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Comment: Comment: Is there any tutorial page that tells you how to extract read count from illumin
3.3 years ago by Simon Ahn ▴ 10
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Is there any tutorial page that tells you how to extract read count from illumina single-cell RNAseq fastq file?
illumina scRNA-seq
3.3 years ago by Simon Ahn ▴ 10
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Comment: Comment: Is there any way to make p-value high if correlation has negative value?
3.7 years ago by Simon Ahn ▴ 10
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2
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897
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Is there any way to make p-value high if correlation has negative value?
correlation p-value
3.7 years ago by Simon Ahn ▴ 10
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0
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599
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What does it mean by "fitted to a normal distribution and a threshold of p < 0.001"?
normal statstic distribution
3.8 years ago by Simon Ahn ▴ 10
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Comment: Comment: How to get DEGs compare one sample to another?
3.8 years ago by Simon Ahn ▴ 10
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1.5k
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How to get DEGs compare one sample to another?
DESeq2 DEG
updated 3.8 years ago by ▴ 810 • written 3.8 years ago by ▴ 10
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Questions on Seurat AddModuleScore function
AddModuleScore Seurat single-cell
3.8 years ago by Simon Ahn ▴ 10
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521
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How should I normalize read count without any metadata or reading depth?
single-cell normalization
3.8 years ago by Simon Ahn ▴ 10
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2
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1.4k
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How should I deal with my RNAseq result with high % of mutiple aligned reads?
RNAseq raw-count fastq
updated 3.9 years ago by 9.0k • written 3.9 years ago by ▴ 10
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Comment: Comment: How to deal with high % of reads mapped to multiple loci on STAR?
3.9 years ago by Simon Ahn ▴ 10
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1.9k
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How to deal with high % of reads mapped to multiple loci on STAR?
RNAseq fastq raw-count
3.9 years ago by Simon Ahn ▴ 10
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1.3k
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Comment: Comment: Using dgelist function in EdgeR to calculate RPKM
3.9 years ago by Simon Ahn ▴ 10
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Comment: Comment: Running DEseq2 on galaxy having error for invalid row.names length
3.9 years ago by Simon Ahn ▴ 10
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Comment: Comment: Low assigned alignments
3.9 years ago by Simon Ahn ▴ 10
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How should I align my single-end fastq file?
RNAseq raw-count fastq
updated 3.9 years ago by ▴ 80 • written 3.9 years ago by ▴ 10
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5
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1.7k
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Low assigned alignments
fastq-alignment RNAseq raw-count
3.9 years ago by Simon Ahn ▴ 10
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1.7k
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Comment: Comment: Low assigned alignments
3.9 years ago by Simon Ahn ▴ 10
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1.7k
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Comment: Comment: Paired-end reads somehow counted twice?
3.9 years ago by Simon Ahn ▴ 10
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3
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1.7k
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Paired-end reads somehow counted twice?
RNAseq raw-count fastq
updated 3.9 years ago by 153k • written 3.9 years ago by ▴ 10
2
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2
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1.4k
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bowtie2 and then HISAT2? What does it mean in Data processing details on a paper?
RNAseq fastq raw-count
updated 3.9 years ago by ▴ 420 • written 3.9 years ago by ▴ 10
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Comment: Comment: I'm not sure my Bulk RNAseq read counts extracted from fastq file are correct
3.9 years ago by Simon Ahn ▴ 10
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5
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2.0k
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I'm not sure my Bulk RNAseq read counts extracted from fastq file are correct
fastq RNAseq raw-count
updated 3.9 years ago by 21k • written 3.9 years ago by ▴ 10
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630
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How can I be sure that raw read counts are well processed from fastq files?
fastq RNAseq raw-count
3.9 years ago by Simon Ahn ▴ 10
2
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1
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1.2k
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Making a Group Tree using RNA-seq Read Count in R
R RNA-Seq
updated 2.2 years ago by 45k • written 6.4 years ago by ▴ 10
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