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93
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19
replies
60k
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18 follow
What Is A Good Phylogenetic Tree Display Program For Large Data Sets?
phylogenetics-tree
updated 10 months ago by 43k • written 13.6 years ago by ★ 2.6k
1
vote
6
replies
4.0k
views
How can I fix picard error: Sequences at index 0 don't match
picard GATK
5.5 years ago by Niek De Klein ★ 2.6k
10
votes
9
replies
8.6k
views
How to convert fastq to cram, and from cram back to fastq
cram fastq
updated 5.7 years ago by 16k • written 5.7 years ago by ★ 2.6k
2
votes
2
replies
1.9k
views
GaTK reverse select interval list
GATK intervallist
updated 6.6 years ago by 161k • written 6.6 years ago by ★ 2.6k
4
votes
3
replies
2.1k
views
Bedtools merge only part of feature that overlaps, not whole feature
bedtools merge bed
updated 6.7 years ago by 35k • written 6.7 years ago by ★ 2.6k
6
votes
3
replies
8.2k
views
Hisat R strandness aligning same strand as F strandness, how to do it correctly?
Hisat2 rna-seq alignment ribo-zero strandness
updated 6.8 years ago by ▴ 30 • written 7.8 years ago by ★ 2.6k
0
votes
4
replies
3.2k
views
How to add info to the sample columns of a VCF?
bcftools vcf
7.5 years ago by Niek De Klein ★ 2.6k
7
votes
4
replies
8.0k
views
How to remove non-unique mapping reads with Hisat?
alignment RNA-seq hisat
updated 16 months ago by 43k • written 8.8 years ago by ★ 2.6k
0
votes
2
replies
1.5k
views
Recognize rRNA remove protocol from gene expression profile
RNA-Seq ribozero poly-a
updated 8.4 years ago by 11k • written 8.4 years ago by ★ 2.6k
4
votes
2
replies
2.2k
views
biomaRt LPR region to position giving different results than I expect (using R)
ensembl biomaRt
updated 20 months ago by 43k • written 8.6 years ago by ★ 2.6k
2
votes
1
reply
4.9k
views
Showing both strands in IGV, or if not possible what genome viewer is good for strand specific experiments?
IGV genome-browser
updated 19 months ago by 43k • written 8.6 years ago by ★ 2.6k
5
votes
8
replies
3.5k
views
Interperting k-mer plot of FastQC, how can I find out where k-mer enrichment comes from?
fastqc next-gen k-mer
updated 19 months ago by 43k • written 8.6 years ago by ★ 2.6k
31
votes
1
reply
14k
views
What does secondary (and some other fields) mean in flagstat output?
flagstat samtools
updated 16 months ago by 43k • written 8.8 years ago by ★ 2.6k
7
votes
3
replies
5.2k
views
How does a skipped region from a CIGAR string (N) look in the alignment?
CIGAR
updated 15 months ago by 43k • written 8.9 years ago by ★ 2.6k
10
votes
1
reply
3.5k
views
RNA-SeQC, EVER-seq, RSeQC and CollectRnaSeqMetrics, which to use and *why*?
RNA-Seq qc
updated 20 months ago by 43k • written 8.9 years ago by ★ 2.6k
8
votes
2
replies
11k
views
How To Convert .Mgf (Mascot Generic File) To A Format (Mzxml?) So That They Can Be Used With Maxquant?
mass-spec
updated 9.3 years ago by ▴ 90 • written 10.6 years ago by ★ 2.6k
20
votes
7
replies
4.4k
views
Program Or Script To Go From Partial Protein Sequence To Dna
translation protein translation coordinates
updated 10.0 years ago by 20 • written 13.5 years ago by ★ 2.6k
7
votes
8
replies
5.9k
views
Windows Cmd Not Responding With Python Blastall 2.2.17
python blast windows ncbi biopython
updated 10.2 years ago by 6.0k • written 13.5 years ago by ★ 2.6k
24
votes
8
replies
31k
views
When Using Heatmap.2 From R To Make A Heatmap Of Microarray Data, How Are The Genes Clustered?
microarray
updated 10.2 years ago by 104k • written 10.3 years ago by ★ 2.6k
3
votes
2
replies
2.3k
views
How To Prevent Interproscan Webservice From Giving An Http Error After 120 Sequences?
python webservice
updated 10.9 years ago by ▴ 440 • written 10.9 years ago by ★ 2.6k
2
votes
2
replies
2.5k
views
How Is The Word Score For The Look-Up Table Determined For Blast?
blast
11.5 years ago by Niek De Klein ★ 2.6k
5
votes
7
replies
5.8k
views
Blast 2.2.24+ Database Error
blast blast memory
12.0 years ago by Niek De Klein ★ 2.6k
115
votes
21
replies
113k
views
14 follow
When To Choose Python Over Perl (And Vice Versa)?
python perl comparison
updated 12.1 years ago by ▴ 30 • written 12.5 years ago by ★ 2.6k
9
votes
4
replies
4.4k
views
How To Get All Proteins Smaller Than 200 Amino Acids Out Of Ncbi Nr Database?
ncbi fasta protein
updated 13 months ago by 43k • written 12.1 years ago by ★ 2.6k
6
votes
2
replies
3.3k
views
From Where In The Mzml File Does Toppview Get The Retention Time?
updated 12.2 years ago by ★ 1.7k • written 12.2 years ago by ★ 2.6k
8
votes
3
replies
4.3k
views
How Can I Get The Retention Time Of An Ms/Ms Precursor Out Of A Mzml File Using Pymzml?
python
updated 12.2 years ago by ★ 1.7k • written 12.2 years ago by ★ 2.6k
4
votes
2
replies
4.7k
views
What Is (Or How To Find Out) The Meaning Of Error Code -1073741510 From Local Blast 2.2.25+?
biopython command-line error
updated 12.4 years ago by 6.0k • written 12.4 years ago by ★ 2.6k
17
votes
15
replies
10k
views
7 follow
Problem With Blastp Of Biopython: Returned Non-Zero Exit Status 1
biopython python error blast blast
updated 13.3 years ago by 6.0k • written 13.6 years ago by ★ 2.6k
8
votes
3
replies
4.4k
views
Biopython Ncbistandalone Blastall Gives Different Result Than Calling Blastall Directly From Cmd
python biopython blast
updated 13.3 years ago by 6.0k • written 13.6 years ago by ★ 2.6k
7
votes
3
replies
6.6k
views
How To Parse Psiblast Results Using Biopython And Blast-2.2.24+?
python biopython blast
updated 13.5 years ago by 161k • written 13.6 years ago by ★ 2.6k
7
votes
9
replies
5.9k
views
How To Show More Blast Results Using Biopython?
biopython blast python
updated 13.6 years ago by 6.0k • written 13.6 years ago by ★ 2.6k
31 results • Page 1 of 1
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