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questions
2
votes
2
replies
695
views
Is there any tutorial page that tells you how to extract read count from illumina single-cell RNAseq fastq file?
illumina
scRNA-seq
23 months ago by
Simon Ahn
▴ 10
2
votes
2
replies
557
views
Is there any way to make p-value high if correlation has negative value?
correlation
p-value
2.4 years ago by
Simon Ahn
▴ 10
0
votes
0
replies
397
views
What does it mean by "fitted to a normal distribution and a threshold of p < 0.001"?
normal
statstic
distribution
2.5 years ago by
Simon Ahn
▴ 10
0
votes
4
replies
972
views
How to get DEGs compare one sample to another?
DESeq2
DEG
updated 2.5 years ago by
Marco Pannone
▴ 790 • written 2.5 years ago by
Simon Ahn
▴ 10
1
vote
0
replies
919
views
Questions on Seurat AddModuleScore function
AddModuleScore
Seurat
single-cell
2.5 years ago by
Simon Ahn
▴ 10
0
votes
0
replies
390
views
How should I normalize read count without any metadata or reading depth?
single-cell
normalization
2.5 years ago by
Simon Ahn
▴ 10
3
votes
2
replies
912
views
How should I deal with my RNAseq result with high % of mutiple aligned reads?
RNAseq
raw-count
fastq
updated 2.5 years ago by
Carlo Yague
8.7k • written 2.5 years ago by
Simon Ahn
▴ 10
0
votes
2
replies
1.4k
views
How to deal with high % of reads mapped to multiple loci on STAR?
RNAseq
fastq
raw-count
2.5 years ago by
Simon Ahn
▴ 10
4
votes
2
replies
928
views
How should I align my single-end fastq file?
RNAseq
raw-count
fastq
updated 2.5 years ago by
KoppesEA
▴ 80 • written 2.5 years ago by
Simon Ahn
▴ 10
1
vote
5
replies
1.2k
views
Low assigned alignments
fastq-alignment
RNAseq
raw-count
2.5 years ago by
Simon Ahn
▴ 10
3
votes
3
replies
1.2k
views
Paired-end reads somehow counted twice?
RNAseq
raw-count
fastq
updated 2.5 years ago by
GenoMax
142k • written 2.5 years ago by
Simon Ahn
▴ 10
2
votes
2
replies
954
views
bowtie2 and then HISAT2? What does it mean in Data processing details on a paper?
RNAseq
fastq
raw-count
updated 2.5 years ago by
Chris Dean
▴ 390 • written 2.5 years ago by
Simon Ahn
▴ 10
6
votes
5
replies
1.2k
views
I'm not sure my Bulk RNAseq read counts extracted from fastq file are correct
fastq
RNAseq
raw-count
updated 2.5 years ago by
cpad0112
21k • written 2.5 years ago by
Simon Ahn
▴ 10
0
votes
0
replies
478
views
How can I be sure that raw read counts are well processed from fastq files?
fastq
RNAseq
raw-count
2.6 years ago by
Simon Ahn
▴ 10
2
votes
1
reply
937
views
Making a Group Tree using RNA-seq Read Count in R
R
RNA-Seq
updated 10 months ago by
Ram
43k • written 5.0 years ago by
Simon Ahn
▴ 10
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