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4
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where to find GRCh38 for 1000 Genomes
VCF GRCh38 1000Genomes
updated 2.5 years ago by 11k • written 2.5 years ago by ▴ 100
9
votes
6
replies
3.1k
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where can i find the GRCh38 genetic map for IMPUTE2
map GRCh38 IMPUTE2
2.5 years ago by raalsuwaidi ▴ 100
2
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0
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3.1k
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Answer: Answer: where can i find the GRCh38 genetic map for IMPUTE2
2.5 years ago by raalsuwaidi ▴ 100
0
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0
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3.1k
views
Comment: Comment: where can i find the GRCh38 genetic map for IMPUTE2
2.5 years ago by raalsuwaidi ▴ 100
0
votes
1
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3.1k
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Comment: Comment: where can i find the GRCh38 genetic map for IMPUTE2
2.5 years ago by raalsuwaidi ▴ 100
0
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1
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1.1k
views
Comment: Comment: where to find GRCh38 for 1000 Genomes
2.5 years ago by raalsuwaidi ▴ 100
0
votes
0
replies
354
views
How does IMPUTE2 calculate concordance
concordance IMPUTE2
2.6 years ago by raalsuwaidi ▴ 100
0
votes
1
reply
823
views
Comment: Comment: How to perform imputation analysis between masked SNPs and ground truth
2.6 years ago by raalsuwaidi ▴ 100
2
votes
3
replies
823
views
How to perform imputation analysis between masked SNPs and ground truth
GWAS SNPs IMPUTE2
updated 2.6 years ago by 4.4k • written 2.6 years ago by ▴ 100
0
votes
0
replies
441
views
How to calculate r2 for IMPUTE2
r2 IMPUTE2
2.6 years ago by raalsuwaidi ▴ 100
0
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0
replies
1.3k
views
Comment: Comment: how to remove positions in VCF based on rsID
2.6 years ago by raalsuwaidi ▴ 100
6
votes
6
replies
1.3k
views
how to remove positions in VCF based on rsID
vcf plink bcftools
updated 15 months ago by 44k • written 2.6 years ago by ▴ 100
0
votes
1
reply
1.3k
views
Comment: Comment: how to remove positions in VCF based on rsID
2.6 years ago by raalsuwaidi ▴ 100
0
votes
0
replies
410
views
How does IMPUTE2 assigns snp_id
SNP VCF IMPUTE2 bcftools PLINK
2.6 years ago by raalsuwaidi ▴ 100
0
votes
0
replies
1.2k
views
Comment: Comment: help with CrossMap
2.6 years ago by raalsuwaidi ▴ 100
3
votes
1
reply
1.7k
views
how to convert from hap/legend to VCF
-merge_ref_panels_output_ref VCF IMPUTE2
updated 2.7 years ago by 11k • written 2.7 years ago by ▴ 100
0
votes
0
replies
1.4k
views
Comment: Comment: how to loop and select values from a python dataframe
2.7 years ago by raalsuwaidi ▴ 100
0
votes
1
reply
1.4k
views
Comment: Comment: how to loop and select values from a python dataframe
2.7 years ago by raalsuwaidi ▴ 100
1
vote
4
replies
1.4k
views
how to loop and select values from a python dataframe
dataframe python
2.7 years ago by raalsuwaidi ▴ 100
2
votes
1
reply
1000
views
understand and how to plot the PLINK mdist file
plink mdist plot
2.7 years ago by raalsuwaidi ▴ 100
2
votes
0
replies
1000
views
Answer: Answer: understand and how to plot the PLINK mdist file
2.7 years ago by raalsuwaidi ▴ 100
0
votes
2
replies
1.2k
views
help with CrossMap
VCF hg38 hg19 CrossMap
2.6 years ago by raalsuwaidi ▴ 100
7
votes
2
replies
3.3k
views
struggling in using bcftools to set variants to missing
missing2ref setGT bcftools vcf
updated 20 months ago by • 0 • written 2.9 years ago by ▴ 100
0
votes
0
replies
470
views
map files
genome impute2 map
2.9 years ago by raalsuwaidi ▴ 100
0
votes
0
replies
478
views
IMPUTE2 -merge_ref_panels output
IMPUTE2
2.9 years ago by raalsuwaidi ▴ 100
0
votes
0
replies
592
views
Distance matrix PCA
HAP PCA distance
3.0 years ago by raalsuwaidi ▴ 100
3
votes
0
replies
2.3k
views
Answer: Answer: IMPUTE2 -merge_ref_panels
3.0 years ago by raalsuwaidi ▴ 100
0
votes
1
reply
2.3k
views
Comment: Comment: IMPUTE2 -merge_ref_panels
3.0 years ago by raalsuwaidi ▴ 100
0
votes
1
reply
2.3k
views
Comment: Comment: IMPUTE2 -merge_ref_panels
3.0 years ago by raalsuwaidi ▴ 100
0
votes
1
reply
2.3k
views
Comment: Comment: IMPUTE2 -merge_ref_panels
3.0 years ago by raalsuwaidi ▴ 100
0
votes
1
reply
2.3k
views
Comment: Comment: IMPUTE2 -merge_ref_panels
3.0 years ago by raalsuwaidi ▴ 100
3
votes
9
replies
2.3k
views
IMPUTE2 -merge_ref_panels
IMPUTE2 -merge_ref_panels
updated 3.0 years ago by 88k • written 3.0 years ago by ▴ 100
0
votes
0
replies
1.8k
views
Comment: Comment: Mask a SNP before imputation
3.1 years ago by raalsuwaidi ▴ 100
0
votes
0
replies
812
views
Comment: Comment: custom reference panel
3.1 years ago by raalsuwaidi ▴ 100
1
vote
0
replies
663
views
Comment: Comment: What is the best way to generate snp list from reference genomes from NCBI?
3.1 years ago by raalsuwaidi ▴ 100
1
vote
2
replies
812
views
custom reference panel
sample impute GWAS
3.1 years ago by raalsuwaidi ▴ 100
0
votes
0
replies
2.2k
views
Comment: Comment: color coded PCA plot in R for a combined set
3.2 years ago by raalsuwaidi ▴ 100
0
votes
1
reply
2.2k
views
Comment: Comment: color coded PCA plot in R for a combined set
3.2 years ago by raalsuwaidi ▴ 100
3
votes
4
replies
2.2k
views
color coded PCA plot in R for a combined set
plink pca plot
3.2 years ago by raalsuwaidi ▴ 100
0
votes
0
replies
1.4k
views
Comment: Comment: PCA for combined set
3.2 years ago by raalsuwaidi ▴ 100
0
votes
1
reply
1.4k
views
Comment: Comment: PCA for combined set
3.2 years ago by raalsuwaidi ▴ 100
3
votes
4
replies
1.4k
views
PCA for combined set
plink bcftools vcf PCA
3.2 years ago by raalsuwaidi ▴ 100
0
votes
0
replies
720
views
Comment: Comment: Combining two vcf files
3.2 years ago by raalsuwaidi ▴ 100
1
vote
2
replies
720
views
Combining two vcf files
Vcf GWAS
3.2 years ago by raalsuwaidi ▴ 100
0
votes
0
replies
685
views
Combining data sets for PCA
Plink 1000genome PCA genotype
3.2 years ago by raalsuwaidi ▴ 100
0
votes
0
replies
1.6k
views
Comment: Comment: setting genotypes to missing
3.3 years ago by raalsuwaidi ▴ 100
4
votes
4
replies
1.6k
views
setting genotypes to missing
genotype vcf impute
3.3 years ago by raalsuwaidi ▴ 100
0
votes
0
replies
1.6k
views
Comment: Comment: setting genotypes to missing
3.3 years ago by raalsuwaidi ▴ 100
0
votes
0
replies
1.1k
views
Comment: Comment: missing REF and ALT in vcf
3.3 years ago by raalsuwaidi ▴ 100
1
vote
2
replies
1.1k
views
missing REF and ALT in vcf
REF SNP VCF ALT
3.3 years ago by raalsuwaidi ▴ 100
63 results • Page 1 of 2
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