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2
votes
1
reply
141
views
  Getting sample IDs from dbGaP SRR?
dbgap
updated 4 months ago by 20 • written 5 months ago by ▴ 20
0
votes
0
replies
141
views
  Extract VCF of tumor variants from a list of SNPs
mutect2 SNP
5 months ago by vctrm67 ▴ 20
0
votes
1
reply
303
views
Comment:  C: CNVKit for unmatched tumor-only WGS samples
5 months ago by vctrm67 ▴ 20
0
votes
5
replies
303
views
  CNVKit for unmatched tumor-only WGS samples
cnvkit
updated 5 days ago by 5.4k • written 5 months ago by ▴ 20
0
votes
1
reply
303
views
Comment:  C: CNVKit for unmatched tumor-only WGS samples
5 months ago by vctrm67 ▴ 20
0
votes
2
replies
298
views
  Mutect2 missing mutations
mutect
updated 6 months ago by 34k • written 6 months ago by ▴ 20
0
votes
0
replies
189
views
  SV calling with duplication amplification
sv
7 months ago by vctrm67 ▴ 20
0
votes
1
reply
412
views
Comment:  C: Interpreting GISTIC2 output
8 months ago by vctrm67 ▴ 20
0
votes
3
replies
412
views
  Interpreting GISTIC2 output
GISTIC
8 months ago by vctrm67 ▴ 20
0
votes
1
reply
307
views
  HRD score LST?
cnv
updated 8 months ago by 34k • written 8 months ago by ▴ 20
0
votes
1
reply
241
views
Comment:  C: Amplification over deletion/Deletion over amplification?
8 months ago by vctrm67 ▴ 20
0
votes
3
replies
241
views
  Amplification over deletion/Deletion over amplification?
gistic
updated 8 months ago by 74k • written 8 months ago by ▴ 20
4
votes
3
replies
373
views
  bedtools sort doesn't properly sort
bedtools
updated 9 months ago by 13k • written 9 months ago by ▴ 20
0
votes
0
replies
1.4k
views
Comment:  C: GISTIC 2.0 markers
9 months ago by vctrm67 ▴ 20
0
votes
1
reply
1.4k
views
Comment:  C: GISTIC 2.0 markers
9 months ago by vctrm67 ▴ 20
0
votes
0
replies
226
views
  bedtools closest default?
bedtools
9 months ago by vctrm67 ▴ 20
0
votes
0
replies
936
views
Comment:  C: GISTIC 2.0 for sequencing data
9 months ago by vctrm67 ▴ 20
0
votes
1
reply
354
views
Comment:  C: Somatic SNVs vs. Germline SNPs for allele-specific copy number analysis
9 months ago by vctrm67 ▴ 20
0
votes
1
reply
354
views
Comment:  C: Somatic SNVs vs. Germline SNPs for allele-specific copy number analysis
9 months ago by vctrm67 ▴ 20
0
votes
1
reply
354
views
Comment:  C: Somatic SNVs vs. Germline SNPs for allele-specific copy number analysis
9 months ago by vctrm67 ▴ 20
0
votes
1
reply
354
views
Comment:  C: Somatic SNVs vs. Germline SNPs for allele-specific copy number analysis
9 months ago by vctrm67 ▴ 20
3
votes
9
replies
354
views
  Somatic SNVs vs. Germline SNPs for allele-specific copy number analysis
CNV
9 months ago by vctrm67 ▴ 20
0
votes
2
replies
936
views
Comment:  C: GISTIC 2.0 for sequencing data
9 months ago by vctrm67 ▴ 20
0
votes
1
reply
936
views
Comment:  C: GISTIC 2.0 for sequencing data
9 months ago by vctrm67 ▴ 20
0
votes
7
replies
936
views
  GISTIC 2.0 for sequencing data
gistic sequencing wgs cnv cna
9 months ago by vctrm67 ▴ 20
0
votes
3
replies
358
views
  Calling CNVs using a single tumor sample
cnv
9 months ago by vctrm67 ▴ 20
0
votes
0
replies
207
views
  CNV segmentation purpose
cnv
9 months ago by vctrm67 ▴ 20
1
vote
4
replies
230
views
  Detecting aneuploidy in sequencing data or copy number profile?
ngs
updated 9 months ago by 12k • written 9 months ago by ▴ 20
0
votes
0
replies
230
views
Comment:  A: Detecting aneuploidy in sequencing data or copy number profile?
9 months ago by vctrm67 ▴ 20
0
votes
0
replies
230
views
Comment:  C: Detecting aneuploidy in sequencing data or copy number profile?
9 months ago by vctrm67 ▴ 20
0
votes
0
replies
227
views
  ASCAT CN vs SNP probes
ascat
10 months ago by vctrm67 ▴ 20
0
votes
0
replies
319
views
  lofreq empty output?
lofreq
updated 10 months ago by 20 • written 12 months ago by ▴ 20
0
votes
2
replies
833
views
  Calculating HRD score
HRD
10 months ago by vctrm67 ▴ 20
0
votes
1
reply
296
views
  Number of probes per segment from ASCAT SNP array output?
ascat
10 months ago by vctrm67 ▴ 20
0
votes
0
replies
403
views
Comment:  C: TCGA CNV data reformatting
10 months ago by vctrm67 ▴ 20
0
votes
4
replies
403
views
  TCGA CNV data reformatting
CNV
updated 11 months ago by ▴ 510 • written 11 months ago by ▴ 20
0
votes
0
replies
403
views
Comment:  C: TCGA CNV data reformatting
11 months ago by vctrm67 ▴ 20
0
votes
1
reply
278
views
  bcftools isec question?
bcftools
updated 12 months ago by 136k • written 12 months ago by ▴ 20
0
votes
2
replies
512
views
Comment:  C: Get nonoverlapping regions of two bed files
12 months ago by vctrm67 ▴ 20
0
votes
5
replies
512
views
  Get nonoverlapping regions of two bed files
bed
12 months ago by vctrm67 ▴ 20
1
vote
5
replies
440
views
  Calling CNVs without a normal
CNV
updated 13 months ago by 20 • written 17 months ago by ▴ 20
0
votes
1
reply
323
views
Comment:  C: Parallelizing GATK4 tools
13 months ago by vctrm67 ▴ 20
0
votes
1
reply
323
views
Comment:  C: Parallelizing GATK4 tools
13 months ago by vctrm67 ▴ 20
0
votes
0
replies
323
views
Comment:  C: Parallelizing GATK4 tools
13 months ago by vctrm67 ▴ 20
1
vote
7
replies
323
views
  Parallelizing GATK4 tools
GATK
13 months ago by vctrm67 ▴ 20
0
votes
0
replies
194
views
  Rename "SM" tag in read group only
GATK
14 months ago by vctrm67 ▴ 20
0
votes
0
replies
648
views
  Calling germline SNPs using GATK HaplotypeCaller in a single sample
GATK
14 months ago by vctrm67 ▴ 20
0
votes
1
reply
449
views
Comment:  C: Get intersection of files occuring in at least 2 files?
15 months ago by vctrm67 ▴ 20
0
votes
1
reply
449
views
Comment:  C: Get intersection of files occuring in at least 2 files?
15 months ago by vctrm67 ▴ 20
0
votes
1
reply
254
views
  Why are BED files necessary for somatic calling?
somatic
15 months ago by vctrm67 ▴ 20
115 results • Page 1 of 3
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