
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2
replies
1.6k
views
How to download HES files from UKBiobank and how to create phenotype file?
ukbiobank
updated 2.4 years ago by • 0 • written 3.7 years ago by ▴ 180
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0
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1.9k
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Comment: C: B allele frequency SNP array
2.4 years ago by anamaria ▴ 180
0
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0
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1.9k
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Comment: C: B allele frequency SNP array
2.4 years ago by anamaria ▴ 180
0
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0
replies
497
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how do I create .dat file format for mach2dat software association analysis?
mach2dat associationanalysis dat
updated 2.4 years ago by 38k • written 2.5 years ago by ▴ 180
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0
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1.4k
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Comment: C: erro came out during the installation of Birdsuite
2.5 years ago by anamaria ▴ 180
0
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0
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707
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Comment: C: Why different reference panels change the signal for a SNP?
2.5 years ago by anamaria ▴ 180
1
vote
2
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707
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Why different reference panels change the signal for a SNP?
referencepanel hapmap hrc imputation
updated 2.5 years ago by ▴ 720 • written 2.5 years ago by ▴ 180
0
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0
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953
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Comment: C: Difference in imputation between platforms and RS names
2.5 years ago by anamaria ▴ 180
0
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1
reply
953
views
Comment: C: Difference in imputation between platforms and RS names
2.5 years ago by anamaria ▴ 180
0
votes
1
reply
953
views
Comment: C: Difference in imputation between platforms and RS names
2.5 years ago by anamaria ▴ 180
0
votes
1
reply
953
views
Comment: C: Difference in imputation between platforms and RS names
2.5 years ago by anamaria ▴ 180
0
votes
1
reply
953
views
Comment: C: Difference in imputation between platforms and RS names
2.5 years ago by anamaria ▴ 180
0
votes
1
reply
953
views
Comment: C: Difference in imputation between platforms and RS names
2.5 years ago by anamaria ▴ 180
1
vote
10
replies
953
views
Difference in imputation between platforms and RS names
minimac mach imputation rs snps
updated 2.5 years ago by 84k • written 2.5 years ago by ▴ 180
0
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0
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7.7k
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Comment: C: PLINK logistic regression analysis and covariates
2.5 years ago by anamaria ▴ 180
0
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0
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7.7k
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Comment: C: PLINK logistic regression analysis and covariates
2.5 years ago by anamaria ▴ 180
0
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2
replies
7.7k
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Comment: C: PLINK logistic regression analysis and covariates
2.5 years ago by anamaria ▴ 180
0
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1
reply
7.7k
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Comment: C: PLINK logistic regression analysis and covariates
2.5 years ago by anamaria ▴ 180
0
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1
reply
7.7k
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Comment: C: PLINK logistic regression analysis and covariates
2.5 years ago by anamaria ▴ 180
0
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0
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7.1k
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Comment: C: GATK: Unzipped files Cannot Find GenomeAnalysisTK.jar?
2.5 years ago by anamaria ▴ 180
0
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0
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1.0k
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Error: the variance-covaraince matrix V is not invertible in GCTA / genetic correlation
gcta genetic correlation
2.5 years ago by anamaria ▴ 180
0
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1
reply
4.0k
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Comment: C: Pruning GWAS summary statistics for LD
2.5 years ago by anamaria ▴ 180
0
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0
replies
4.8k
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Comment: C: Find Genotype concordance
2.5 years ago by anamaria ▴ 180
0
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0
replies
1.2k
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Comment: C: understanding snpEff/snpSift concordance output
2.5 years ago by anamaria ▴ 180
0
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0
replies
665
views
I/O error when converting Plink files to Merlin format for imputation using MACH?
mega2 imputation mach
updated 2.6 years ago by 20 • written 2.7 years ago by ▴ 180
0
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0
replies
484
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Recommendation for software estimate the relative contribution of eQTLs to the heritability of complex traits
heritability eqtls
2.6 years ago by anamaria ▴ 180
0
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1
reply
792
views
Comment: C: Recommendations for software for power analysis of paired sample experiment for
2.6 years ago by anamaria ▴ 180
0
votes
3
replies
792
views
Recommendations for software for power analysis of paired sample experiment for RNAseq data
RNAseq power
2.6 years ago by anamaria ▴ 180
0
votes
1
reply
954
views
Comment: C: Interpretation of results from ssizeRNA power analysis
2.6 years ago by anamaria ▴ 180
0
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0
replies
954
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Comment: C: Interpretation of results from ssizeRNA power analysis
2.6 years ago by anamaria ▴ 180
2
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4
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954
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Interpretation of results from ssizeRNA power analysis
ssizeRNA power
updated 2.6 years ago by ▴ 160 • written 2.6 years ago by ▴ 180
0
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0
replies
452
views
Calculating power using ssizeRNA
ssizeRNA genecounts
2.6 years ago by anamaria ▴ 180
0
votes
1
reply
1.3k
views
Comment: C: How to decide which Principal Components are the most correlated with with covar
2.7 years ago by anamaria ▴ 180
0
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1
reply
1.3k
views
Comment: C: How to decide which Principal Components are the most correlated with with covar
2.7 years ago by anamaria ▴ 180
1
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4
replies
1.3k
views
How to decide which Principal Components are the most correlated with with covariates for plink regression?
covariates principal componets plink regression
updated 2.7 years ago by 84k • written 2.7 years ago by ▴ 180
0
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1
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23k
views
Comment: C: Produce PCA bi-plot for 1000 Genomes Phase III in VCF format (old)
2.7 years ago by anamaria ▴ 180
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