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Comment: C: Get intersection of files occuring in at least 2 files?
4.1 years ago by vctrm67 ▴ 50
1
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7
replies
1.4k
views
Get intersection of files occuring in at least 2 files?
bedtools
updated 4.1 years ago by 35k • written 4.1 years ago by ▴ 50
0
votes
8
replies
1.7k
views
Mutect output for CNV calling
cnv
updated 4.2 years ago by 20 • written 4.3 years ago by ▴ 50
0
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1
reply
4.7k
views
Comment: C: Bcftools unsorted positions?
4.2 years ago by vctrm67 ▴ 50
0
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7
replies
4.7k
views
Bcftools unsorted positions?
bcftools
4.2 years ago by vctrm67 ▴ 50
0
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1
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4.7k
views
Comment: C: Bcftools unsorted positions?
updated 4.2 years ago by 43k • written 4.2 years ago by ▴ 50
4
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4
replies
1.0k
views
Replacing BAM reference
bam
updated 4.2 years ago by 14k • written 4.2 years ago by ▴ 50
0
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1
reply
1.1k
views
CNVKit interpretation of results?
cnvkit
updated 4.2 years ago by ★ 16k • written 4.2 years ago by ▴ 50
0
votes
1
reply
777
views
Comment: C: Annovar produces uncalled mutations?
4.2 years ago by vctrm67 ▴ 50
0
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3
replies
777
views
Annovar produces uncalled mutations?
annovar
updated 4.2 years ago by 87k • written 4.2 years ago by ▴ 50
0
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1
reply
1.7k
views
Comment: C: Mutect output for CNV calling
4.3 years ago by vctrm67 ▴ 50
0
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1
reply
1.7k
views
Comment: C: Mutect output for CNV calling
4.3 years ago by vctrm67 ▴ 50
0
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2
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1.7k
views
Comment: C: Mutect output for CNV calling
4.3 years ago by vctrm67 ▴ 50
0
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1
reply
1.6k
views
Comment: C: Calling CNVs without a normal
4.3 years ago by vctrm67 ▴ 50
0
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0
replies
611
views
Eliminating panel mutations based on coverage of PoN
GATK filtering
4.3 years ago by vctrm67 ▴ 50
0
votes
1
reply
691
views
GATK BaseRecalibrator and platform?
gatk
4.3 years ago by vctrm67 ▴ 50
0
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1
reply
1.2k
views
Comment: C: Hg19 version based on bam file contigs?
4.3 years ago by vctrm67 ▴ 50
0
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0
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1.2k
views
Comment: C: Hg19 version based on bam file contigs?
4.3 years ago by vctrm67 ▴ 50
1
vote
5
replies
1.2k
views
Hg19 version based on bam file contigs?
hg19
4.3 years ago by vctrm67 ▴ 50
2
votes
6
replies
992
views
Forum: Error in posting to Biostars?
meta
updated 10 months ago by 43k • written 4.3 years ago by ▴ 50
3
votes
10
replies
3.0k
views
Illumina WES intervals file for coverage analysis?
illumina
updated 4.3 years ago by ★ 1.9k • written 4.3 years ago by ▴ 50
0
votes
1
reply
992
views
Comment: C: Error in posting to Biostars?
4.3 years ago by vctrm67 ▴ 50
0
votes
1
reply
1.1k
views
Samtools for corrupt bam?
samtools
4.3 years ago by vctrm67 ▴ 50
0
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0
replies
3.0k
views
Comment: C: Illumina WES intervals file for coverage analysis?
4.3 years ago by vctrm67 ▴ 50
0
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1
reply
3.0k
views
Comment: C: Illumina WES intervals file for coverage analysis?
4.3 years ago by vctrm67 ▴ 50
0
votes
2
replies
3.0k
views
Comment: C: Illumina WES intervals file for coverage analysis?
4.3 years ago by vctrm67 ▴ 50
0
votes
1
reply
3.0k
views
Comment: C: Illumina WES intervals file for coverage analysis?
4.3 years ago by vctrm67 ▴ 50
1
vote
1
reply
2.0k
views
Using Bedtools coverage to find BAM coverage?
bedtools
written 4.5 years ago by ▴ 50
0
votes
0
replies
817
views
Sequenza gives sequence not found error?
sequenza
updated 4.3 years ago by 20 • written 4.5 years ago by ▴ 50
0
votes
1
reply
1.1k
views
Comment: C: Annovar in hg19 mode
4.4 years ago by vctrm67 ▴ 50
0
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4
replies
1.1k
views
Annovar in hg19 mode
annovar
4.4 years ago by vctrm67 ▴ 50
0
votes
0
replies
3.0k
views
Comment: C: GATK Interval list for processing mouse genome WGS
4.4 years ago by vctrm67 ▴ 50
0
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1
reply
3.0k
views
Comment: A: GATK Interval list for processing mouse genome WGS
4.4 years ago by vctrm67 ▴ 50
0
votes
1
reply
1.7k
views
LiftOver from b37
liftover
updated 4.5 years ago by 161k • written 4.5 years ago by ▴ 50
0
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1
reply
2.1k
views
Comment: C: Bcftools concat gives chromosome contiguous error?
4.5 years ago by vctrm67 ▴ 50
0
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0
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2.1k
views
Comment: C: Bcftools concat gives chromosome contiguous error?
4.5 years ago by vctrm67 ▴ 50
2
votes
5
replies
2.1k
views
Bcftools concat gives chromosome contiguous error?
bcftools
4.5 years ago by vctrm67 ▴ 50
3
votes
1
reply
2.8k
views
Hg38 to b37 LiftOver chain?
picard
4.5 years ago by vctrm67 ▴ 50
0
votes
1
reply
1.5k
views
Using GATK AddOrReplaceReadGroups
GATK
updated 4.5 years ago by 161k • written 4.5 years ago by ▴ 50
0
votes
0
replies
1.0k
views
How to use CNVKit
cnvkit
4.5 years ago by vctrm67 ▴ 50
1
vote
1
reply
619
views
Combine samples in bam/vcf
GATK
updated 4.5 years ago by 161k • written 4.5 years ago by ▴ 50
0
votes
0
replies
1.1k
views
Comment: C: Error when unzipping .gz files from GATK?
4.5 years ago by vctrm67 ▴ 50
0
votes
2
replies
1.1k
views
Error when unzipping .gz files from GATK?
GATK
updated 4.5 years ago by 43k • written 4.5 years ago by ▴ 50
0
votes
1
reply
1.6k
views
Comment: C: Combining two VCFs each with own set of mutations
4.5 years ago by vctrm67 ▴ 50
0
votes
3
replies
1.6k
views
Combining two VCFs each with own set of mutations
vcf
updated 4.5 years ago by ★ 16k • written 4.5 years ago by ▴ 50
0
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1
reply
1.4k
views
Comment: C: Comparing calls from different VCFs
4.6 years ago by vctrm67 ▴ 50
2
votes
4
replies
1.4k
views
Comparing calls from different VCFs
vcf maf
4.6 years ago by vctrm67 ▴ 50
0
votes
1
reply
3.3k
views
Comment: C: GATK Best Practices HaplotypeCaller Multi-sample Error
4.6 years ago by vctrm67 ▴ 50
0
votes
2
replies
3.3k
views
Comment: C: GATK Best Practices HaplotypeCaller Multi-sample Error
4.6 years ago by vctrm67 ▴ 50
1
vote
7
replies
3.3k
views
GATK Best Practices HaplotypeCaller Multi-sample Error
GATK HaplotypeCaller
4.6 years ago by vctrm67 ▴ 50
115 results • Page 2 of 3
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