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comments
0
votes
0
replies
598
views
Answer:
Answer: DiffBind analysis with ENCODE data using R and .bed/.bam files
5 months ago by
Aspire
▴ 390
0
votes
0
replies
537
views
Workflow for DE after high-resolution CibersortX deconvolution
CibersortX
Deconvolution
6 months ago by
Aspire
▴ 390
1
vote
2
replies
623
views
Answer:
Answer: Error in deconvolution using CIBERSORTx
6 months ago by
Aspire
▴ 390
0
votes
1
reply
712
views
Comment:
Comment: Am I accounting for replicates correctly in pseudobulk analysis?
7 months ago by
Aspire
▴ 390
0
votes
3
replies
712
views
Am I accounting for replicates correctly in pseudobulk analysis?
deseq2
single-cell
pseudobulk
updated 7 months ago by
ATpoint
89k • written 7 months ago by
Aspire
▴ 390
0
votes
0
replies
2.0k
views
Comment:
Comment: Seeking a tool for enrichment of a small list of ranked genes
11 months ago by
Aspire
▴ 390
1
vote
1
reply
2.0k
views
Comment:
Comment: Seeking a tool for enrichment of a small list of ranked genes
11 months ago by
Aspire
▴ 390
4
votes
11
replies
2.0k
views
Seeking a tool for enrichment of a small list of ranked genes
enrichment
11 months ago by
Aspire
▴ 390
0
votes
2
replies
2.0k
views
Comment:
Comment: Seeking a tool for enrichment of a small list of ranked genes
11 months ago by
Aspire
▴ 390
0
votes
1
reply
2.0k
views
Comment:
Comment: Seeking a tool for enrichment of a small list of ranked genes
11 months ago by
Aspire
▴ 390
0
votes
0
replies
814
views
Comment:
Comment: Time-series statistics for a small amount of genes
14 months ago by
Aspire
▴ 390
1
vote
2
replies
814
views
Time-series statistics for a small amount of genes
rna-seq
time-series
14 months ago by
Aspire
▴ 390
0
votes
0
replies
19k
views
Comment:
Comment: Enrichment Score Interpretation
14 months ago by
Aspire
▴ 390
0
votes
0
replies
1.9k
views
Comment:
Comment: CIBERSORTx error (error in rep(2, size * length(cells) -1)) : invalid 'times' ar
14 months ago by
Aspire
▴ 390
1
vote
1
reply
1.2k
views
Creating a signature matrix using CibersortX
CibersortX
deconvolution
updated 14 months ago by
jared.andrews07
★ 19k • written 14 months ago by
Aspire
▴ 390
0
votes
0
replies
759
views
Comment:
Comment: Change of cell proportions or differential expression?
14 months ago by
Aspire
▴ 390
0
votes
0
replies
759
views
Comment:
Comment: Change of cell proportions or differential expression?
15 months ago by
Aspire
▴ 390
0
votes
3
replies
759
views
Change of cell proportions or differential expression?
deconvolution
differential-expression
14 months ago by
Aspire
▴ 390
0
votes
0
replies
1.8k
views
Comment:
Comment: Differential analysis of enrichment results
15 months ago by
Aspire
▴ 390
3
votes
8
replies
1.8k
views
Differential analysis of enrichment results
statistics
enrichment
15 months ago by
Aspire
▴ 390
0
votes
0
replies
1.8k
views
Comment:
Comment: Differential analysis of enrichment results
15 months ago by
Aspire
▴ 390
0
votes
2
replies
1.8k
views
Comment:
Comment: Differential analysis of enrichment results
15 months ago by
Aspire
▴ 390
0
votes
0
replies
2.5k
views
Comment:
Comment: Is it possible to run CibersortX with a very small number of samples?
17 months ago by
Aspire
▴ 390
2
votes
4
replies
2.5k
views
Is it possible to run CibersortX with a very small number of samples?
cibersortx
17 months ago by
Aspire
▴ 390
2
votes
1
reply
1.4k
views
Answer:
Answer: p-value in CIBERSORT
updated 18 months ago by
Ram
45k • written 18 months ago by
Aspire
▴ 390
1
vote
0
replies
730
views
Comment:
Comment: Adjust pvalue in R with different approach give me all different outcome
updated 18 months ago by
Ram
45k • written 18 months ago by
Aspire
▴ 390
1
vote
0
replies
781
views
Why not use iBAQ for calculating differential abundance of proteins?
protein
maxquant
18 months ago by
Aspire
▴ 390
0
votes
0
replies
8.5k
views
Comment:
Comment: Error in CIBERSORTx
18 months ago by
Aspire
▴ 390
4
votes
3
replies
1.0k
views
Demonstrating lack of difference between two peaksets
DiffBind
ChIP-seq
updated 19 months ago by
LauferVA
4.8k • written 19 months ago by
Aspire
▴ 390
10
votes
4
replies
1.4k
views
6 follow
Doublechecking enrichment of promoters of DE genes
motifs
enrichment
updated 22 months ago by
ATpoint
89k • written 22 months ago by
Aspire
▴ 390
0
votes
1
reply
1.6k
views
Comment:
Comment: Consensus peaksets in DiffBind - conceptual questinos
23 months ago by
Aspire
▴ 390
1
vote
3
replies
1.6k
views
Consensus peaksets in DiffBind - conceptual questinos
DiffBind
updated 23 months ago by
Rory Stark
★ 2.2k • written 23 months ago by
Aspire
▴ 390
0
votes
0
replies
3.4k
views
Comment:
Comment: What statistical test to apply for DE after CibersortX deconvolution
2.1 years ago by
Aspire
▴ 390
0
votes
1
reply
3.4k
views
Comment:
Comment: What statistical test to apply for DE after CibersortX deconvolution
2.5 years ago by
Aspire
▴ 390
1
vote
5
replies
3.4k
views
What statistical test to apply for DE after CibersortX deconvolution
cibersortx
differential-expression
t-test
deconvolution
2.1 years ago by
Aspire
▴ 390
0
votes
0
replies
1.6k
views
Comment:
Comment: Brain cell type deconvolution
2.5 years ago by
Aspire
▴ 390
0
votes
1
reply
2.8k
views
Comment:
Comment: ERROR using CIBERSORTx Docker version
2.5 years ago by
Aspire
▴ 390
1
vote
1
reply
781
views
How to correctly apply -len/fragLength parameter in Homer's annotatePeaks.pl ?
homer
updated 3.0 years ago by
Matthias Zepper
5.1k • written 3.0 years ago by
Aspire
▴ 390
5
votes
2
replies
1.6k
views
How to avoid overfitting using SVA?
RNA-Seq
sva
overfitting
updated 3.4 years ago by
ATpoint
89k • written 5.1 years ago by
Aspire
▴ 390
5
votes
3
replies
2.1k
views
How to interpret similar motifs in Homer results
Homer
updated 3.5 years ago by
Mensur Dlakic
★ 30k • written 3.5 years ago by
Aspire
▴ 390
5
votes
2
replies
1.1k
views
Why does DiffBind use the count of reads that fall within peaks?
DiffBind
updated 3.6 years ago by
Rory Stark
★ 2.2k • written 3.6 years ago by
Aspire
▴ 390
0
votes
0
replies
720
views
A question on Homer normalization
homer
updated 3.6 years ago by
ATpoint
89k • written 3.6 years ago by
Aspire
▴ 390
2
votes
1
reply
999
views
What is the correct order of flooring-normalization-batch correction for microarrays ?
microarray
updated 3.7 years ago by
MRezaei
▴ 40 • written 3.7 years ago by
Aspire
▴ 390
1
vote
0
replies
1.0k
views
Comment:
Comment: DESeq2 to compare between samples
3.7 years ago by
Aspire
▴ 390
0
votes
0
replies
564
views
Is there a public Yabi server available?
yabi
3.8 years ago by
Aspire
▴ 390
0
votes
0
replies
657
views
How to perform gene set enrichment analysis on genes that contribute to a specific PC?
pca
updated 3.9 years ago by
ATpoint
89k • written 3.9 years ago by
Aspire
▴ 390
0
votes
4
replies
2.0k
views
What is the precise range that Solexa quality scores can take?
phred
solexa
quality-score
fastq
4.0 years ago by
Aspire
▴ 390
0
votes
1
reply
2.0k
views
Comment:
Comment: What is the range that Solexa quality scores can take?
4.0 years ago by
Aspire
▴ 390
0
votes
0
replies
2.8k
views
Comment:
Comment: How to check which genes affect a continuous phenotype
4.1 years ago by
Aspire
▴ 390
0
votes
1
reply
2.8k
views
Comment:
Comment: How to check which genes affect a continuous phenotype
4.1 years ago by
Aspire
▴ 390
156 results • Page
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