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questions
15
votes
6
replies
5.2k
views
6 follow
converting taxID to taxonomy
NCBI
TAXONOMY
TAXID
terminal
written 4.8 years ago by
Frieda
▴ 60
2
votes
1
reply
706
views
Why does deepvariant make a call if the allele does not exist in the sample?
genome
variant-calling
genetics
genotype
deepvariant
updated 13 months ago by
Ram
44k • written 21 months ago by
Frieda
▴ 60
0
votes
3
replies
773
views
Reomve the first occurance of overalapping variants from VCF file
vcf
vcftools
updated 22 months ago by
mohammadhassanj
▴ 260 • written 22 months ago by
Frieda
▴ 60
0
votes
2
replies
738
views
What does the position column in the VCF file from PostprocessGermlineCNVCalls refer to?
PostprocessGermlineCNVCalls
GATK
2.9 years ago by
Frieda
▴ 60
2
votes
0
replies
670
views
Is multi-threading possible for the GATK GermlineCNVCaller and PostprocessGermlineCNVCalls tools?
PostprocessGermlineCNVCalls
multi-threading
GermlineCNVCaller
GATK
2.9 years ago by
Frieda
▴ 60
1
vote
1
reply
725
views
How to load user-defined genome in IGV-webapp
IGV-WEBAPP
IGV
igv
updated 3.2 years ago by
GenoMax
148k • written 3.2 years ago by
Frieda
▴ 60
4
votes
3
replies
1.7k
views
picard MergeBamAlignment fails to merge ubam and bam
picard
MergeBamAlignment
GATK
3.5 years ago by
Frieda
▴ 60
2
votes
2
replies
1.5k
views
extract UTRs regions from gff file
gff
UTR
updated 3.6 years ago by
heskett
▴ 110 • written 3.6 years ago by
Frieda
▴ 60
3
votes
1
reply
1.3k
views
Finding the centromere and telomere of cattle genome (Bos Taurus)
NCBI
cattle
genome
chromosome
centromere
updated 4.4 years ago by
antonioggsousa
3.2k • written 4.4 years ago by
Frieda
▴ 60
9
votes
6
replies
1.0k
views
6 follow
Parsing a portion of a fasta file header
bash
fasta
parse
linux
terminal
updated 4.6 years ago by
Mensur Dlakic
★ 28k • written 4.6 years ago by
Frieda
▴ 60
4
votes
11
replies
1.6k
views
system() command in R does not return output in order
r
ncbi
command-line
4.7 years ago by
Frieda
▴ 60
7
votes
11
replies
2.0k
views
how to find the kingdom for a taxon id using the terminal?
ncbi
taxonomy
kingdom
terminal
updated 4.8 years ago by
GenoMax
148k • written 4.8 years ago by
Frieda
▴ 60
5
votes
3
replies
1.3k
views
Catching error "QueryKey value not found in link output" when fetching taxonomy from NCBI
NCBI
r
efetch
bash
error_handling
updated 4.8 years ago by
Asaf
10k • written 4.8 years ago by
Frieda
▴ 60
1
vote
3
replies
1.8k
views
Using Entrez to find the taxonomy for an accession number
accession_number
taxonomy
NCBI
entrez
updated 4.8 years ago by
vkkodali_ncbi
★ 3.8k • written 4.8 years ago by
Frieda
▴ 60
7
votes
5
replies
4.9k
views
How to get Taxonomy and Taxon ID for an Accession number using R/Python?
R
PYTHON
accession numer
taxonomy
updated 4.8 years ago by
Chirag Parsania
★ 2.0k • written 4.8 years ago by
Frieda
▴ 60
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