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0
votes
0
replies
46
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Why not use iBAQ for calculating differential abundance of proteins?
protein maxquant
7 hours ago by Aspire ▴ 300
0
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0
replies
3.9k
views
Comment: Comment: Error in CIBERSORTx
11 days ago by Aspire ▴ 300
4
votes
3
replies
353
views
Demonstrating lack of difference between two peaksets
DiffBind ChIP-seq
updated 6 weeks ago by 4.2k • written 6 weeks ago by ▴ 300
10
votes
4
replies
498
views
6 follow
Doublechecking enrichment of promoters of DE genes
motifs enrichment
updated 3 months ago by 82k • written 3 months ago by ▴ 300
0
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1
reply
472
views
Comment: Comment: Consensus peaksets in DiffBind - conceptual questinos
4 months ago by Aspire ▴ 300
1
vote
3
replies
472
views
Consensus peaksets in DiffBind - conceptual questinos
DiffBind
updated 4 months ago by ★ 2.0k • written 4 months ago by ▴ 300
0
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0
replies
1.5k
views
Comment: Comment: What statistical test to apply for DE after CibersortX deconvolution
7 months ago by Aspire ▴ 300
0
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1
reply
1.5k
views
Comment: Comment: What statistical test to apply for DE after CibersortX deconvolution
11 months ago by Aspire ▴ 300
1
vote
5
replies
1.5k
views
What statistical test to apply for DE after CibersortX deconvolution
cibersortx differential-expression t-test deconvolution
7 months ago by Aspire ▴ 300
0
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0
replies
830
views
Comment: Comment: Brain cell type deconvolution
12 months ago by Aspire ▴ 300
0
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1
reply
1.6k
views
Comment: Comment: ERROR using CIBERSORTx Docker version
12 months ago by Aspire ▴ 300
2
votes
2
replies
999
views
Is it possible to run CibersortX with a very small number of samples?
cibersortx
updated 16 months ago by • 0 • written 18 months ago by ▴ 300
1
vote
1
reply
428
views
How to correctly apply -len/fragLength parameter in Homer's annotatePeaks.pl ?
homer
updated 18 months ago by 4.5k • written 18 months ago by ▴ 300
5
votes
2
replies
1.1k
views
How to avoid overfitting using SVA?
RNA-Seq sva overfitting
updated 22 months ago by 82k • written 3.6 years ago by ▴ 300
5
votes
3
replies
1.2k
views
How to interpret similar motifs in Homer results
Homer
updated 23 months ago by ★ 27k • written 23 months ago by ▴ 300
5
votes
2
replies
638
views
Why does DiffBind use the count of reads that fall within peaks?
DiffBind
updated 2.1 years ago by ★ 2.0k • written 2.1 years ago by ▴ 300
0
votes
0
replies
455
views
A question on Homer normalization
homer
updated 2.1 years ago by 82k • written 2.1 years ago by ▴ 300
2
votes
1
reply
707
views
What is the correct order of flooring-normalization-batch correction for microarrays ?
microarray
updated 2.2 years ago by ▴ 20 • written 2.2 years ago by ▴ 300
1
vote
0
replies
650
views
Comment: Comment: DESeq2 to compare between samples
2.2 years ago by Aspire ▴ 300
0
votes
0
replies
365
views
Is there a public Yabi server available?
yabi
2.3 years ago by Aspire ▴ 300
0
votes
0
replies
430
views
How to perform gene set enrichment analysis on genes that contribute to a specific PC?
pca
updated 2.3 years ago by 82k • written 2.3 years ago by ▴ 300
0
votes
4
replies
1.2k
views
What is the precise range that Solexa quality scores can take?
phred solexa quality-score fastq
2.5 years ago by Aspire ▴ 300
0
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1
reply
1.2k
views
Comment: Comment: What is the range that Solexa quality scores can take?
2.5 years ago by Aspire ▴ 300
0
votes
0
replies
1.6k
views
Comment: Comment: How to check which genes affect a continuous phenotype
2.5 years ago by Aspire ▴ 300
0
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1
reply
1.6k
views
Comment: Comment: How to check which genes affect a continuous phenotype
2.5 years ago by Aspire ▴ 300
0
votes
2
replies
1.6k
views
Comment: Comment: How to check which genes affect a continuous phenotype
2.7 years ago by Aspire ▴ 300
3
votes
3
replies
1.2k
views
What QC measures to look for when performing deconvolution?
QC CibersortX deconvolution
updated 2.3 years ago by ★ 9.4k • written 2.7 years ago by ▴ 300
1
vote
2
replies
1.2k
views
Comment: Comment: What QC measures to look for when performing deconvolution?
2.7 years ago by Aspire ▴ 300
0
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1
reply
852
views
Comment: Comment: Gene filtering based on Coefficient of Variation > 50%
2.7 years ago by Aspire ▴ 300
0
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1
reply
3.5k
views
Answer: Answer: Searching a venn diagram online tool
2.8 years ago by Aspire ▴ 300
5
votes
6
replies
1.6k
views
How to check which genes affect a continuous phenotype
multiple-comparisons multiple-regression microarrays regression
2.5 years ago by Aspire ▴ 300
0
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1
reply
2.5k
views
Comment: Comment: Purpose of bamCoverage RPKM normalization method
2.9 years ago by Aspire ▴ 300
4
votes
3
replies
2.5k
views
Purpose of bamCoverage RPKM normalization method
rpkm bamCoverage
updated 2.9 years ago by 82k • written 2.9 years ago by ▴ 300
0
votes
0
replies
11k
views
Comment: Comment: correct way of analyzing cell proportions in singlecell data
2.9 years ago by Aspire ▴ 300
3
votes
11
replies
2.3k
views
Does DiffBind correctly designate peaks with very small fold-change to be significant
DiffBind
updated 2.9 years ago by ★ 2.0k • written 3.3 years ago by ▴ 300
0
votes
0
replies
3.1k
views
Comment: Comment: DESeq2 count matrix read in
2.9 years ago by Aspire ▴ 300
0
votes
3
replies
1.1k
views
Cellular deconvolution intuition
deconvolution
3.0 years ago by Aspire ▴ 300
0
votes
0
replies
1.1k
views
Answer: Answer: Cellular deconvolution intuition
3.0 years ago by Aspire ▴ 300
2
votes
3
replies
737
views
Coverage required for 3' end RNA-seq methods
cel-seq2
updated 3.0 years ago by 8.7k • written 3.0 years ago by ▴ 300
0
votes
1
reply
2.1k
views
Comment: Comment: What are the necessary and sufficient conditions for applying a multiple hypothe
3.0 years ago by Aspire ▴ 300
0
votes
0
replies
1.1k
views
Comment: Comment: Cellular deconvolution intuition
3.0 years ago by Aspire ▴ 300
0
votes
1
reply
3.6k
views
Comment: Comment: How to get output of annotated genes from ChIPseeker tool
3.0 years ago by Aspire ▴ 300
0
votes
0
replies
1.2k
views
Comment: Comment: Help generating multiple annotations under one H3K27me3 peak
3.0 years ago by Aspire ▴ 300
2
votes
0
replies
1.7k
views
Answer: Answer: A mismatch between DiffBind's results and the same results retreieved as DESeq2
3.1 years ago by Aspire ▴ 300
0
votes
1
reply
1.7k
views
Comment: Comment: A mismatch between DiffBind's results and the same results retreieved as DESeq2
3.1 years ago by Aspire ▴ 300
0
votes
1
reply
2.1k
views
Comment: Comment: What are the necessary and sufficient conditions for applying a multiple hypothe
3.1 years ago by Aspire ▴ 300
0
votes
1
reply
1.7k
views
Comment: Comment: A mismatch between DiffBind's results and the same results retreieved as DESeq2
3.1 years ago by Aspire ▴ 300
2
votes
6
replies
1.7k
views
A mismatch between DiffBind's results and the same results retreieved as DESeq2 (from DiffBind)
DiffBind
updated 3.0 years ago by ★ 16k • written 3.1 years ago by ▴ 300
0
votes
1
reply
2.1k
views
Comment: Comment: What are the necessary and sufficient conditions for applying a multiple hypothe
3.1 years ago by Aspire ▴ 300
5
votes
8
replies
2.1k
views
What are the necessary and sufficient conditions for applying a multiple hypothesis correction?
multiple-comparisons statistics
updated 3.0 years ago by 22k • written 3.1 years ago by ▴ 300
132 results • Page 1 of 3
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