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1
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1
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913
views
lofreq empty output?
lofreq
updated 20 months ago by ▴ 50 • written 3.4 years ago by ▴ 40
1
vote
4
replies
2.3k
views
Interpreting GISTIC2 output
GISTIC
updated 22 months ago by ★ 1.2k • written 3.0 years ago by ▴ 40
0
votes
2
replies
1.0k
views
HRD score LST?
cnv
updated 2.1 years ago by ★ 1.1k • written 3.0 years ago by ▴ 40
2
votes
1
reply
558
views
Getting sample IDs from dbGaP SRR?
dbgap
updated 2.6 years ago by 20 • written 2.7 years ago by ▴ 40
0
votes
0
replies
465
views
Extract VCF of tumor variants from a list of SNPs
mutect2 SNP
2.7 years ago by vctrm67 ▴ 40
0
votes
1
reply
1.7k
views
Comment: C: CNVKit for unmatched tumor-only WGS samples
2.7 years ago by vctrm67 ▴ 40
0
votes
6
replies
1.7k
views
CNVKit for unmatched tumor-only WGS samples
cnvkit
updated 6 months ago by ▴ 760 • written 2.7 years ago by ▴ 40
0
votes
1
reply
1.7k
views
Comment: C: CNVKit for unmatched tumor-only WGS samples
2.7 years ago by vctrm67 ▴ 40
0
votes
2
replies
933
views
Mutect2 missing mutations
mutect
updated 2.8 years ago by 40k • written 2.8 years ago by ▴ 40
0
votes
0
replies
590
views
SV calling with duplication amplification
sv
2.9 years ago by vctrm67 ▴ 40
0
votes
1
reply
2.3k
views
Comment: C: Interpreting GISTIC2 output
3.0 years ago by vctrm67 ▴ 40
0
votes
1
reply
726
views
Comment: C: Amplification over deletion/Deletion over amplification?
3.0 years ago by vctrm67 ▴ 40
0
votes
3
replies
726
views
Amplification over deletion/Deletion over amplification?
gistic
updated 3.0 years ago by 86k • written 3.0 years ago by ▴ 40
5
votes
3
replies
2.3k
views
bedtools sort doesn't properly sort
bedtools
updated 3.0 years ago by 14k • written 3.1 years ago by ▴ 40
0
votes
0
replies
3.2k
views
Comment: C: GISTIC 2.0 markers
3.0 years ago by vctrm67 ▴ 40
0
votes
1
reply
3.2k
views
Comment: C: GISTIC 2.0 markers
3.0 years ago by vctrm67 ▴ 40
0
votes
0
replies
640
views
bedtools closest default?
bedtools
3.1 years ago by vctrm67 ▴ 40
0
votes
0
replies
3.4k
views
Comment: C: GISTIC 2.0 for sequencing data
3.1 years ago by vctrm67 ▴ 40
0
votes
1
reply
1.2k
views
Comment: C: Somatic SNVs vs. Germline SNPs for allele-specific copy number analysis
3.1 years ago by vctrm67 ▴ 40
0
votes
1
reply
1.2k
views
Comment: C: Somatic SNVs vs. Germline SNPs for allele-specific copy number analysis
3.1 years ago by vctrm67 ▴ 40
0
votes
1
reply
1.2k
views
Comment: C: Somatic SNVs vs. Germline SNPs for allele-specific copy number analysis
3.1 years ago by vctrm67 ▴ 40
0
votes
1
reply
1.2k
views
Comment: C: Somatic SNVs vs. Germline SNPs for allele-specific copy number analysis
3.1 years ago by vctrm67 ▴ 40
3
votes
9
replies
1.2k
views
Somatic SNVs vs. Germline SNPs for allele-specific copy number analysis
CNV
3.1 years ago by vctrm67 ▴ 40
0
votes
2
replies
3.4k
views
Comment: C: GISTIC 2.0 for sequencing data
3.1 years ago by vctrm67 ▴ 40
0
votes
1
reply
3.4k
views
Comment: C: GISTIC 2.0 for sequencing data
3.1 years ago by vctrm67 ▴ 40
0
votes
7
replies
3.4k
views
GISTIC 2.0 for sequencing data
gistic sequencing wgs cnv cna
3.1 years ago by vctrm67 ▴ 40
1
vote
3
replies
826
views
Calling CNVs using a single tumor sample
cnv
3.1 years ago by vctrm67 ▴ 40
0
votes
0
replies
453
views
CNV segmentation purpose
cnv
3.1 years ago by vctrm67 ▴ 40
1
vote
4
replies
660
views
Detecting aneuploidy in sequencing data or copy number profile?
ngs
updated 3.1 years ago by 13k • written 3.1 years ago by ▴ 40
0
votes
0
replies
660
views
Comment: A: Detecting aneuploidy in sequencing data or copy number profile?
3.1 years ago by vctrm67 ▴ 40
0
votes
0
replies
660
views
Comment: C: Detecting aneuploidy in sequencing data or copy number profile?
3.1 years ago by vctrm67 ▴ 40
0
votes
0
replies
508
views
ASCAT CN vs SNP probes
ascat
3.2 years ago by vctrm67 ▴ 40
0
votes
3
replies
2.0k
views
Calculating HRD score
HRD
updated 23 months ago by • 0 • written 3.2 years ago by ▴ 40
0
votes
1
reply
767
views
Number of probes per segment from ASCAT SNP array output?
ascat
3.2 years ago by vctrm67 ▴ 40
0
votes
0
replies
1.3k
views
Comment: C: TCGA CNV data reformatting
3.2 years ago by vctrm67 ▴ 40
0
votes
4
replies
1.3k
views
TCGA CNV data reformatting
CNV
updated 3.2 years ago by ▴ 550 • written 3.2 years ago by ▴ 40
0
votes
0
replies
1.3k
views
Comment: C: TCGA CNV data reformatting
3.2 years ago by vctrm67 ▴ 40
0
votes
1
reply
735
views
bcftools isec question?
bcftools
updated 3.3 years ago by 157k • written 3.3 years ago by ▴ 40
0
votes
2
replies
1.9k
views
Comment: C: Get nonoverlapping regions of two bed files
3.3 years ago by vctrm67 ▴ 40
0
votes
5
replies
1.9k
views
Get nonoverlapping regions of two bed files
bed
3.3 years ago by vctrm67 ▴ 40
1
vote
5
replies
1.4k
views
Calling CNVs without a normal
CNV
updated 3.4 years ago by 20 • written 3.7 years ago by ▴ 40
0
votes
1
reply
1.1k
views
Comment: C: Parallelizing GATK4 tools
3.4 years ago by vctrm67 ▴ 40
0
votes
1
reply
1.1k
views
Comment: C: Parallelizing GATK4 tools
3.4 years ago by vctrm67 ▴ 40
0
votes
0
replies
1.1k
views
Comment: C: Parallelizing GATK4 tools
3.4 years ago by vctrm67 ▴ 40
1
vote
7
replies
1.1k
views
Parallelizing GATK4 tools
GATK
3.4 years ago by vctrm67 ▴ 40
0
votes
1
reply
648
views
Rename "SM" tag in read group only
GATK
updated 2.2 years ago by ▴ 120 • written 3.5 years ago by ▴ 40
0
votes
0
replies
1.2k
views
Calling germline SNPs using GATK HaplotypeCaller in a single sample
GATK
3.5 years ago by vctrm67 ▴ 40
0
votes
1
reply
1.2k
views
Comment: C: Get intersection of files occuring in at least 2 files?
3.5 years ago by vctrm67 ▴ 40
0
votes
1
reply
1.2k
views
Comment: C: Get intersection of files occuring in at least 2 files?
3.5 years ago by vctrm67 ▴ 40
0
votes
1
reply
494
views
Why are BED files necessary for somatic calling?
somatic
3.6 years ago by vctrm67 ▴ 40
115 results • Page 1 of 3
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