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8
votes
16
replies
5.6k
views
9 follow
visualize CNV data based on WGS
CNV
updated 6 months ago by ▴ 70 • written 6.7 years ago by ★ 1.4k
1
vote
0
replies
381
views
Forum: list of bioinformatics tools in cancer genomics
mutations CNA cancer genomics LOH
updated 7 months ago by 164k • written 7 months ago by ★ 1.4k
0
votes
0
replies
356
views
filtering SNV/INDEL in tumor-only WGS samples
Tumor-only samples
11 months ago by Bogdan ★ 1.4k
0
votes
0
replies
657
views
filtering variants in a Strelka2 VCF file based on AD and AF
Filter VCF
12 months ago by Bogdan ★ 1.4k
0
votes
0
replies
406
views
Copy Number Alteration and Loss or Heterozygosity
LOH CNA copy-number
updated 16 months ago by 44k • written 16 months ago by ★ 1.4k
0
votes
1
reply
990
views
Comment: Comment: fitting a copy number profile to know CNV signatures
17 months ago by Bogdan ★ 1.4k
2
votes
3
replies
990
views
fitting a copy number profile to know CNV signatures
CNV copy number LOH CNA
updated 17 months ago by 4.4k • written 17 months ago by ★ 1.4k
0
votes
0
replies
423
views
allelic copy number variation
LOH CNA CNV copy-number
updated 18 months ago by 44k • written 18 months ago by ★ 1.4k
0
votes
0
replies
430
views
alelle - specific CNA/LOH
cancer CNV genomics LOH CNA
18 months ago by Bogdan ★ 1.4k
0
votes
0
replies
360
views
network alignment and network regression
network
20 months ago by Bogdan ★ 1.4k
1
vote
0
replies
561
views
CNA/LOH caller on WGS data and chromosomal instability index
CNA CNV
21 months ago by Bogdan ★ 1.4k
0
votes
0
replies
627
views
downloading the VCF files of CCLE project (or cancer genomics WGS)
cancer genomics WGS CCLE VCF
22 months ago by Bogdan ★ 1.4k
0
votes
0
replies
448
views
packages to detect chromoanagenesis phenomena in germline or cancer genomes
ShatterProof
22 months ago by Bogdan ★ 1.4k
0
votes
0
replies
8.7k
views
Answer: Answer: How does edgeR do ERCC spike-in normalization?
22 months ago by Bogdan ★ 1.4k
0
votes
0
replies
353
views
clustering of genome segments
cancer genomics epigenetics
22 months ago by Bogdan ★ 1.4k
0
votes
0
replies
866
views
Comment: Comment: wig2bed and counting the reads in the peaks
23 months ago by Bogdan ★ 1.4k
3
votes
2
replies
866
views
wig2bed and counting the reads in the peaks
bedtools ChIP-seq deeptools bedops
updated 15 months ago by 44k • written 23 months ago by ★ 1.4k
2
votes
1
reply
1.3k
views
normalize and compare bigwig files
bigwig
updated 2.0 years ago by 4.9k • written 2.0 years ago by ★ 1.4k
0
votes
1
reply
766
views
calling peaks in ChIP-seq datasets from bedgraph files
ChIP-seq MACS2
updated 2.0 years ago by ▴ 810 • written 2.0 years ago by ★ 1.4k
0
votes
1
reply
2.2k
views
Comment: Comment: paired-end reads, idxstats, and samtools and grep
2.1 years ago by Bogdan ★ 1.4k
0
votes
0
replies
2.2k
views
Comment: Comment: paired-end reads, idxstats, and samtools and grep
2.1 years ago by Bogdan ★ 1.4k
0
votes
1
reply
2.2k
views
Comment: Comment: paired-end reads, idxstats, and samtools and grep
2.1 years ago by Bogdan ★ 1.4k
0
votes
2
replies
2.2k
views
Comment: Comment: paired-end reads, idxstats, and samtools and grep
2.1 years ago by Bogdan ★ 1.4k
0
votes
11
replies
2.2k
views
paired-end reads, idxstats, and samtools and grep
samtools
updated 2.0 years ago by 4.4k • written 2.1 years ago by ★ 1.4k
0
votes
1
reply
2.2k
views
Comment: Comment: paired-end reads, idxstats, and samtools and grep
2.1 years ago by Bogdan ★ 1.4k
0
votes
0
replies
2.2k
views
Comment: Comment: converting bedgraph to bigwig by not using ucsc tools
2.1 years ago by Bogdan ★ 1.4k
0
votes
1
reply
2.2k
views
Comment: Comment: converting bedgraph to bigwig by not using ucsc tools
2.1 years ago by Bogdan ★ 1.4k
5
votes
8
replies
2.2k
views
converting bedgraph to bigwig by not using ucsc tools
bedgraph bigwig
2.1 years ago by Bogdan ★ 1.4k
0
votes
1
reply
2.2k
views
Answer: Answer: converting bedgraph to bigwig by not using ucsc tools
2.1 years ago by Bogdan ★ 1.4k
0
votes
0
replies
1.1k
views
Comment: Comment: CWL and Arvados
2.1 years ago by Bogdan ★ 1.4k
3
votes
3
replies
1.1k
views
CWL and Arvados
CWL workflow manager
2.1 years ago by Bogdan ★ 1.4k
0
votes
1
reply
720
views
SNV, CNA, SV
SV CNA SNV
updated 2.1 years ago by 4.4k • written 2.1 years ago by ★ 1.4k
2
votes
1
reply
520
views
extracting sequences from a bam file
bam
updated 2.2 years ago by 4.3k • written 2.2 years ago by ★ 1.4k
1
vote
3
replies
1.2k
views
comparisons between 2 ChIP-seq datasets
ChIP-seq
updated 2.4 years ago by 84k • written 2.4 years ago by ★ 1.4k
0
votes
0
replies
1.2k
views
Comment: Comment: comparisons between 2 ChIP-seq datasets
2.4 years ago by Bogdan ★ 1.4k
4
votes
3
replies
1.6k
views
computing chromothripsis on cancer genomes
snp cnv sv cancer
updated 2.4 years ago by ▴ 340 • written 6.2 years ago by ★ 1.4k
0
votes
0
replies
1.7k
views
Comment: Comment: saving png images and X11
2.4 years ago by Bogdan ★ 1.4k
0
votes
2
replies
678
views
browser to visualize single cell data
scATAC-seq
updated 2.4 years ago by 15k • written 2.4 years ago by ★ 1.4k
0
votes
0
replies
390
views
HIC databases
Hi-C
2.5 years ago by Bogdan ★ 1.4k
2
votes
1
reply
698
views
scATAC-seq
scATAC-seq
2.5 years ago by Bogdan ★ 1.4k
2
votes
0
replies
698
views
Answer: Answer: scATAC-seq
2.5 years ago by Bogdan ★ 1.4k
0
votes
0
replies
467
views
ssvQC
ssvQC
2.6 years ago by Bogdan ★ 1.4k
0
votes
0
replies
1.7k
views
Comment: Comment: saving png images and X11
2.6 years ago by Bogdan ★ 1.4k
0
votes
5
replies
1.7k
views
saving png images and X11
scripting saving images and
2.4 years ago by Bogdan ★ 1.4k
0
votes
1
reply
634
views
HOMER on AWS
HOMER
updated 5 months ago by ▴ 10 • written 2.6 years ago by ★ 1.4k
0
votes
1
reply
720
views
compare the background levels in two chip-seq experiments
ChIPseq
updated 2.6 years ago by 11k • written 2.6 years ago by ★ 1.4k
0
votes
0
replies
687
views
Comment: Comment: interchromosomal interactions and 4C
2.7 years ago by Bogdan ★ 1.4k
0
votes
2
replies
687
views
interchromosomal interactions and 4C
4C
2.7 years ago by Bogdan ★ 1.4k
0
votes
0
replies
949
views
Comment: Comment: compare ChIP-seq datasets in two cell lines
2.7 years ago by Bogdan ★ 1.4k
0
votes
1
reply
949
views
Comment: Comment: compare ChIP-seq datasets in two cell lines
2.7 years ago by Bogdan ★ 1.4k
386 results • Page 1 of 8
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