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0
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0
replies
3.9k
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Comment: C: filtering structural variants from normal-tumor pairs (whole-genome sequencing)
8.6 years ago by Bogdan ★ 1.4k
10
votes
6
replies
3.2k
views
somatic variant calling with no germline sample
SNP indel somatic mutation
updated 8.6 years ago by ★ 3.0k • written 8.6 years ago by ★ 1.4k
9
votes
2
replies
3.9k
views
filtering structural variants from normal-tumor pairs (whole-genome sequencing)
SV LUMPY DELLY MANTA filtering
updated 8.6 years ago by ★ 3.0k • written 8.6 years ago by ★ 1.4k
0
votes
0
replies
3.2k
views
Comment: A: somatic variant calling with no germline sample
8.6 years ago by Bogdan ★ 1.4k
1
vote
1
reply
1.6k
views
bias correction (an example from ChIP-seq)
ChIP-Seq bias correction
8.6 years ago by Bogdan ★ 1.4k
0
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0
replies
3.1k
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Comment: C: extracting the genes associated with the clusters
8.7 years ago by Bogdan ★ 1.4k
0
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0
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6.5k
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Comment: C: estimating tumor purity and ploidy and CNV
8.7 years ago by Bogdan ★ 1.4k
0
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1
reply
6.5k
views
Comment: C: estimating tumor purity and ploidy and CNV
8.7 years ago by Bogdan ★ 1.4k
0
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1
reply
6.5k
views
Comment: C: estimating tumor purity and ploidy and CNV
8.7 years ago by Bogdan ★ 1.4k
5
votes
8
replies
6.5k
views
estimating tumor purity and ploidy and CNV
purity ploidy CNV
updated 8.7 years ago by ★ 2.9k • written 8.7 years ago by ★ 1.4k
0
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1
reply
3.0k
views
Comment: C: statistical tests to show the specificity of a phenomenon (eg increase in H3K27m
8.7 years ago by Bogdan ★ 1.4k
0
votes
0
replies
3.0k
views
Comment: C: statistical tests to show the specificity of a phenomenon (eg increase in H3K27m
8.7 years ago by Bogdan ★ 1.4k
0
votes
1
reply
3.0k
views
Comment: C: statistical tests to show the specificity of a phenomenon (eg increase in H3K27m
8.7 years ago by Bogdan ★ 1.4k
0
votes
2
replies
3.0k
views
Answer: A: statistical tests to show the specificity of a phenomenon (eg increase in H3K27m
8.7 years ago by Bogdan ★ 1.4k
9
votes
12
replies
3.0k
views
statistical tests to show the specificity of a phenomenon (eg increase in H3K27me3 mark)
chip-seq
8.7 years ago by Bogdan ★ 1.4k
0
votes
1
reply
3.0k
views
Answer: A: statistical tests to show the specificity of a phenomenon (eg increase in H3K27m
8.7 years ago by Bogdan ★ 1.4k
3
votes
1
reply
2.7k
views
filtering the structural variants
SV
updated 8.8 years ago by 20k • written 8.8 years ago by ★ 1.4k
0
votes
0
replies
2.2k
views
calling deletions and duplications in the cancer genomes
genome deletion duplication
updated 8.8 years ago by 48k • written 8.8 years ago by ★ 1.4k
0
votes
0
replies
2.5k
views
Comment: C: about computer memory and mpileup files
9.1 years ago by Bogdan ★ 1.4k
3
votes
4
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2.5k
views
about computer memory and mpileup files
SNP memory varscan2
updated 9.1 years ago by 4.1k • written 9.1 years ago by ★ 1.4k
0
votes
0
replies
2.5k
views
Comment: C: about computer memory and mpileup files
9.1 years ago by Bogdan ★ 1.4k
8
votes
8
replies
6.2k
views
6 follow
CNV caller software
CNV
updated 9.1 years ago by ▴ 940 • written 9.1 years ago by ★ 1.4k
0
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0
replies
4.2k
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Comment: C: Hi-C analysis and significant interactions
9.1 years ago by Bogdan ★ 1.4k
0
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0
replies
6.2k
views
Comment: C: CNV caller software
9.1 years ago by Bogdan ★ 1.4k
9
votes
6
replies
4.2k
views
6 follow
Hi-C analysis and significant interactions
next-gen
updated 9.1 years ago by ▴ 20 • written 9.1 years ago by ★ 1.4k
0
votes
0
replies
6.2k
views
Answer: A: CNV caller software
9.1 years ago by Bogdan ★ 1.4k
0
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0
replies
3.9k
views
Comment: C: packages for displaying heatmaps of mutations etc ...
9.1 years ago by Bogdan ★ 1.4k
0
votes
0
replies
1.1k
views
about multi-mapped reads and detection of chromosomal alterations
SNP genome
9.1 years ago by Bogdan ★ 1.4k
0
votes
0
replies
4.2k
views
Answer: A: Hi-C analysis and significant interactions
9.1 years ago by Bogdan ★ 1.4k
0
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0
replies
4.0k
views
Comment: C: annotating a vcf file containing Structural Variants
9.1 years ago by Bogdan ★ 1.4k
1
vote
2
replies
2.4k
views
about translocations in the cancer genomes
SNP
9.1 years ago by Bogdan ★ 1.4k
0
votes
1
reply
4.0k
views
Comment: C: annotating a vcf file containing Structural Variants
9.2 years ago by Bogdan ★ 1.4k
3
votes
5
replies
4.0k
views
annotating a vcf file containing Structural Variants
SNP snp gene
updated 9.2 years ago by 13k • written 9.2 years ago by ★ 1.4k
0
votes
3
replies
1.8k
views
about the genome coordinates for mutations
SNP
9.4 years ago by Bogdan ★ 1.4k
0
votes
0
replies
1.8k
views
Answer: A: about the genome coordinates for mutations
9.4 years ago by Bogdan ★ 1.4k
9
votes
4
replies
1.7k
views
winners in SMC (Somatic Mutation Challenge)
SNP
updated 9.5 years ago by 22k • written 9.7 years ago by ★ 1.4k
1
vote
1
reply
3.4k
views
about GATK VariantAnnotator and VCF files
VCF
updated 9.5 years ago by 27k • written 9.5 years ago by ★ 1.4k
1
vote
0
replies
11k
views
Comment: C: Help identifying TATA boxes
9.5 years ago by Bogdan ★ 1.4k
1
vote
0
replies
4.5k
views
Answer: A: Calculating fold change at enhancers and promoters
9.5 years ago by Bogdan ★ 1.4k
1
vote
1
reply
4.5k
views
Answer: A: Calculating fold change at enhancers and promoters
9.5 years ago by Bogdan ★ 1.4k
0
votes
1
reply
4.5k
views
Comment: C: Calculating fold change at enhancers and promoters
9.5 years ago by Bogdan ★ 1.4k
2
votes
1
reply
4.5k
views
Answer: A: Calculating fold change at enhancers and promoters
9.5 years ago by Bogdan ★ 1.4k
3
votes
0
replies
5.6k
views
Answer: A: How to analyze RIP-seq data
9.5 years ago by Bogdan ★ 1.4k
0
votes
0
replies
1.4k
views
Comment: C: about tools working on VCF and BAM files
9.6 years ago by Bogdan ★ 1.4k
0
votes
0
replies
1.4k
views
Comment: C: about tools working on VCF and BAM files
9.6 years ago by Bogdan ★ 1.4k
1
vote
3
replies
1.4k
views
about tools working on VCF and BAM files
SNP
9.6 years ago by Bogdan ★ 1.4k
0
votes
0
replies
4.5k
views
Comment: C: filtering VCF files
9.6 years ago by Bogdan ★ 1.4k
0
votes
1
reply
6.1k
views
Comment: C: about somatic mutation calling
9.6 years ago by Bogdan ★ 1.4k
7
votes
21
replies
6.1k
views
about somatic mutation calling
SNP genome sequencing snp
updated 9.6 years ago by ▴ 30 • written 9.6 years ago by ★ 1.4k
0
votes
0
replies
4.5k
views
Comment: A: filtering VCF files
9.6 years ago by Bogdan ★ 1.4k
388 results • Page 7 of 8
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