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2
votes
6
replies
1.7k
views
Bedtools give different output
bedtools annotation genome SNP bash
2.8 years ago by anikcropscience ▴ 270
0
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0
replies
1.9k
views
Comment: Comment: Which VCF file to select for generating Multiple sequence alignment of a gene?
3.2 years ago by anikcropscience ▴ 270
0
votes
1
reply
1.9k
views
Comment: Comment: Which VCF file to select for generating Multiple sequence alignment of a gene?
3.2 years ago by anikcropscience ▴ 270
1
vote
5
replies
1.9k
views
Which VCF file to select for generating Multiple sequence alignment of a gene?
VCF GATK sequence alignment
3.2 years ago by anikcropscience ▴ 270
0
votes
0
replies
2.3k
views
Comment: Comment: Converting VCF file to table format
3.3 years ago by anikcropscience ▴ 270
0
votes
1
reply
2.3k
views
Comment: Comment: Converting VCF file to table format
3.3 years ago by anikcropscience ▴ 270
0
votes
1
reply
2.3k
views
Comment: Comment: Converting VCF file to table format
3.3 years ago by anikcropscience ▴ 270
0
votes
0
replies
1.3k
views
Comment: Comment: How to do clustering of SNPs according to linkage disequilibrium (r2) values?
3.3 years ago by anikcropscience ▴ 270
0
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0
replies
2.3k
views
Comment: Comment: Converting VCF file to table format
3.3 years ago by anikcropscience ▴ 270
2
votes
7
replies
2.3k
views
Converting VCF file to table format
SNP bash VCF R genome
3.3 years ago by anikcropscience ▴ 270
0
votes
0
replies
2.0k
views
Comment: Comment: FastaAlternateReferenceMaker is not outputting fasta sequence for multiple sampl
3.3 years ago by anikcropscience ▴ 270
1
vote
2
replies
2.0k
views
FastaAlternateReferenceMaker is not outputting fasta sequence for multiple samples from a VCF
GATK SNP fasta sequence alignment
3.3 years ago by anikcropscience ▴ 270
2
votes
0
replies
1.2k
views
How to estimate Watterson's Theta per population from ANGSD output?
SNP theta ANGSD nucleotide diversity genetic
3.4 years ago by anikcropscience ▴ 270
0
votes
0
replies
2.4k
views
Comment: Comment: How to obtain 200 bp flanking sequence from both sides of BLAST search?
3.4 years ago by anikcropscience ▴ 270
7
votes
7
replies
2.4k
views
How to obtain 200 bp flanking sequence from both sides of BLAST search?
sequence blast genome nucleotide
updated 3.4 years ago by 16k • written 3.4 years ago by ▴ 270
0
votes
0
replies
2.4k
views
Comment: Comment: How to obtain 200 bp flanking sequence from both sides of BLAST search?
3.4 years ago by anikcropscience ▴ 270
0
votes
0
replies
2.4k
views
Comment: Comment: How to obtain 200 bp flanking sequence from both sides of BLAST search?
3.4 years ago by anikcropscience ▴ 270
0
votes
0
replies
888
views
Comment: Comment: How to subset a multisample VCF file for performing selection scan analysis?
3.5 years ago by anikcropscience ▴ 270
0
votes
2
replies
888
views
How to subset a multisample VCF file for performing selection scan analysis?
bash SNP vcftools genomics
updated 2.4 years ago by 45k • written 3.5 years ago by ▴ 270
0
votes
0
replies
3.5k
views
Comment: Comment: How to perform Allele balance on a VCF file from GATK?
3.6 years ago by anikcropscience ▴ 270
0
votes
7
replies
3.5k
views
How to perform Allele balance on a VCF file from GATK?
bcftools SNP VCFtools GATK
updated 2.4 years ago by 45k • written 3.6 years ago by ▴ 270
0
votes
0
replies
3.5k
views
Comment: Comment: How to perform Allele balance on a VCF file from GATK?
3.6 years ago by anikcropscience ▴ 270
0
votes
0
replies
3.5k
views
Comment: Comment: How to perform Allele balance on a VCF file from GATK?
3.6 years ago by anikcropscience ▴ 270
0
votes
0
replies
3.5k
views
Comment: Comment: How to perform Allele balance on a VCF file from GATK?
3.6 years ago by anikcropscience ▴ 270
0
votes
0
replies
571
views
How to understand improvement in genome annotation?
Hi-C genome pacbio diploid annotation
3.7 years ago by anikcropscience ▴ 270
2
votes
0
replies
659
views
Should one concatenate two haplotype genome assemblies into one assembly?
PacBio genome-assembly whole-genome-sequence Hi-C
updated 2.8 years ago by 45k • written 3.7 years ago by ▴ 270
0
votes
0
replies
8.1k
views
Comment: Comment: How to run MD5 check for many fastq files in subdirectories?
3.8 years ago by anikcropscience ▴ 270
8
votes
12
replies
8.1k
views
How to run MD5 check for many fastq files in subdirectories?
sequencing MD5 genome Hiseq Illumina
updated 3.8 years ago by 21k • written 3.8 years ago by ▴ 270
1
vote
0
replies
8.1k
views
Comment: Comment: How to run MD5 check for many fastq files in subdirectories?
3.8 years ago by anikcropscience ▴ 270
0
votes
0
replies
8.1k
views
Comment: Comment: How to run MD5 check for many fastq files in subdirectories?
3.8 years ago by anikcropscience ▴ 270
0
votes
2
replies
8.1k
views
Comment: Comment: How to run MD5 check for many fastq files in subdirectories?
3.8 years ago by anikcropscience ▴ 270
0
votes
1
reply
8.1k
views
Comment: Comment: How to run MD5 check for many fastq files in subdirectories?
3.8 years ago by anikcropscience ▴ 270
0
votes
3
replies
1.4k
views
How to perform Linkage Disequilibrium analysis for significantly associated K-mers?
next-gen genome snp assembly
updated 3.8 years ago by • 0 • written 4.7 years ago by ▴ 270
0
votes
0
replies
750
views
How to manually curate a genome assembly?
genome-assembly alignment dotplot whole-genome-sequence
updated 2.8 years ago by 45k • written 3.8 years ago by ▴ 270
0
votes
0
replies
1.9k
views
Comment: Comment: How to improve a genome assembly using Dovetail and PacBio assembly?
3.8 years ago by anikcropscience ▴ 270
1
vote
2
replies
1.9k
views
How to improve a genome assembly using Dovetail and PacBio assembly?
genome HiFi PacBio assembly Dovetail
3.8 years ago by anikcropscience ▴ 270
0
votes
0
replies
701
views
How to deal with heterozygous genome assemblies for inversions, INDELs?
genome sequence SV heterozygosity assembly
3.9 years ago by anikcropscience ▴ 270
0
votes
1
reply
1.4k
views
Comment: Comment: Blast command line pipeline not working
3.9 years ago by anikcropscience ▴ 270
0
votes
3
replies
1.4k
views
Blast command line pipeline not working
bash-scripting gene BLAST
updated 3.9 years ago by ▴ 650 • written 3.9 years ago by ▴ 270
0
votes
0
replies
8.8k
views
Comment: Comment: How to retrieve fasta sequence after local blast?
3.9 years ago by anikcropscience ▴ 270
0
votes
1
reply
8.8k
views
Comment: Comment: How to retrieve fasta sequence after local blast?
3.9 years ago by anikcropscience ▴ 270
0
votes
0
replies
8.8k
views
Comment: Comment: How to retrieve fasta sequence after local blast?
3.9 years ago by anikcropscience ▴ 270
4
votes
6
replies
8.8k
views
How to retrieve fasta sequence after local blast?
genome sequence blast
updated 3.9 years ago by ★ 2.5k • written 3.9 years ago by ▴ 270
0
votes
0
replies
618
views
How to extract homologous sequence data from multiple .vcf.gz files?
sequence gene homologous vcf
3.9 years ago by anikcropscience ▴ 270
0
votes
0
replies
2.5k
views
Comment: Comment: Socat not found in the /usr/bin folder in MacOS
3.9 years ago by anikcropscience ▴ 270
0
votes
2
replies
2.5k
views
Socat not found in the /usr/bin folder in MacOS
Socat bash MacOS
3.9 years ago by anikcropscience ▴ 270
0
votes
0
replies
1.3k
views
How to perform Synteny analysis for a single gene?
alignment SNP genome gene R
4.4 years ago by anikcropscience ▴ 270
0
votes
0
replies
1.7k
views
How to plot rarefaction curves in R using Vegan?
gene richness rarefaction R
4.4 years ago by anikcropscience ▴ 270
0
votes
0
replies
4.3k
views
Comment: Comment: How to estimate the percent phenotypic variation explained by the significant SN
4.5 years ago by anikcropscience ▴ 270
0
votes
0
replies
4.3k
views
Comment: Comment: How to estimate the percent phenotypic variation explained by the significant SN
4.5 years ago by anikcropscience ▴ 270
183 results • Page 2 of 4
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