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Using Principal Components may muddle the detecting power of a GWAS?
q-value covariates genomic-inflation pca gwas
updated 8 weeks ago by ▴ 480 • written 8 weeks ago by • 0
0
votes
0
replies
251
views
Significant SNPs with the same effect in FarmCPU
effect-size gwas FarmCPU likage-disequilibrium
9 weeks ago by AndrMod • 0
0
votes
1
reply
837
views
GWAS on traits non-normally distributed
normality GWAS phenotypes
updated 9 months ago by 89k • written 10 months ago by • 0
0
votes
0
replies
354
views
Outputs from FarmCPU (rMPV package)
R FarmCPU GWAS
15 months ago by AndrMod • 0
0
votes
0
replies
736
views
Genetic distance in cM from VCF of non-reference species to run Beagle
plink beagle vcf
updated 21 months ago by 45k • written 21 months ago by • 0
0
votes
5
replies
1.4k
views
Subsetting Vcf based on CHROM and POSS
subsetting vcfR vcf
updated 3.1 years ago by 166k • written 3.1 years ago by • 0
0
votes
6
replies
2.5k
views
Mince a vcf into n bins of a given range
vcf binning
updated 3.4 years ago by 36k • written 3.4 years ago by • 0
0
votes
4
replies
1.3k
views
Modifying Vcf field into R
R vcf replacement
updated 3.7 years ago by 12k • written 3.7 years ago by • 0
4
votes
8
replies
2.1k
views
Subset a Vcf
vcf vcftools
3.7 years ago by AndrMod • 0
2
votes
5
replies
1.6k
views
Issue installing Plink
Plink
3.9 years ago by AndrMod • 0
1
vote
5
replies
2.8k
views
Can't find fstat() and pairwise.fstat()
R snp
updated 4.6 years ago by ★ 3.0k • written 4.6 years ago by • 0
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