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307
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Nucleotide substitution model and neighbor-joining tree
phylogeny substitution mega neighbor-joining modeltest
5 months ago by poecile.pal ▴ 50
0
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0
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199
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TrN (df = k+5) and TrNe (df = k+2) - which of these Tamura-Nei model variants is used in MEGAx?
Tamura-Nei phylogeny phangorn modelTest mega
5 months ago by poecile.pal ▴ 50
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0
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352
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Comment: Comment: wrong quality plots in fastqc output
6 months ago by poecile.pal ▴ 50
0
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1
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352
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Comment: Comment: wrong quality plots in fastqc output
6 months ago by poecile.pal ▴ 50
2
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3
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352
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wrong quality plots in fastqc output
samtools fastqc fastq wgsim
updated 3 months ago by 40k • written 6 months ago by ▴ 50
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0
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709
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Comment: Comment: reference for freebayes or samtools mpileup after extracting chromosome from ali
6 months ago by poecile.pal ▴ 50
2
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3
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709
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reference for freebayes or samtools mpileup after extracting chromosome from alignment
samtools SNP alignment freebayes
updated 3 months ago by 40k • written 6 months ago by ▴ 50
0
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1
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469
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Why 0/0 genotype refers to SNP and ALT != REF (in vcf file after freebayes)
genotype vcf freebayes SNP vcflib
6 months ago by poecile.pal ▴ 50
0
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0
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469
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Answer: Answer: Why 0/0 genotype refers to SNP and ALT != REF (in vcf file after freebayes)
6 months ago by poecile.pal ▴ 50
1
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0
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709
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Answer: Answer: reference for freebayes or samtools mpileup after extracting chromosome from ali
6 months ago by poecile.pal ▴ 50
1
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0
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833
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Comment: Comment: How not to merge R1 and R2 pair-end files in multiqc report
7 months ago by poecile.pal ▴ 50
2
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4
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833
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How not to merge R1 and R2 pair-end files in multiqc report
multiqc fastqc
7 months ago by poecile.pal ▴ 50
0
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0
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833
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Comment: Comment: How not to merge R1 and R2 pair-end files in multiqc report
7 months ago by poecile.pal ▴ 50
1
vote
1
reply
431
views
bwa: reads aligned concordantly exactly 1 time
bowtie2 samtools hisat2 alignment bwa
7 months ago by poecile.pal ▴ 50
1
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0
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431
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Answer: Answer: bwa: reads aligned concordantly exactly 1 time
7 months ago by poecile.pal ▴ 50
0
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0
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637
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Comment: Comment: hisat2-map error: "gzip: stdout: Broken pipe, (ERR): hisat2-align died with sign
9 months ago by poecile.pal ▴ 50
0
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2
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637
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hisat2-map error: "gzip: stdout: Broken pipe, (ERR): hisat2-align died with signal 9 (KILL)"
fastq gzip hisat2
updated 4 months ago by 40k • written 9 months ago by ▴ 50
0
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0
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278
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calculate meandepths for CDSs after mapping transcriptome reads to the genome
gtf samtools alignment sam
updated 3 months ago by 40k • written 13 months ago by ▴ 50
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0
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1.6k
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Comment: Comment: gtf file without exons
13 months ago by poecile.pal ▴ 50
0
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1
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1.6k
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Comment: Comment: gtf file without exons
13 months ago by poecile.pal ▴ 50
0
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1
reply
1.6k
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Comment: Comment: gtf file without exons
13 months ago by poecile.pal ▴ 50
0
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1
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1.6k
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Comment: Comment: gtf file without exons
13 months ago by poecile.pal ▴ 50
0
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1
reply
1.6k
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Comment: Comment: gtf file without exons
13 months ago by poecile.pal ▴ 50
4
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10
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1.6k
views
gtf file without exons
gtf exons annotation augustus hisat2
updated 13 months ago by ★ 1.2k • written 13 months ago by ▴ 50
0
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0
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870
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Comment: Comment: SNP annotation for de novo transcriptome data
18 months ago by poecile.pal ▴ 50
0
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0
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23k
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Comment: Comment: How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
18 months ago by poecile.pal ▴ 50
0
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1
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23k
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Comment: Comment: How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
18 months ago by poecile.pal ▴ 50
0
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0
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248
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GATK workflow for de novo transcriptome assembly of non-model organism
transcriptome GATK SNP samtools non-model-organism
updated 3 months ago by 40k • written 18 months ago by ▴ 50
2
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2
replies
736
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Using transdecoder to filter a fasta file with preserving whole transcripts
transcriptome assembly rna-seq fasta transdecoder
updated 18 months ago by 21k • written 18 months ago by ▴ 50
2
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1
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736
views
Answer: Answer: Using transdecoder to filter a fasta file with preserving whole transcripts
18 months ago by poecile.pal ▴ 50
0
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1
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896
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Comment: Comment: Extract the longest isoform from transcripts.fasta (rnaSPAdes output)
18 months ago by poecile.pal ▴ 50
0
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0
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896
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Comment: Comment: Extract the longest isoform from transcripts.fasta (rnaSPAdes output)
18 months ago by poecile.pal ▴ 50
5
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5
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896
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Extract the longest isoform from transcripts.fasta (rnaSPAdes output)
transcriptome isoform assembly rna-seq fasta
updated 18 months ago by ▴ 680 • written 18 months ago by ▴ 50
1
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1
reply
365
views
rnaSPAdes hybrid assembly and YAML file
SPAdes assembly rnaSPAdes rna-seq hybrid
19 months ago by poecile.pal ▴ 50
0
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0
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365
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Answer: Answer: rnaSPAdes hybrid assembly and YAML file
19 months ago by poecile.pal ▴ 50
0
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0
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1.3k
views
Comment: Comment: collapseReplicates in DESeq2 when the number of technical replicates per biosamp
22 months ago by poecile.pal ▴ 50
0
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1
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1.3k
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Comment: Comment: collapseReplicates in DESeq2 when the number of technical replicates per biosamp
22 months ago by poecile.pal ▴ 50
3
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4
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1.3k
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collapseReplicates in DESeq2 when the number of technical replicates per biosample is different
collapseReplicates DESeq2 RNASeq expression DEG
22 months ago by poecile.pal ▴ 50
0
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0
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384
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Tools for the reconstruction of demographic history from genome sequences FOR POLYPLOIDS
MSMC SMC demographics genome polyploids
24 months ago by poecile.pal ▴ 50
0
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0
replies
387
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Download intergenic spacers between specific genes for all findings in genbank
seqinr R genbank search phylogeny
2.0 years ago by poecile.pal ▴ 50
0
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0
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1.2k
views
Comment: Comment: DRIMSeq with more than 2 categories in the group
2.0 years ago by poecile.pal ▴ 50
0
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0
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1.2k
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Comment: Comment: DRIMSeq with more than 2 categories in the group
2.0 years ago by poecile.pal ▴ 50
1
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5
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3.0k
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Problems with installing adegenet
R error software adegenet gene
2.4 years ago by poecile.pal ▴ 50
0
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0
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3.0k
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Answer: Answer: Problems with installing adegenet
2.4 years ago by poecile.pal ▴ 50
0
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0
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3.0k
views
Comment: Comment: Problems with installing adegenet
2.4 years ago by poecile.pal ▴ 50
0
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0
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3.0k
views
Comment: Comment: Problems with installing adegenet
2.4 years ago by poecile.pal ▴ 50
0
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0
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1.2k
views
Comment: C: Trying to get sequence using sequinr generates error "Error in readLines(socket,
2.6 years ago by poecile.pal ▴ 50
1
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2
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1.2k
views
Trying to get sequence using sequinr generates error "Error in readLines(socket, n = nelem, ok = FALSE)"
gene software error sequence R genome
2.6 years ago by poecile.pal ▴ 50
0
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4
replies
1.2k
views
DRIMSeq with more than 2 categories in the group
RNA-Seq R software error
2.0 years ago by poecile.pal ▴ 50
0
votes
0
replies
997
views
Error in alpha * 100 : non-numeric argument to binary operator (problem with stageR)
RNA-Seq sequencing software error rna-seq R
3.5 years ago by poecile.pal ▴ 50
54 results • Page 1 of 2
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