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1
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0
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11k
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Comment: C: pulling snps from vcf file using ids
6.4 years ago by RNAseqer ▴ 280
0
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0
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2.9k
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Comment: C: No Sensitivity/Accuracy output from gffcompare, what am I doing wrong?
6.4 years ago by RNAseqer ▴ 280
0
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0
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1.2k
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Comment: C: minimum snp number from set in LD
6.5 years ago by RNAseqer ▴ 280
0
votes
2
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1.2k
views
minimum snp number from set in LD
snps ld minimum snp number
updated 6.5 years ago by ★ 1.4k • written 6.5 years ago by ▴ 280
15
votes
2
replies
11k
views
pulling snps from vcf file using ids
vcf ids snps
updated 6.5 years ago by 89k • written 6.5 years ago by ▴ 280
1
vote
1
reply
2.2k
views
Default Plink Window size?
plink window SNP
updated 6.5 years ago by 89k • written 6.5 years ago by ▴ 280
0
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0
replies
4.1k
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Comment: C: Interpreting plink snp tagging output
6.5 years ago by RNAseqer ▴ 280
0
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1
reply
4.1k
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Comment: C: Interpreting plink snp tagging output
6.5 years ago by RNAseqer ▴ 280
2
votes
3
replies
2.2k
views
Plink recode option to get genomic position?
plink SNP locus
updated 6.5 years ago by 12k • written 6.5 years ago by ▴ 280
0
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0
replies
2.2k
views
Comment: C: Plink recode option to get genomic position?
6.5 years ago by RNAseqer ▴ 280
0
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1
reply
4.1k
views
Comment: C: Interpreting plink snp tagging output
6.5 years ago by RNAseqer ▴ 280
0
votes
1
reply
4.1k
views
Comment: C: Interpreting plink snp tagging output
6.5 years ago by RNAseqer ▴ 280
0
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1
reply
4.1k
views
Comment: C: Interpreting plink snp tagging output
6.5 years ago by RNAseqer ▴ 280
8
votes
10
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4.1k
views
Interpreting plink snp tagging output
plink SNP
updated 6.5 years ago by 11k • written 6.5 years ago by ▴ 280
0
votes
0
replies
6.3k
views
Comment: C: Filtering SNPS by minimum LD value in bcftools?
6.5 years ago by RNAseqer ▴ 280
3
votes
2
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6.3k
views
Filtering SNPS by minimum LD value in bcftools?
bcftools vcftools vcf LD r2
6.5 years ago by RNAseqer ▴ 280
1
vote
0
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6.1k
views
Comment: C: rowVars function, used in ballgown analysis not available for R 3.5.2, alternati
6.5 years ago by RNAseqer ▴ 280
12
votes
5
replies
6.1k
views
rowVars function, used in ballgown analysis not available for R 3.5.2, alternatives?
R rna-seq ballgown rowVars
updated 6.5 years ago by ★ 4.2k • written 6.5 years ago by ▴ 280
0
votes
1
reply
6.1k
views
Comment: C: rowVars function, used in ballgown analysis not available for R 3.5.2, alternati
6.5 years ago by RNAseqer ▴ 280
0
votes
0
replies
3.3k
views
Comment: C: ballgown error: Error in file(file, "rt") : invalid 'description' argument Calls
6.5 years ago by RNAseqer ▴ 280
0
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1
reply
3.3k
views
Comment: C: ballgown error: Error in file(file, "rt") : invalid 'description' argument Calls
6.6 years ago by RNAseqer ▴ 280
0
votes
4
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3.3k
views
ballgown error: Error in file(file, "rt") : invalid 'description' argument Calls: ballgown -> read.table -> file
ballgown RNA-Seq stringtie
6.6 years ago by RNAseqer ▴ 280
0
votes
2
replies
2.9k
views
No Sensitivity/Accuracy output from gffcompare, what am I doing wrong?
gffcompare .stats. accuracy precision
6.6 years ago by RNAseqer ▴ 280
1
vote
1
reply
1.8k
views
Can HISAT2 be invoked in bash shell, and can it be fed variables or names with wildcards as inputs?
Bash Shell HISAT2
updated 2.3 years ago by 45k • written 6.6 years ago by ▴ 280
0
votes
0
replies
3.4k
views
Comment: C: samtools sam-to-bam conversion => bamfile RSeQC tool bam_stats.py cannot use. Va
6.6 years ago by RNAseqer ▴ 280
0
votes
0
replies
3.4k
views
Comment: C: samtools sam-to-bam conversion => bamfile RSeQC tool bam_stats.py cannot use. Va
6.6 years ago by RNAseqer ▴ 280
0
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0
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6.7k
views
Comment: C: how to get Homo_sapiens.GRCh38.84.bed file
6.6 years ago by RNAseqer ▴ 280
2
votes
7
replies
3.4k
views
samtools sam-to-bam conversion => bamfile RSeQC tool bam_stats.py cannot use. ValueError: file has no sequences defined (mode='rb')
samtools bam RSeQC bam_stats.py (mode='rb')
updated 6.6 years ago by 48k • written 6.6 years ago by ▴ 280
0
votes
1
reply
3.4k
views
Comment: C: samtools sam-to-bam conversion => bamfile RSeQC tool bam_stats.py cannot use. Va
6.6 years ago by RNAseqer ▴ 280
0
votes
1
reply
6.7k
views
Comment: C: how to get Homo_sapiens.GRCh38.84.bed file
6.6 years ago by RNAseqer ▴ 280
0
votes
0
replies
3.8k
views
Comment: C: Hisat2 -Can it align paired readfiles, and unpaired read files leftover from tri
6.6 years ago by RNAseqer ▴ 280
0
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0
replies
3.8k
views
Comment: C: Hisat2 -Can it align paired readfiles, and unpaired read files leftover from tri
6.6 years ago by RNAseqer ▴ 280
0
votes
4
replies
3.8k
views
Hisat2 -Can it align paired readfiles, and unpaired read files leftover from trimming/QC simultaneously?
rna-seq alignment HISAT2 Paired end
updated 6.6 years ago by 35k • written 6.6 years ago by ▴ 280
133 results • Page 3 of 3
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