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1
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5
replies
5.3k
views
relationship between PI_HAT and --king-cutoff coefficient?
plink pihat ibd
updated 2.0 years ago by 10k • written 4.0 years ago by ▴ 220
0
votes
2
replies
1.1k
views
individual-level allele frequencies
allele frequencies clustering plink
updated 2.7 years ago by 10k • written 3.6 years ago by ▴ 220
0
votes
3
replies
2.7k
views
How to calculate genotype concordance, comparing two .vcf files with Picard or SnpSift
picard GenotypeConcordance SnpSift
updated 2.7 years ago by 161k • written 3.6 years ago by ▴ 220
0
votes
0
replies
528
views
How to calculate power to detect mQTLs?
Illumina power mqtl methylation
3.1 years ago by anamaria ▴ 220
0
votes
0
replies
1.1k
views
Comment: C: Recommendations for genome-wide genotyping platform, array and data analysis sof
3.2 years ago by anamaria ▴ 220
0
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1
reply
1.1k
views
Comment: C: Recommendations for genome-wide genotyping platform, array and data analysis sof
3.2 years ago by anamaria ▴ 220
0
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0
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1.1k
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Comment: C: Recommendations for genome-wide genotyping platform, array and data analysis sof
3.2 years ago by anamaria ▴ 220
0
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1
reply
1.1k
views
Comment: C: Recommendations for genome-wide genotyping platform, array and data analysis sof
3.2 years ago by anamaria ▴ 220
0
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1
reply
1.1k
views
Comment: C: Recommendations for genome-wide genotyping platform, array and data analysis sof
3.2 years ago by anamaria ▴ 220
6
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11
replies
1.1k
views
Recommendations for genome-wide genotyping platform, array and data analysis software?
genotyping
3.2 years ago by anamaria ▴ 220
0
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1
reply
1.5k
views
Comment: C: How to plot alignment statistics; how many reads are mapped to the genome?
3.2 years ago by anamaria ▴ 220
3
votes
3
replies
1.5k
views
How to plot alignment statistics; how many reads are mapped to the genome?
samtools RNA-Seq
3.2 years ago by anamaria ▴ 220
0
votes
0
replies
1.2k
views
How to include BETA and SE in output of METAL
metal beta se gwas metagwas
updated 3.4 years ago by 43k • written 3.4 years ago by ▴ 220
0
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1
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9.2k
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Comment: Comment: Output of METAL meta-analysis: which allele does the beta refer to?
updated 2.2 years ago by 43k • written 3.4 years ago by ▴ 220
3
votes
2
replies
1.9k
views
How to download HES files from UKBiobank and how to create phenotype file?
ukbiobank
updated 3.5 years ago by • 0 • written 4.8 years ago by ▴ 220
0
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0
replies
2.5k
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Comment: C: B allele frequency SNP array
3.5 years ago by anamaria ▴ 220
0
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0
replies
2.5k
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Comment: C: B allele frequency SNP array
3.5 years ago by anamaria ▴ 220
0
votes
0
replies
626
views
how do I create .dat file format for mach2dat software association analysis?
mach2dat associationanalysis dat
updated 3.5 years ago by 43k • written 3.6 years ago by ▴ 220
0
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0
replies
1.7k
views
Comment: C: erro came out during the installation of Birdsuite
3.6 years ago by anamaria ▴ 220
0
votes
0
replies
948
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Comment: C: Why different reference panels change the signal for a SNP?
3.6 years ago by anamaria ▴ 220
1
vote
2
replies
948
views
Why different reference panels change the signal for a SNP?
referencepanel hapmap hrc imputation
updated 3.6 years ago by ▴ 750 • written 3.6 years ago by ▴ 220
0
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0
replies
1.4k
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Comment: C: Difference in imputation between platforms and RS names
3.6 years ago by anamaria ▴ 220
0
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1
reply
1.4k
views
Comment: C: Difference in imputation between platforms and RS names
3.6 years ago by anamaria ▴ 220
0
votes
1
reply
1.4k
views
Comment: C: Difference in imputation between platforms and RS names
3.6 years ago by anamaria ▴ 220
0
votes
1
reply
1.4k
views
Comment: C: Difference in imputation between platforms and RS names
3.6 years ago by anamaria ▴ 220
0
votes
1
reply
1.4k
views
Comment: C: Difference in imputation between platforms and RS names
3.6 years ago by anamaria ▴ 220
0
votes
1
reply
1.4k
views
Comment: C: Difference in imputation between platforms and RS names
3.6 years ago by anamaria ▴ 220
1
vote
10
replies
1.4k
views
Difference in imputation between platforms and RS names
minimac mach imputation rs snps
updated 3.6 years ago by 87k • written 3.6 years ago by ▴ 220
0
votes
0
replies
10k
views
Comment: C: PLINK logistic regression analysis and covariates
3.6 years ago by anamaria ▴ 220
0
votes
0
replies
10k
views
Comment: C: PLINK logistic regression analysis and covariates
3.6 years ago by anamaria ▴ 220
0
votes
2
replies
10k
views
Comment: C: PLINK logistic regression analysis and covariates
3.6 years ago by anamaria ▴ 220
0
votes
1
reply
10k
views
Comment: C: PLINK logistic regression analysis and covariates
3.6 years ago by anamaria ▴ 220
0
votes
1
reply
10k
views
Comment: C: PLINK logistic regression analysis and covariates
3.6 years ago by anamaria ▴ 220
0
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0
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7.8k
views
Comment: C: GATK: Unzipped files Cannot Find GenomeAnalysisTK.jar?
3.6 years ago by anamaria ▴ 220
0
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0
replies
1.5k
views
Error: the variance-covaraince matrix V is not invertible in GCTA / genetic correlation
gcta genetic correlation
3.6 years ago by anamaria ▴ 220
0
votes
1
reply
5.5k
views
Comment: C: Pruning GWAS summary statistics for LD
3.6 years ago by anamaria ▴ 220
0
votes
0
replies
5.5k
views
Comment: C: Find Genotype concordance
3.6 years ago by anamaria ▴ 220
0
votes
0
replies
1.6k
views
Comment: C: understanding snpEff/snpSift concordance output
3.6 years ago by anamaria ▴ 220
0
votes
0
replies
825
views
I/O error when converting Plink files to Merlin format for imputation using MACH?
mega2 imputation mach
updated 3.7 years ago by 20 • written 3.8 years ago by ▴ 220
0
votes
0
replies
644
views
Recommendation for software estimate the relative contribution of eQTLs to the heritability of complex traits
heritability eqtls
3.7 years ago by anamaria ▴ 220
0
votes
1
reply
1.0k
views
Comment: C: Recommendations for software for power analysis of paired sample experiment for
3.7 years ago by anamaria ▴ 220
0
votes
3
replies
1.0k
views
Recommendations for software for power analysis of paired sample experiment for RNAseq data
RNAseq power
3.7 years ago by anamaria ▴ 220
0
votes
1
reply
1.3k
views
Comment: C: Interpretation of results from ssizeRNA power analysis
3.7 years ago by anamaria ▴ 220
0
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0
replies
1.3k
views
Comment: C: Interpretation of results from ssizeRNA power analysis
3.7 years ago by anamaria ▴ 220
2
votes
4
replies
1.3k
views
Interpretation of results from ssizeRNA power analysis
ssizeRNA power
updated 3.7 years ago by ▴ 180 • written 3.7 years ago by ▴ 220
0
votes
0
replies
596
views
Calculating power using ssizeRNA
ssizeRNA genecounts
3.7 years ago by anamaria ▴ 220
0
votes
1
reply
2.0k
views
Comment: C: How to decide which Principal Components are the most correlated with with covar
3.8 years ago by anamaria ▴ 220
0
votes
1
reply
2.0k
views
Comment: C: How to decide which Principal Components are the most correlated with with covar
3.8 years ago by anamaria ▴ 220
1
vote
4
replies
2.0k
views
How to decide which Principal Components are the most correlated with with covariates for plink regression?
covariates principal componets plink regression
updated 3.8 years ago by 87k • written 3.8 years ago by ▴ 220
0
votes
1
reply
27k
views
Comment: C: Produce PCA bi-plot for 1000 Genomes Phase III in VCF format (old)
3.8 years ago by anamaria ▴ 220
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