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856
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Comment: Comment: How to do clustering of SNPs according to linkage disequilibrium (r2) values?
21 months ago by anikcropscience ▴ 230
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0
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1.4k
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Comment: Comment: Converting VCF file to table format
21 months ago by anikcropscience ▴ 230
2
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7
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1.4k
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Converting VCF file to table format
SNP bash VCF R genome
21 months ago by anikcropscience ▴ 230
0
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0
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1.3k
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Comment: Comment: FastaAlternateReferenceMaker is not outputting fasta sequence for multiple sampl
22 months ago by anikcropscience ▴ 230
1
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2
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1.3k
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FastaAlternateReferenceMaker is not outputting fasta sequence for multiple samples from a VCF
GATK SNP fasta sequence alignment
22 months ago by anikcropscience ▴ 230
2
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0
replies
703
views
How to estimate Watterson's Theta per population from ANGSD output?
SNP theta ANGSD nucleotide diversity genetic
22 months ago by anikcropscience ▴ 230
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0
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1.3k
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Comment: Comment: How to obtain 200 bp flanking sequence from both sides of BLAST search?
23 months ago by anikcropscience ▴ 230
7
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7
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1.3k
views
How to obtain 200 bp flanking sequence from both sides of BLAST search?
sequence blast genome nucleotide
updated 23 months ago by 15k • written 23 months ago by ▴ 230
0
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0
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1.3k
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Comment: Comment: How to obtain 200 bp flanking sequence from both sides of BLAST search?
23 months ago by anikcropscience ▴ 230
0
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0
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1.3k
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Comment: Comment: How to obtain 200 bp flanking sequence from both sides of BLAST search?
23 months ago by anikcropscience ▴ 230
0
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0
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547
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Comment: Comment: How to subset a multisample VCF file for performing selection scan analysis?
24 months ago by anikcropscience ▴ 230
0
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2
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547
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How to subset a multisample VCF file for performing selection scan analysis?
bash SNP vcftools genomics
updated 10 months ago by 43k • written 24 months ago by ▴ 230
0
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0
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1.8k
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Comment: Comment: How to perform Allele balance on a VCF file from GATK?
2.1 years ago by anikcropscience ▴ 230
0
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7
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1.8k
views
How to perform Allele balance on a VCF file from GATK?
bcftools SNP VCFtools GATK
updated 10 months ago by 43k • written 2.1 years ago by ▴ 230
0
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0
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1.8k
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Comment: Comment: How to perform Allele balance on a VCF file from GATK?
2.1 years ago by anikcropscience ▴ 230
0
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0
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1.8k
views
Comment: Comment: How to perform Allele balance on a VCF file from GATK?
2.1 years ago by anikcropscience ▴ 230
0
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0
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1.8k
views
Comment: Comment: How to perform Allele balance on a VCF file from GATK?
2.1 years ago by anikcropscience ▴ 230
0
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0
replies
322
views
How to understand improvement in genome annotation?
Hi-C genome pacbio diploid annotation
2.2 years ago by anikcropscience ▴ 230
2
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0
replies
369
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Should one concatenate two haplotype genome assemblies into one assembly?
PacBio genome-assembly whole-genome-sequence Hi-C
updated 15 months ago by 43k • written 2.2 years ago by ▴ 230
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0
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4.4k
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Comment: Comment: How to run MD5 check for many fastq files in subdirectories?
2.2 years ago by anikcropscience ▴ 230
8
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12
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4.4k
views
How to run MD5 check for many fastq files in subdirectories?
sequencing MD5 genome Hiseq Illumina
updated 2.2 years ago by 21k • written 2.2 years ago by ▴ 230
1
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0
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4.4k
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Comment: Comment: How to run MD5 check for many fastq files in subdirectories?
2.2 years ago by anikcropscience ▴ 230
0
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0
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4.4k
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Comment: Comment: How to run MD5 check for many fastq files in subdirectories?
2.2 years ago by anikcropscience ▴ 230
0
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2
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4.4k
views
Comment: Comment: How to run MD5 check for many fastq files in subdirectories?
2.2 years ago by anikcropscience ▴ 230
0
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1
reply
4.4k
views
Comment: Comment: How to run MD5 check for many fastq files in subdirectories?
2.2 years ago by anikcropscience ▴ 230
0
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3
replies
841
views
How to perform Linkage Disequilibrium analysis for significantly associated K-mers?
next-gen genome snp assembly
updated 2.3 years ago by • 0 • written 3.1 years ago by ▴ 230
0
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0
replies
466
views
How to manually curate a genome assembly?
genome-assembly alignment dotplot whole-genome-sequence
updated 15 months ago by 43k • written 2.3 years ago by ▴ 230
0
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0
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852
views
Comment: Comment: How to improve a genome assembly using Dovetail and PacBio assembly?
2.3 years ago by anikcropscience ▴ 230
1
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2
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852
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How to improve a genome assembly using Dovetail and PacBio assembly?
genome HiFi PacBio assembly Dovetail
2.3 years ago by anikcropscience ▴ 230
0
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0
replies
427
views
How to deal with heterozygous genome assemblies for inversions, INDELs?
genome sequence SV heterozygosity assembly
2.3 years ago by anikcropscience ▴ 230
0
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1
reply
843
views
Comment: Comment: Blast command line pipeline not working
2.4 years ago by anikcropscience ▴ 230
0
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3
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843
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Blast command line pipeline not working
bash-scripting gene BLAST
updated 2.4 years ago by ▴ 610 • written 2.4 years ago by ▴ 230
0
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0
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4.7k
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Comment: Comment: How to retrieve fasta sequence after local blast?
2.4 years ago by anikcropscience ▴ 230
0
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1
reply
4.7k
views
Comment: Comment: How to retrieve fasta sequence after local blast?
2.4 years ago by anikcropscience ▴ 230
0
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0
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4.7k
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Comment: Comment: How to retrieve fasta sequence after local blast?
2.4 years ago by anikcropscience ▴ 230
3
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6
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4.7k
views
How to retrieve fasta sequence after local blast?
genome sequence blast
updated 2.4 years ago by ★ 2.5k • written 2.4 years ago by ▴ 230
0
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0
replies
396
views
How to extract homologous sequence data from multiple .vcf.gz files?
sequence gene homologous vcf
2.4 years ago by anikcropscience ▴ 230
0
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0
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1.5k
views
Comment: Comment: Socat not found in the /usr/bin folder in MacOS
2.4 years ago by anikcropscience ▴ 230
0
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2
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1.5k
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Socat not found in the /usr/bin folder in MacOS
Socat bash MacOS
2.4 years ago by anikcropscience ▴ 230
0
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0
replies
984
views
How to perform Synteny analysis for a single gene?
alignment SNP genome gene R
2.9 years ago by anikcropscience ▴ 230
0
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0
replies
1.2k
views
How to plot rarefaction curves in R using Vegan?
gene richness rarefaction R
2.9 years ago by anikcropscience ▴ 230
0
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0
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2.6k
views
Comment: Comment: How to estimate the percent phenotypic variation explained by the significant SN
3.0 years ago by anikcropscience ▴ 230
0
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0
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2.6k
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Comment: Comment: How to estimate the percent phenotypic variation explained by the significant SN
3.0 years ago by anikcropscience ▴ 230
0
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3
replies
2.6k
views
How to estimate the percent phenotypic variation explained by the significant SNP from a GWAS study?
GWAS variance statistics SNP R-studio
3.0 years ago by anikcropscience ▴ 230
0
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1
reply
3.1k
views
Comment: Comment: How to produce a heatmap by keeping the original data and a log color scale?
3.0 years ago by anikcropscience ▴ 230
2
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8
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3.1k
views
How to produce a heatmap by keeping the original data and a log color scale?
R heatmap ggplot2 visualization
updated 3.0 years ago by 21k • written 3.0 years ago by ▴ 230
0
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1
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3.1k
views
Answer: Answer: How to produce a heatmap by keeping the original data and a log color scale?
3.0 years ago by anikcropscience ▴ 230
0
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0
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3.1k
views
Comment: Comment: How to produce a heatmap by keeping the original data and a log color scale?
3.0 years ago by anikcropscience ▴ 230
0
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0
replies
3.1k
views
Comment: Comment: How to produce a heatmap by keeping the original data and a log color scale?
3.0 years ago by anikcropscience ▴ 230
0
votes
0
replies
937
views
Adding Principal components as covariates in GWAS studies
PCA SNP GWAS GEMMA
3.0 years ago by anikcropscience ▴ 230
176 results • Page 2 of 4
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