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598
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Answer: Answer: DiffBind analysis with ENCODE data using R and .bed/.bam files
5 months ago by Aspire ▴ 390
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0
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537
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Workflow for DE after high-resolution CibersortX deconvolution
CibersortX Deconvolution
6 months ago by Aspire ▴ 390
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2
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623
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Answer: Answer: Error in deconvolution using CIBERSORTx
6 months ago by Aspire ▴ 390
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1
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712
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Comment: Comment: Am I accounting for replicates correctly in pseudobulk analysis?
7 months ago by Aspire ▴ 390
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3
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712
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Am I accounting for replicates correctly in pseudobulk analysis?
deseq2 single-cell pseudobulk
updated 7 months ago by 89k • written 7 months ago by ▴ 390
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0
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2.0k
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Comment: Comment: Seeking a tool for enrichment of a small list of ranked genes
11 months ago by Aspire ▴ 390
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1
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2.0k
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Comment: Comment: Seeking a tool for enrichment of a small list of ranked genes
11 months ago by Aspire ▴ 390
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11
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2.0k
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Seeking a tool for enrichment of a small list of ranked genes
enrichment
11 months ago by Aspire ▴ 390
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2
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2.0k
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Comment: Comment: Seeking a tool for enrichment of a small list of ranked genes
11 months ago by Aspire ▴ 390
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1
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2.0k
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Comment: Comment: Seeking a tool for enrichment of a small list of ranked genes
11 months ago by Aspire ▴ 390
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0
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814
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Comment: Comment: Time-series statistics for a small amount of genes
14 months ago by Aspire ▴ 390
1
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2
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814
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Time-series statistics for a small amount of genes
rna-seq time-series
14 months ago by Aspire ▴ 390
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0
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19k
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Comment: Comment: Enrichment Score Interpretation
14 months ago by Aspire ▴ 390
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0
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1.9k
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Comment: Comment: CIBERSORTx error (error in rep(2, size * length(cells) -1)) : invalid 'times' ar
14 months ago by Aspire ▴ 390
1
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1
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1.2k
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Creating a signature matrix using CibersortX
CibersortX deconvolution
updated 14 months ago by ★ 19k • written 14 months ago by ▴ 390
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0
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759
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Comment: Comment: Change of cell proportions or differential expression?
14 months ago by Aspire ▴ 390
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0
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759
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Comment: Comment: Change of cell proportions or differential expression?
15 months ago by Aspire ▴ 390
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3
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759
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Change of cell proportions or differential expression?
deconvolution differential-expression
14 months ago by Aspire ▴ 390
0
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0
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1.8k
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Comment: Comment: Differential analysis of enrichment results
15 months ago by Aspire ▴ 390
3
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8
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1.8k
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Differential analysis of enrichment results
statistics enrichment
15 months ago by Aspire ▴ 390
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0
replies
1.8k
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Comment: Comment: Differential analysis of enrichment results
15 months ago by Aspire ▴ 390
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2
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1.8k
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Comment: Comment: Differential analysis of enrichment results
15 months ago by Aspire ▴ 390
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0
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2.5k
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Comment: Comment: Is it possible to run CibersortX with a very small number of samples?
17 months ago by Aspire ▴ 390
2
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4
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2.5k
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Is it possible to run CibersortX with a very small number of samples?
cibersortx
17 months ago by Aspire ▴ 390
2
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1
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1.4k
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Answer: Answer: p-value in CIBERSORT
updated 18 months ago by 45k • written 18 months ago by ▴ 390
1
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0
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730
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Comment: Comment: Adjust pvalue in R with different approach give me all different outcome
updated 18 months ago by 45k • written 18 months ago by ▴ 390
1
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0
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781
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Why not use iBAQ for calculating differential abundance of proteins?
protein maxquant
18 months ago by Aspire ▴ 390
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0
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8.5k
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Comment: Comment: Error in CIBERSORTx
18 months ago by Aspire ▴ 390
4
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3
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1.0k
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Demonstrating lack of difference between two peaksets
DiffBind ChIP-seq
updated 19 months ago by 4.8k • written 19 months ago by ▴ 390
10
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4
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1.4k
views
6 follow
Doublechecking enrichment of promoters of DE genes
motifs enrichment
updated 22 months ago by 89k • written 22 months ago by ▴ 390
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1
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1.6k
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Comment: Comment: Consensus peaksets in DiffBind - conceptual questinos
23 months ago by Aspire ▴ 390
1
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3
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1.6k
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Consensus peaksets in DiffBind - conceptual questinos
DiffBind
updated 23 months ago by ★ 2.2k • written 23 months ago by ▴ 390
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0
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3.4k
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Comment: Comment: What statistical test to apply for DE after CibersortX deconvolution
2.1 years ago by Aspire ▴ 390
0
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1
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3.4k
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Comment: Comment: What statistical test to apply for DE after CibersortX deconvolution
2.5 years ago by Aspire ▴ 390
1
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5
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3.4k
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What statistical test to apply for DE after CibersortX deconvolution
cibersortx differential-expression t-test deconvolution
2.1 years ago by Aspire ▴ 390
0
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0
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1.6k
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Comment: Comment: Brain cell type deconvolution
2.5 years ago by Aspire ▴ 390
0
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1
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2.8k
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Comment: Comment: ERROR using CIBERSORTx Docker version
2.5 years ago by Aspire ▴ 390
1
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1
reply
781
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How to correctly apply -len/fragLength parameter in Homer's annotatePeaks.pl ?
homer
updated 3.0 years ago by 5.1k • written 3.0 years ago by ▴ 390
5
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2
replies
1.6k
views
How to avoid overfitting using SVA?
RNA-Seq sva overfitting
updated 3.4 years ago by 89k • written 5.1 years ago by ▴ 390
5
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3
replies
2.1k
views
How to interpret similar motifs in Homer results
Homer
updated 3.5 years ago by ★ 30k • written 3.5 years ago by ▴ 390
5
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2
replies
1.1k
views
Why does DiffBind use the count of reads that fall within peaks?
DiffBind
updated 3.6 years ago by ★ 2.2k • written 3.6 years ago by ▴ 390
0
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0
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720
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A question on Homer normalization
homer
updated 3.6 years ago by 89k • written 3.6 years ago by ▴ 390
2
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1
reply
999
views
What is the correct order of flooring-normalization-batch correction for microarrays ?
microarray
updated 3.7 years ago by ▴ 40 • written 3.7 years ago by ▴ 390
1
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0
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1.0k
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Comment: Comment: DESeq2 to compare between samples
3.7 years ago by Aspire ▴ 390
0
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0
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564
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Is there a public Yabi server available?
yabi
3.8 years ago by Aspire ▴ 390
0
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0
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657
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How to perform gene set enrichment analysis on genes that contribute to a specific PC?
pca
updated 3.9 years ago by 89k • written 3.9 years ago by ▴ 390
0
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4
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2.0k
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What is the precise range that Solexa quality scores can take?
phred solexa quality-score fastq
4.0 years ago by Aspire ▴ 390
0
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1
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2.0k
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Comment: Comment: What is the range that Solexa quality scores can take?
4.0 years ago by Aspire ▴ 390
0
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0
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2.8k
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Comment: Comment: How to check which genes affect a continuous phenotype
4.1 years ago by Aspire ▴ 390
0
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1
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2.8k
views
Comment: Comment: How to check which genes affect a continuous phenotype
4.1 years ago by Aspire ▴ 390
156 results • Page 1 of 4
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