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4
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3
replies
580
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where to find GRCh38 for 1000 Genomes
VCF GRCh38 1000Genomes
updated 14 months ago by 10k • written 14 months ago by ▴ 100
9
votes
6
replies
1.4k
views
where can i find the GRCh38 genetic map for IMPUTE2
map GRCh38 IMPUTE2
14 months ago by raalsuwaidi ▴ 100
2
votes
0
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1.4k
views
Answer: Answer: where can i find the GRCh38 genetic map for IMPUTE2
14 months ago by raalsuwaidi ▴ 100
0
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0
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1.4k
views
Comment: Comment: where can i find the GRCh38 genetic map for IMPUTE2
14 months ago by raalsuwaidi ▴ 100
0
votes
1
reply
1.4k
views
Comment: Comment: where can i find the GRCh38 genetic map for IMPUTE2
14 months ago by raalsuwaidi ▴ 100
0
votes
1
reply
580
views
Comment: Comment: where to find GRCh38 for 1000 Genomes
14 months ago by raalsuwaidi ▴ 100
0
votes
0
replies
194
views
How does IMPUTE2 calculate concordance
concordance IMPUTE2
15 months ago by raalsuwaidi ▴ 100
0
votes
1
reply
471
views
Comment: Comment: How to perform imputation analysis between masked SNPs and ground truth
15 months ago by raalsuwaidi ▴ 100
2
votes
3
replies
471
views
How to perform imputation analysis between masked SNPs and ground truth
GWAS SNPs IMPUTE2
updated 15 months ago by ★ 2.9k • written 15 months ago by ▴ 100
0
votes
0
replies
230
views
How to calculate r2 for IMPUTE2
r2 IMPUTE2
15 months ago by raalsuwaidi ▴ 100
0
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0
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761
views
Comment: Comment: how to remove positions in VCF based on rsID
15 months ago by raalsuwaidi ▴ 100
6
votes
6
replies
761
views
how to remove positions in VCF based on rsID
vcf plink bcftools
15 months ago by raalsuwaidi ▴ 100
0
votes
1
reply
761
views
Comment: Comment: how to remove positions in VCF based on rsID
15 months ago by raalsuwaidi ▴ 100
0
votes
0
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227
views
How does IMPUTE2 assigns snp_id
SNP VCF IMPUTE2 bcftools PLINK
15 months ago by raalsuwaidi ▴ 100
0
votes
0
replies
716
views
Comment: Comment: help with CrossMap
15 months ago by raalsuwaidi ▴ 100
2
votes
1
reply
870
views
how to convert from hap/legend to VCF
-merge_ref_panels_output_ref VCF IMPUTE2
updated 16 months ago by 10k • written 16 months ago by ▴ 100
0
votes
0
replies
751
views
Comment: Comment: how to loop and select values from a python dataframe
16 months ago by raalsuwaidi ▴ 100
0
votes
1
reply
751
views
Comment: Comment: how to loop and select values from a python dataframe
16 months ago by raalsuwaidi ▴ 100
1
vote
4
replies
751
views
how to loop and select values from a python dataframe
dataframe python
16 months ago by raalsuwaidi ▴ 100
2
votes
1
reply
529
views
understand and how to plot the PLINK mdist file
plink mdist plot
17 months ago by raalsuwaidi ▴ 100
2
votes
0
replies
529
views
Answer: Answer: understand and how to plot the PLINK mdist file
17 months ago by raalsuwaidi ▴ 100
0
votes
2
replies
716
views
help with CrossMap
VCF hg38 hg19 CrossMap
15 months ago by raalsuwaidi ▴ 100
6
votes
2
replies
1.7k
views
struggling in using bcftools to set variants to missing
missing2ref setGT bcftools vcf
updated 3 months ago by • 0 • written 18 months ago by ▴ 100
0
votes
0
replies
291
views
map files
genome impute2 map
19 months ago by raalsuwaidi ▴ 100
0
votes
0
replies
300
views
IMPUTE2 -merge_ref_panels output
IMPUTE2
19 months ago by raalsuwaidi ▴ 100
0
votes
0
replies
357
views
Distance matrix PCA
HAP PCA distance
19 months ago by raalsuwaidi ▴ 100
3
votes
0
replies
1.5k
views
Answer: Answer: IMPUTE2 -merge_ref_panels
20 months ago by raalsuwaidi ▴ 100
0
votes
1
reply
1.5k
views
Comment: Comment: IMPUTE2 -merge_ref_panels
20 months ago by raalsuwaidi ▴ 100
0
votes
1
reply
1.5k
views
Comment: Comment: IMPUTE2 -merge_ref_panels
20 months ago by raalsuwaidi ▴ 100
0
votes
1
reply
1.5k
views
Comment: Comment: IMPUTE2 -merge_ref_panels
20 months ago by raalsuwaidi ▴ 100
0
votes
1
reply
1.5k
views
Comment: Comment: IMPUTE2 -merge_ref_panels
20 months ago by raalsuwaidi ▴ 100
3
votes
9
replies
1.5k
views
IMPUTE2 -merge_ref_panels
IMPUTE2 -merge_ref_panels
updated 20 months ago by 85k • written 20 months ago by ▴ 100
0
votes
0
replies
1.2k
views
Comment: Comment: Mask a SNP before imputation
21 months ago by raalsuwaidi ▴ 100
0
votes
0
replies
531
views
Comment: Comment: custom reference panel
21 months ago by raalsuwaidi ▴ 100
1
vote
0
replies
443
views
Comment: Comment: What is the best way to generate snp list from reference genomes from NCBI?
21 months ago by raalsuwaidi ▴ 100
1
vote
2
replies
531
views
custom reference panel
sample impute GWAS
21 months ago by raalsuwaidi ▴ 100
0
votes
0
replies
1.5k
views
Comment: Comment: color coded PCA plot in R for a combined set
22 months ago by raalsuwaidi ▴ 100
0
votes
1
reply
1.5k
views
Comment: Comment: color coded PCA plot in R for a combined set
22 months ago by raalsuwaidi ▴ 100
3
votes
4
replies
1.5k
views
color coded PCA plot in R for a combined set
plink pca plot
22 months ago by raalsuwaidi ▴ 100
0
votes
0
replies
964
views
Comment: Comment: PCA for combined set
23 months ago by raalsuwaidi ▴ 100
0
votes
1
reply
964
views
Comment: Comment: PCA for combined set
23 months ago by raalsuwaidi ▴ 100
3
votes
4
replies
964
views
PCA for combined set
plink bcftools vcf PCA
23 months ago by raalsuwaidi ▴ 100
0
votes
0
replies
475
views
Comment: Comment: Combining two vcf files
23 months ago by raalsuwaidi ▴ 100
1
vote
2
replies
475
views
Combining two vcf files
Vcf GWAS
23 months ago by raalsuwaidi ▴ 100
0
votes
0
replies
485
views
Combining data sets for PCA
Plink 1000genome PCA genotype
23 months ago by raalsuwaidi ▴ 100
0
votes
0
replies
954
views
Comment: Comment: setting genotypes to missing
23 months ago by raalsuwaidi ▴ 100
4
votes
4
replies
954
views
setting genotypes to missing
genotype vcf impute
23 months ago by raalsuwaidi ▴ 100
0
votes
0
replies
954
views
Comment: Comment: setting genotypes to missing
23 months ago by raalsuwaidi ▴ 100
0
votes
0
replies
749
views
Comment: Comment: missing REF and ALT in vcf
23 months ago by raalsuwaidi ▴ 100
1
vote
2
replies
749
views
missing REF and ALT in vcf
REF SNP VCF ALT
23 months ago by raalsuwaidi ▴ 100
63 results • Page 1 of 2
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