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0
votes
1
reply
470
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Comment:
Comment: fitting a copy number profile to know CNV signatures
27 days ago by
Bogdan
★ 1.3k
2
votes
3
replies
470
views
fitting a copy number profile to know CNV signatures
CNV
copy
number
LOH
CNA
updated 26 days ago by
Vincent Laufer
★ 2.8k • written 6 weeks ago by
Bogdan
★ 1.3k
0
votes
0
replies
154
views
allelic copy number variation
LOH
CNA
CNV
copy-number
updated 7 weeks ago by
Ram
39k • written 7 weeks ago by
Bogdan
★ 1.3k
0
votes
0
replies
181
views
alelle - specific CNA/LOH
cancer
CNV
genomics
LOH
CNA
8 weeks ago by
Bogdan
★ 1.3k
0
votes
0
replies
168
views
network alignment and network regression
network
3 months ago by
Bogdan
★ 1.3k
1
vote
0
replies
352
views
CNA/LOH caller on WGS data and chromosomal instability index
CNA
CNV
5 months ago by
Bogdan
★ 1.3k
0
votes
0
replies
311
views
downloading the VCF files of CCLE project (or cancer genomics WGS)
cancer
genomics
WGS
CCLE
VCF
5 months ago by
Bogdan
★ 1.3k
0
votes
0
replies
224
views
packages to detect chromoanagenesis phenomena in germline or cancer genomes
ShatterProof
5 months ago by
Bogdan
★ 1.3k
0
votes
0
replies
7.2k
views
Answer:
Answer: How does edgeR do ERCC spike-in normalization?
6 months ago by
Bogdan
★ 1.3k
0
votes
0
replies
143
views
clustering of genome segments
cancer
genomics
epigenetics
6 months ago by
Bogdan
★ 1.3k
0
votes
0
replies
416
views
Comment:
Comment: wig2bed and counting the reads in the peaks
7 months ago by
Bogdan
★ 1.3k
3
votes
2
replies
416
views
wig2bed and counting the reads in the peaks
ChIP-seq
deeptools
bedops
bedtools
7 months ago by
Bogdan
★ 1.3k
2
votes
1
reply
455
views
normalize and compare bigwig files
bigwig
updated 7 months ago by
Matthias Zepper
3.7k • written 7 months ago by
Bogdan
★ 1.3k
0
votes
1
reply
372
views
calling peaks in ChIP-seq datasets from bedgraph files
ChIP-seq
MACS2
updated 8 months ago by
Marco Pannone
▴ 730 • written 8 months ago by
Bogdan
★ 1.3k
0
votes
1
reply
1.2k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
8 months ago by
Bogdan
★ 1.3k
0
votes
0
replies
1.2k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
8 months ago by
Bogdan
★ 1.3k
0
votes
1
reply
1.2k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
8 months ago by
Bogdan
★ 1.3k
0
votes
2
replies
1.2k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
9 months ago by
Bogdan
★ 1.3k
0
votes
11
replies
1.2k
views
paired-end reads, idxstats, and samtools and grep
samtools
updated 8 months ago by
Vincent Laufer
★ 2.8k • written 9 months ago by
Bogdan
★ 1.3k
0
votes
1
reply
1.2k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
9 months ago by
Bogdan
★ 1.3k
0
votes
0
replies
1.0k
views
Comment:
Comment: converting bedgraph to bigwig by not using ucsc tools
9 months ago by
Bogdan
★ 1.3k
0
votes
1
reply
1.0k
views
Comment:
Comment: converting bedgraph to bigwig by not using ucsc tools
9 months ago by
Bogdan
★ 1.3k
5
votes
8
replies
1.0k
views
converting bedgraph to bigwig by not using ucsc tools
bedgraph
bigwig
9 months ago by
Bogdan
★ 1.3k
0
votes
1
reply
1.0k
views
Answer:
Answer: converting bedgraph to bigwig by not using ucsc tools
9 months ago by
Bogdan
★ 1.3k
0
votes
0
replies
655
views
Comment:
Comment: CWL and Arvados
9 months ago by
Bogdan
★ 1.3k
3
votes
3
replies
655
views
CWL and Arvados
CWL
workflow
manager
9 months ago by
Bogdan
★ 1.3k
0
votes
1
reply
423
views
SNV, CNA, SV
SV
CNA
SNV
updated 9 months ago by
Vincent Laufer
★ 2.8k • written 9 months ago by
Bogdan
★ 1.3k
2
votes
1
reply
295
views
extracting sequences from a bam file
bam
updated 9 months ago by
LChart
2.6k • written 9 months ago by
Bogdan
★ 1.3k
1
vote
3
replies
734
views
comparisons between 2 ChIP-seq datasets
ChIP-seq
updated 12 months ago by
ATpoint
72k • written 12 months ago by
Bogdan
★ 1.3k
0
votes
0
replies
734
views
Comment:
Comment: comparisons between 2 ChIP-seq datasets
12 months ago by
Bogdan
★ 1.3k
4
votes
3
replies
1.2k
views
computing chromothripsis on cancer genomes
snp
cnv
sv
cancer
updated 12 months ago by
Thind amarinder
▴ 310 • written 4.8 years ago by
Bogdan
★ 1.3k
0
votes
0
replies
906
views
Comment:
Comment: saving png images and X11
12 months ago by
Bogdan
★ 1.3k
0
votes
2
replies
401
views
browser to visualize single cell data
scATAC-seq
updated 12 months ago by
lieven.sterck
14k • written 12 months ago by
Bogdan
★ 1.3k
0
votes
0
replies
193
views
HIC databases
Hi-C
13 months ago by
Bogdan
★ 1.3k
2
votes
1
reply
397
views
scATAC-seq
scATAC-seq
14 months ago by
Bogdan
★ 1.3k
2
votes
0
replies
397
views
Answer:
Answer: scATAC-seq
14 months ago by
Bogdan
★ 1.3k
0
votes
0
replies
270
views
ssvQC
ssvQC
15 months ago by
Bogdan
★ 1.3k
0
votes
0
replies
266
views
Multiomics analysis
scATAC-seq
scRNA-seq
15 months ago by
Bogdan
★ 1.3k
0
votes
0
replies
906
views
Comment:
Comment: saving png images and X11
15 months ago by
Bogdan
★ 1.3k
0
votes
5
replies
906
views
saving png images and X11
scripting
saving
images
and
12 months ago by
Bogdan
★ 1.3k
0
votes
0
replies
325
views
HOMER on AWS
HOMER
15 months ago by
Bogdan
★ 1.3k
0
votes
1
reply
485
views
compare the background levels in two chip-seq experiments
ChIPseq
updated 15 months ago by
seidel
11k • written 15 months ago by
Bogdan
★ 1.3k
0
votes
0
replies
405
views
Comment:
Comment: interchromosomal interactions and 4C
15 months ago by
Bogdan
★ 1.3k
0
votes
2
replies
405
views
interchromosomal interactions and 4C
4C
15 months ago by
Bogdan
★ 1.3k
0
votes
0
replies
564
views
Comment:
Comment: compare ChIP-seq datasets in two cell lines
15 months ago by
Bogdan
★ 1.3k
0
votes
1
reply
564
views
Comment:
Comment: compare ChIP-seq datasets in two cell lines
15 months ago by
Bogdan
★ 1.3k
1
vote
4
replies
564
views
compare ChIP-seq datasets in two cell lines
ChIP-seq
15 months ago by
Bogdan
★ 1.3k
19
votes
10
replies
10k
views
7 follow
workflow management system : WDL, CWL, Ruffus, SnakeMake, etc
pipeline
language
updated 13 months ago by
dariober
14k • written 4.6 years ago by
Bogdan
★ 1.3k
0
votes
1
reply
481
views
4C packages
4C
updated 16 months ago by
Vincent Laufer
★ 2.8k • written 16 months ago by
Bogdan
★ 1.3k
5
votes
4
replies
1.4k
views
6 follow
bioinformatics pipelines on GCP or AWS
RNA-seq
google
ChIP-seq
cloud
updated 14 months ago by
Vincent Laufer
★ 2.8k • written 20 months ago by
Bogdan
★ 1.3k
383 results • Page
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