Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
2
votes
3
replies
295
views
6 follow
How to summarize the expression of a gene when having expression data from different transcripts of that gene
rnaseq expression
updated 6 weeks ago by 16k • written 6 weeks ago by ▴ 90
0
votes
0
replies
234
views
SNV occuring 2 fold more in forward than in reverse reads should be filtered?
VariantCalling
14 months ago by jeni ▴ 90
0
votes
0
replies
4.0k
views
Comment: Comment: MAGERI: a software tool for calling rare variants and detecting circulating tumo
22 months ago by jeni ▴ 90
10
votes
5
replies
4.6k
views
Remove supplementary alignments from a bam file
alignment
updated 2.0 years ago by • 0 • written 2.9 years ago by ▴ 90
0
votes
1
reply
493
views
How to statistically determine if a mutation has an impact on expression individually for one patient
RNA-Seq variant calling
2.2 years ago by jeni ▴ 90
0
votes
1
reply
494
views
Comment: C: Correct number of detected variants by coverage
2.3 years ago by jeni ▴ 90
0
votes
3
replies
494
views
Correct number of detected variants by coverage
variant calling
2.3 years ago by jeni ▴ 90
0
votes
0
replies
740
views
Comment: C: Differencial expression analysis between groups determined by two variables
2.5 years ago by jeni ▴ 90
0
votes
3
replies
740
views
Differencial expression analysis between groups determined by two variables
expression microarray clustering
2.5 years ago by jeni ▴ 90
0
votes
1
reply
1.1k
views
Comment: C: Does it make sense to transform expression data to zscore after performing RMA?
2.5 years ago by jeni ▴ 90
0
votes
1
reply
1.1k
views
Comment: C: Does it make sense to transform expression data to zscore after performing RMA?
2.5 years ago by jeni ▴ 90
3
votes
6
replies
1.1k
views
Does it make sense to transform expression data to zscore after performing RMA?
microarray expression
updated 10 months ago by • 0 • written 2.5 years ago by ▴ 90
0
votes
0
replies
562
views
Is it right to use a low amount of bumphunter permutations?
methylation microarray DMR
2.5 years ago by jeni ▴ 90
0
votes
1
reply
2.2k
views
Comment: C: HOMER hg19 not found in config.txt
2.5 years ago by jeni ▴ 90
0
votes
0
replies
454
views
How to deal with SNPs and INDELs called in hypermutated regions?
variant calling
2.6 years ago by jeni ▴ 90
0
votes
0
replies
469
views
Where to find a list of hypermutated regions for hg19 assembly?
variant calling
2.7 years ago by jeni ▴ 90
2
votes
1
reply
743
views
How to know which genes are favouring or inactivating a pathway in a gene set enrichment analysis
enrichment analysis
updated 2.7 years ago by ★ 2.4k • written 2.7 years ago by ▴ 90
0
votes
0
replies
820
views
Reduce GRanges by different lengths of overlapping, deppending on each compared intervals
GRanges
2.8 years ago by jeni ▴ 90
1
vote
3
replies
2.2k
views
HOMER hg19 not found in config.txt
HOMER motif finding
updated 19 months ago by • 0 • written 2.8 years ago by ▴ 90
0
votes
0
replies
953
views
Comment: C: Best practice to find regulatory motifs in a set of sequences
2.8 years ago by jeni ▴ 90
0
votes
1
reply
953
views
Comment: C: Best practice to find regulatory motifs in a set of sequences
2.8 years ago by jeni ▴ 90
0
votes
1
reply
953
views
Comment: C: Best practice to find regulatory motifs in a set of sequences
2.8 years ago by jeni ▴ 90
3
votes
9
replies
953
views
Best practice to find regulatory motifs in a set of sequences
regulatory motif finding
updated 2.8 years ago by ★ 23k • written 2.8 years ago by ▴ 90
0
votes
1
reply
953
views
Comment: C: Best practice to find regulatory motifs in a set of sequences
2.8 years ago by jeni ▴ 90
0
votes
1
reply
923
views
Comment: C: Best way to call differencially methylated positions taking into account results
2.8 years ago by jeni ▴ 90
3
votes
3
replies
923
views
Best way to call differencially methylated positions taking into account results from both Beta and M values
methylation
updated 2.8 years ago by ★ 2.4k • written 2.8 years ago by ▴ 90
0
votes
1
reply
9.5k
views
Comment: C: Beta-values, M-values and thresholds on effect size
2.8 years ago by jeni ▴ 90
2
votes
5
replies
953
views
VEP is returning MOTIF_NAME values not recognised by Ensembl
snp Ensembl VEP
updated 2.8 years ago by ▴ 270 • written 2.8 years ago by ▴ 90
0
votes
0
replies
527
views
Download all positions where a motif exist from the genome browser
genome
2.8 years ago by jeni ▴ 90
0
votes
1
reply
953
views
Comment: C: VEP is returning MOTIF_NAME values not recognised by Ensembl
2.8 years ago by jeni ▴ 90
0
votes
0
replies
515
views
Comment: C: Pathways analysis taking into account the number of times a gene is present amon
2.9 years ago by jeni ▴ 90
0
votes
1
reply
515
views
Comment: C: Pathways analysis taking into account the number of times a gene is present amon
2.9 years ago by jeni ▴ 90
0
votes
1
reply
515
views
Comment: C: Pathways analysis taking into account the number of times a gene is present amon
2.9 years ago by jeni ▴ 90
0
votes
6
replies
515
views
Pathways analysis taking into account the number of times a gene is present among several patients
snp
2.9 years ago by jeni ▴ 90
0
votes
0
replies
704
views
Comment: C: filter_vep not properly filtering
2.9 years ago by jeni ▴ 90
2
votes
2
replies
965
views
Read genotype information with VariantAnnotation
SNP R vcf Bioconductor VariantAnnotation
updated 2.9 years ago by 3.5k • written 2.9 years ago by ▴ 90
0
votes
2
replies
704
views
filter_vep not properly filtering
snp
updated 2.9 years ago by 38k • written 2.9 years ago by ▴ 90
0
votes
0
replies
2.4k
views
Comment: C: Parse VEP VCF with variantAnnotation
2.9 years ago by jeni ▴ 90
5
votes
6
replies
2.4k
views
Parse VEP VCF with variantAnnotation
snp R
2.9 years ago by jeni ▴ 90
0
votes
0
replies
2.4k
views
Comment: C: Parse VEP VCF with variantAnnotation
2.9 years ago by jeni ▴ 90
0
votes
1
reply
1.2k
views
Comment: C: Is it right to combine multiple runs downloaded from SRA?
2.9 years ago by jeni ▴ 90
1
vote
4
replies
1.2k
views
Is it right to combine multiple runs downloaded from SRA?
next-gen
2.9 years ago by jeni ▴ 90
0
votes
4
replies
482
views
How to remove reads supporting the same fragment that other reads support
Assembly genome
3.0 years ago by jeni ▴ 90
0
votes
0
replies
482
views
Comment: C: How to remove reads supporting the same fragment that other reads support
3.0 years ago by jeni ▴ 90
2
votes
6
replies
2.0k
views
Extract reads with insert size 0 from a bam file
alignment
updated 3.0 years ago by 8.6k • written 3.0 years ago by ▴ 90
0
votes
0
replies
2.0k
views
Comment: C: Extract reads with insert size 0 from a bam file
3.0 years ago by jeni ▴ 90
0
votes
1
reply
2.0k
views
Comment: C: Extract reads with insert size 0 from a bam file
3.0 years ago by jeni ▴ 90
0
votes
0
replies
682
views
Comment: C: Transform genomic intervals to genomic positions in an R dataframe
updated 3.0 years ago by 84k • written 3.0 years ago by ▴ 90
0
votes
1
reply
682
views
Comment: C: Transform genomic intervals to genomic positions in an R dataframe
3.0 years ago by jeni ▴ 90
0
votes
5
replies
682
views
Transform genomic intervals to genomic positions in an R dataframe
R
3.0 years ago by jeni ▴ 90
55 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6