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1
vote
1
reply
1.5k
views
lofreq empty output?
lofreq
updated 3.8 years ago by ▴ 60 • written 5.4 years ago by ▴ 90
1
vote
4
replies
4.2k
views
Interpreting GISTIC2 output
GISTIC
updated 4.0 years ago by ★ 1.4k • written 5.1 years ago by ▴ 90
0
votes
2
replies
1.7k
views
HRD score LST?
cnv
updated 4.2 years ago by ★ 1.1k • written 5.1 years ago by ▴ 90
2
votes
1
reply
967
views
Getting sample IDs from dbGaP SRR?
dbgap
updated 4.7 years ago by 20 • written 4.8 years ago by ▴ 90
0
votes
0
replies
672
views
Extract VCF of tumor variants from a list of SNPs
mutect2 SNP
4.8 years ago by vctrm67 ▴ 90
0
votes
1
reply
3.8k
views
Comment: C: CNVKit for unmatched tumor-only WGS samples
4.8 years ago by vctrm67 ▴ 90
1
vote
7
replies
3.8k
views
CNVKit for unmatched tumor-only WGS samples
cnvkit
updated 7 months ago by 45k • written 4.8 years ago by ▴ 90
0
votes
1
reply
3.8k
views
Comment: C: CNVKit for unmatched tumor-only WGS samples
4.8 years ago by vctrm67 ▴ 90
0
votes
2
replies
1.4k
views
Mutect2 missing mutations
mutect
updated 4.9 years ago by 45k • written 4.9 years ago by ▴ 90
0
votes
0
replies
818
views
SV calling with duplication amplification
sv
5.0 years ago by vctrm67 ▴ 90
0
votes
1
reply
4.2k
views
Comment: C: Interpreting GISTIC2 output
5.1 years ago by vctrm67 ▴ 90
0
votes
1
reply
1.3k
views
Comment: C: Amplification over deletion/Deletion over amplification?
5.1 years ago by vctrm67 ▴ 90
0
votes
3
replies
1.3k
views
Amplification over deletion/Deletion over amplification?
gistic
updated 5.1 years ago by 89k • written 5.1 years ago by ▴ 90
9
votes
3
replies
5.3k
views
bedtools sort doesn't properly sort
bedtools
updated 5.1 years ago by 14k • written 5.1 years ago by ▴ 90
0
votes
0
replies
4.7k
views
Comment: C: GISTIC 2.0 markers
5.1 years ago by vctrm67 ▴ 90
0
votes
1
reply
4.7k
views
Comment: C: GISTIC 2.0 markers
5.1 years ago by vctrm67 ▴ 90
0
votes
0
replies
908
views
bedtools closest default?
bedtools
5.1 years ago by vctrm67 ▴ 90
0
votes
0
replies
4.7k
views
Comment: C: GISTIC 2.0 for sequencing data
5.2 years ago by vctrm67 ▴ 90
0
votes
1
reply
2.1k
views
Comment: C: Somatic SNVs vs. Germline SNPs for allele-specific copy number analysis
5.2 years ago by vctrm67 ▴ 90
0
votes
1
reply
2.1k
views
Comment: C: Somatic SNVs vs. Germline SNPs for allele-specific copy number analysis
5.2 years ago by vctrm67 ▴ 90
0
votes
1
reply
2.1k
views
Comment: C: Somatic SNVs vs. Germline SNPs for allele-specific copy number analysis
5.2 years ago by vctrm67 ▴ 90
0
votes
1
reply
2.1k
views
Comment: C: Somatic SNVs vs. Germline SNPs for allele-specific copy number analysis
5.2 years ago by vctrm67 ▴ 90
3
votes
9
replies
2.1k
views
Somatic SNVs vs. Germline SNPs for allele-specific copy number analysis
CNV
5.2 years ago by vctrm67 ▴ 90
0
votes
2
replies
4.7k
views
Comment: C: GISTIC 2.0 for sequencing data
5.2 years ago by vctrm67 ▴ 90
0
votes
1
reply
4.7k
views
Comment: C: GISTIC 2.0 for sequencing data
5.2 years ago by vctrm67 ▴ 90
0
votes
7
replies
4.7k
views
GISTIC 2.0 for sequencing data
gistic sequencing wgs cnv cna
5.2 years ago by vctrm67 ▴ 90
1
vote
3
replies
1.4k
views
Calling CNVs using a single tumor sample
cnv
5.2 years ago by vctrm67 ▴ 90
0
votes
0
replies
651
views
CNV segmentation purpose
cnv
5.2 years ago by vctrm67 ▴ 90
1
vote
4
replies
1.3k
views
Detecting aneuploidy in sequencing data or copy number profile?
ngs
updated 5.2 years ago by 13k • written 5.2 years ago by ▴ 90
0
votes
0
replies
1.3k
views
Comment: A: Detecting aneuploidy in sequencing data or copy number profile?
5.2 years ago by vctrm67 ▴ 90
0
votes
0
replies
1.3k
views
Comment: C: Detecting aneuploidy in sequencing data or copy number profile?
5.2 years ago by vctrm67 ▴ 90
0
votes
0
replies
806
views
ASCAT CN vs SNP probes
ascat
5.3 years ago by vctrm67 ▴ 90
0
votes
3
replies
2.8k
views
Calculating HRD score
HRD
updated 4.0 years ago by • 0 • written 5.3 years ago by ▴ 90
0
votes
1
reply
1.2k
views
Number of probes per segment from ASCAT SNP array output?
ascat
5.3 years ago by vctrm67 ▴ 90
0
votes
0
replies
2.1k
views
Comment: C: TCGA CNV data reformatting
5.3 years ago by vctrm67 ▴ 90
0
votes
4
replies
2.1k
views
TCGA CNV data reformatting
CNV
updated 5.3 years ago by ▴ 550 • written 5.3 years ago by ▴ 90
0
votes
0
replies
2.1k
views
Comment: C: TCGA CNV data reformatting
5.3 years ago by vctrm67 ▴ 90
1
vote
1
reply
1.2k
views
bcftools isec question?
bcftools
updated 5.4 years ago by 166k • written 5.4 years ago by ▴ 90
0
votes
2
replies
3.6k
views
Comment: C: Get nonoverlapping regions of two bed files
5.4 years ago by vctrm67 ▴ 90
2
votes
5
replies
3.6k
views
Get nonoverlapping regions of two bed files
bed
5.4 years ago by vctrm67 ▴ 90
1
vote
5
replies
2.2k
views
Calling CNVs without a normal
CNV
updated 5.5 years ago by 20 • written 5.8 years ago by ▴ 90
0
votes
1
reply
2.0k
views
Comment: C: Parallelizing GATK4 tools
5.5 years ago by vctrm67 ▴ 90
0
votes
1
reply
2.0k
views
Comment: C: Parallelizing GATK4 tools
5.5 years ago by vctrm67 ▴ 90
0
votes
0
replies
2.0k
views
Comment: C: Parallelizing GATK4 tools
5.5 years ago by vctrm67 ▴ 90
1
vote
7
replies
2.0k
views
Parallelizing GATK4 tools
GATK
5.5 years ago by vctrm67 ▴ 90
0
votes
1
reply
1.1k
views
Rename "SM" tag in read group only
GATK
updated 4.3 years ago by ▴ 170 • written 5.6 years ago by ▴ 90
0
votes
0
replies
1.5k
views
Calling germline SNPs using GATK HaplotypeCaller in a single sample
GATK
5.6 years ago by vctrm67 ▴ 90
0
votes
1
reply
2.0k
views
Comment: C: Get intersection of files occuring in at least 2 files?
5.6 years ago by vctrm67 ▴ 90
0
votes
1
reply
2.0k
views
Comment: C: Get intersection of files occuring in at least 2 files?
5.6 years ago by vctrm67 ▴ 90
0
votes
1
reply
724
views
Why are BED files necessary for somatic calling?
somatic
5.6 years ago by vctrm67 ▴ 90
115 results • Page 1 of 3
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