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What are the disadvantages of increasing the sequencing depth of RNA-seq experiment?
NGS RNA-Seq sequencing depth transcriptome
3.1 years ago by mrj ▴ 170
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Comment: Comment: is quality evaluation of transcriptome assembly still required if my workflow is
3.1 years ago by mrj ▴ 170
2
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2
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1.8k
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is quality evaluation of transcriptome assembly still required if my workflow is (good quality reads (fastp) -> bowtie2 alignment to reference genome…
RNA-seq transcriptome
updated 3.1 years ago by 141k • written 3.1 years ago by ▴ 170
1
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829
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Is genome coverage same as k-mer coverage for that genome?
genome coverage k-mer coverage
3.8 years ago by mrj ▴ 170
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1.0k
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Comment: C: reorder contigs into scaffold?
3.8 years ago by mrj ▴ 170
2
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2
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1.0k
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reorder contigs into scaffold?
contig scaffold Assembly
updated 3.8 years ago by ▴ 230 • written 3.8 years ago by ▴ 170
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1
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834
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How to interpret a contig statistics table?
Assembly WGS N50 contigs Soapdenovo2
3.8 years ago by mrj ▴ 170
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0
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1.6k
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Comment: C: How to blastn a very short query sequence? Identifying telomeres in assembly
4.2 years ago by mrj ▴ 170
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1.6k
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Comment: C: How to blastn a very short query sequence? Identifying telomeres in assembly
4.2 years ago by mrj ▴ 170
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1.6k
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Comment: C: How to blastn a very short query sequence? Identifying telomeres in assembly
4.2 years ago by mrj ▴ 170
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0
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1.6k
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Comment: C: How to blastn a very short query sequence? Identifying telomeres in assembly
4.2 years ago by mrj ▴ 170
0
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0
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803
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Comment: C: How to detect different chromosomes from whole genome NGS reads of a fungi?
4.2 years ago by mrj ▴ 170
1
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2
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803
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How to detect different chromosomes from whole genome NGS reads of a fungi?
NGS scaffolds Assembly genome alignment
updated 4.2 years ago by ★ 3.8k • written 4.2 years ago by ▴ 170
4
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11
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1.6k
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How to blastn a very short query sequence? Identifying telomeres in assembly
blastn blast shortquery telomere
updated 4.2 years ago by ▴ 20 • written 4.2 years ago by ▴ 170
5
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6
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1.3k
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How to get a list of snp associated with any known cancer from NCBI with chromosomal locations?
SNP Cancer NCBI circos circularGenome
updated 4.3 years ago by ★ 1.2k • written 4.5 years ago by ▴ 170
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2
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1.9k
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What are Metatranscriptomics databases?
metatranscriptomics metagenomics databases
updated 4.4 years ago by 3.6k • written 4.4 years ago by ▴ 170
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1.3k
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Comment: C: How to get a list of snp associated with any known cancer from NCBI with chromos
4.5 years ago by mrj ▴ 170
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2.0k
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Comment: C: How do I extract out ITS region from assembled whole genome sequence of a fungi?
5.0 years ago by mrj ▴ 170
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