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Comment: Comment: bioinformatics tutorial on Oxford Nanopore Technologies
3 months ago by Bogdan ★ 1.4k
1
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4
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633
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bioinformatics tutorial on Oxford Nanopore Technologies
oxford nanopore
updated 3 months ago by 151k • written 4 months ago by ★ 1.4k
8
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16
replies
6.2k
views
9 follow
visualize CNV data based on WGS
CNV
updated 14 months ago by ▴ 70 • written 7.3 years ago by ★ 1.4k
1
vote
0
replies
501
views
Forum: list of bioinformatics tools in cancer genomics
mutations CNA cancer genomics LOH
updated 15 months ago by 166k • written 15 months ago by ★ 1.4k
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0
replies
459
views
filtering SNV/INDEL in tumor-only WGS samples
Tumor-only samples
18 months ago by Bogdan ★ 1.4k
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0
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917
views
filtering variants in a Strelka2 VCF file based on AD and AF
Filter VCF
20 months ago by Bogdan ★ 1.4k
0
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0
replies
517
views
Copy Number Alteration and Loss or Heterozygosity
LOH CNA copy-number
updated 23 months ago by 45k • written 23 months ago by ★ 1.4k
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1
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1.3k
views
Comment: Comment: fitting a copy number profile to know CNV signatures
2.0 years ago by Bogdan ★ 1.4k
2
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3
replies
1.3k
views
fitting a copy number profile to know CNV signatures
CNV copy number LOH CNA
updated 2.0 years ago by 4.7k • written 2.1 years ago by ★ 1.4k
0
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0
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561
views
allelic copy number variation
LOH CNA CNV copy-number
updated 2.1 years ago by 45k • written 2.1 years ago by ★ 1.4k
0
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0
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557
views
alelle - specific CNA/LOH
cancer CNV genomics LOH CNA
2.1 years ago by Bogdan ★ 1.4k
0
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0
replies
451
views
network alignment and network regression
network
2.3 years ago by Bogdan ★ 1.4k
1
vote
0
replies
668
views
CNA/LOH caller on WGS data and chromosomal instability index
CNA CNV
2.4 years ago by Bogdan ★ 1.4k
0
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0
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810
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downloading the VCF files of CCLE project (or cancer genomics WGS)
cancer genomics WGS CCLE VCF
2.4 years ago by Bogdan ★ 1.4k
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0
replies
528
views
packages to detect chromoanagenesis phenomena in germline or cancer genomes
ShatterProof
2.4 years ago by Bogdan ★ 1.4k
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0
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9.5k
views
Answer: Answer: How does edgeR do ERCC spike-in normalization?
2.5 years ago by Bogdan ★ 1.4k
0
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0
replies
447
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clustering of genome segments
cancer genomics epigenetics
2.5 years ago by Bogdan ★ 1.4k
0
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0
replies
1.1k
views
Comment: Comment: wig2bed and counting the reads in the peaks
2.6 years ago by Bogdan ★ 1.4k
3
votes
2
replies
1.1k
views
wig2bed and counting the reads in the peaks
bedtools ChIP-seq deeptools bedops
updated 23 months ago by 45k • written 2.6 years ago by ★ 1.4k
2
votes
1
reply
1.7k
views
normalize and compare bigwig files
bigwig
updated 2.6 years ago by 5.1k • written 2.6 years ago by ★ 1.4k
0
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1
reply
962
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calling peaks in ChIP-seq datasets from bedgraph files
ChIP-seq MACS2
updated 2.6 years ago by ▴ 810 • written 2.6 years ago by ★ 1.4k
0
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1
reply
2.7k
views
Comment: Comment: paired-end reads, idxstats, and samtools and grep
2.7 years ago by Bogdan ★ 1.4k
0
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0
replies
2.7k
views
Comment: Comment: paired-end reads, idxstats, and samtools and grep
2.7 years ago by Bogdan ★ 1.4k
0
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1
reply
2.7k
views
Comment: Comment: paired-end reads, idxstats, and samtools and grep
2.7 years ago by Bogdan ★ 1.4k
0
votes
2
replies
2.7k
views
Comment: Comment: paired-end reads, idxstats, and samtools and grep
2.7 years ago by Bogdan ★ 1.4k
0
votes
11
replies
2.7k
views
paired-end reads, idxstats, and samtools and grep
samtools
updated 2.6 years ago by 4.7k • written 2.7 years ago by ★ 1.4k
0
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1
reply
2.7k
views
Comment: Comment: paired-end reads, idxstats, and samtools and grep
2.7 years ago by Bogdan ★ 1.4k
0
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0
replies
2.8k
views
Comment: Comment: converting bedgraph to bigwig by not using ucsc tools
2.7 years ago by Bogdan ★ 1.4k
0
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1
reply
2.8k
views
Comment: Comment: converting bedgraph to bigwig by not using ucsc tools
2.7 years ago by Bogdan ★ 1.4k
5
votes
8
replies
2.8k
views
converting bedgraph to bigwig by not using ucsc tools
bedgraph bigwig
2.7 years ago by Bogdan ★ 1.4k
0
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1
reply
2.8k
views
Answer: Answer: converting bedgraph to bigwig by not using ucsc tools
2.7 years ago by Bogdan ★ 1.4k
0
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0
replies
1.4k
views
Comment: Comment: CWL and Arvados
2.7 years ago by Bogdan ★ 1.4k
3
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3
replies
1.4k
views
CWL and Arvados
CWL workflow manager
2.7 years ago by Bogdan ★ 1.4k
0
votes
1
reply
886
views
SNV, CNA, SV
SV CNA SNV
updated 2.8 years ago by 4.7k • written 2.8 years ago by ★ 1.4k
2
votes
1
reply
628
views
extracting sequences from a bam file
bam
updated 2.8 years ago by 4.9k • written 2.8 years ago by ★ 1.4k
1
vote
3
replies
1.5k
views
comparisons between 2 ChIP-seq datasets
ChIP-seq
updated 3.0 years ago by 88k • written 3.0 years ago by ★ 1.4k
0
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0
replies
1.5k
views
Comment: Comment: comparisons between 2 ChIP-seq datasets
3.0 years ago by Bogdan ★ 1.4k
4
votes
3
replies
1.9k
views
computing chromothripsis on cancer genomes
snp cnv sv cancer
updated 3.0 years ago by ▴ 340 • written 6.8 years ago by ★ 1.4k
0
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0
replies
2.0k
views
Comment: Comment: saving png images and X11
3.0 years ago by Bogdan ★ 1.4k
0
votes
2
replies
802
views
browser to visualize single cell data
scATAC-seq
updated 3.0 years ago by 15k • written 3.0 years ago by ★ 1.4k
0
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0
replies
486
views
HIC databases
Hi-C
3.1 years ago by Bogdan ★ 1.4k
2
votes
1
reply
866
views
scATAC-seq
scATAC-seq
3.1 years ago by Bogdan ★ 1.4k
2
votes
0
replies
866
views
Answer: Answer: scATAC-seq
3.1 years ago by Bogdan ★ 1.4k
0
votes
0
replies
566
views
ssvQC
ssvQC
3.2 years ago by Bogdan ★ 1.4k
0
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0
replies
2.0k
views
Comment: Comment: saving png images and X11
3.2 years ago by Bogdan ★ 1.4k
0
votes
5
replies
2.0k
views
saving png images and X11
scripting saving images and
3.0 years ago by Bogdan ★ 1.4k
0
votes
1
reply
743
views
HOMER on AWS
HOMER
updated 12 months ago by ▴ 10 • written 3.3 years ago by ★ 1.4k
0
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1
reply
826
views
compare the background levels in two chip-seq experiments
ChIPseq
updated 3.3 years ago by 11k • written 3.3 years ago by ★ 1.4k
0
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0
replies
846
views
Comment: Comment: interchromosomal interactions and 4C
3.3 years ago by Bogdan ★ 1.4k
0
votes
2
replies
846
views
interchromosomal interactions and 4C
4C
3.3 years ago by Bogdan ★ 1.4k
388 results • Page 1 of 8
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